Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

10629173 .. 10634877

Gene Structure 5705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G179400.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGACTGTTTTCAGACTGTTATTCATCATAAGGGTTATTTGTGCTGTCAGTTGTTGTTATTCTTTATCTGGTTATCCAGTTTTCAAGATGTCGTGGCAGTGCAGACAGTATTTAACCGAAGTCATGTTTCTTCAATGGCAGAGCTAGGCCTGGCTAATCCACCTACTACTGGGTTCTTTGATCCCATAGAAATATCACCAGCTGTTATTCCACATTACCCAAATCCTGCAGATGATCCTTTGGCACCAATGTACCCAACTTTTCCGACGAGATATGAGCCTGTTTTAACTGGGAAATGTCCTGTAAATTTCTCTACTATATCAAGTGTAATGGAAAAAACCGCATCTGATTGTTCTCAACCCCTAGCAGCACTTGTAGGAAATGTAATATGTTGCCCACAGTTTAGTAGTTTGATCCGTATCTTCCGGGGTCTCGATAGCTTCAAGCCTGATAAGTTGGTTTTGCAAAATTCAGTCGCAAATGACTGTTTTACAGATATCATCAGTATCTTAGTCAGCAGGGGTGCAAACAGTACAATAGCTACACTTTGCTCCATAAATTCATCAAATCTTACGGGTGGGTCCTGTCCAGTGAAGGACATTAGTACCTTTGATAAAACAGTAAATACAAGTGGATTACTGGAGGCCTGCACAACTGTTGATCCTCTTAAAGAGTGCTGCAGACCAATCTGCCAGCTTGCGATCATGGATGCTGCACGTCAAATCTCAGGAAAACAATTGATGATGAATGAGAACAAAAATTTAGTGGGTGGGCTTAACTACACTGATACTCTAAGCGATTGTAAAGGAGTGGTTTTTACATATCTTTCGAGGAAACTCTTGTCAGATGCTGCAAATACTGCATTTCGAATATTATCTGCCTGCAAAGTTAACAAAGTTTGTCCTTTGGATTTTAAGCAGCCTTCAGAAGTAGTTAAAGCATGTCGCAATGTTGCTGCCCCTAGTCCTTCCTGCTGTAGCTCATTAAACACTTACATCTCTGGAATACAAAAGCAAATGTTGATTACAAATAAACAAGCTATAATCTGTGCTACAGTGTTTGGGTCCATGTTGAGGAAAGGCGGGGTAATGGAAAATGTTTATGAGCTTTGTGATGTTGACTTGAAAGACTTCAGCATTCAAGCAGCATATGGTCAACAAGGGTGTCTACTTAAAAGCTTGCCTTCAGATGTGATTTTTGACAATATAACAGGCATCAGCTTTATATGTGATTTGAGTGACAACATTGCAGCACCGTGGCCTTCGTCTTCCTCAATTTCATCGGTGTCCCTTTGTGCGCCTGAGATGTCATTGCCTGCACTACCAACGGCGGAGACTTTTAAAAATCTTGGCTGTCGTGGTGGTGAGCTAGAATTTATGTTACCCGTTTTTTCATTGTTTGTTTTGTGCACTTTGTTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

51.28

Weight (kDa)

5.5

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	244
AccI	GTMKAC	1 cut(s)	1168
AciI	CCGC	3 cut(s)	342, 1083, 1331
AclWI	GGATC	4 cut(s)	176, 230, 409, 656
AcsI	RAATTY	5 cut(s)	307, 469, 559, 760, 1373
AcuI	CTGAAG	3 cut(s)	909, 1117, 1170
AfaI	GTAC	4 cut(s)	254, 535, 607, 1421
AfiI	CCNNNNNNNGG	2 cut(s)	170, 1074
AgsI	TTSAA	5 cut(s)	86, 135, 445, 1126, 1142
AjiI	CACGTC	1 cut(s)	719
AjnI	CCWGG	1 cut(s)	150
Alw21I	GWGCWC	1 cut(s)	1412
Alw26I	GTCTC	2 cut(s)	437, 1328
Alw44I	GTGCAC	1 cut(s)	1408
AlwI	GGATC	4 cut(s)	176, 230, 409, 656
AlwNI	CAGNNNCTG	1 cut(s)	851
AoxI	GGCC	3 cut(s)	148, 645, 1259
ApaLI	GTGCAC	1 cut(s)	1408
ApeKI	GCWGC	8 cut(s)	368, 678, 713, 851, 919, 956, 1145, 1250
ApoI	RAATTY	5 cut(s)	307, 469, 559, 760, 1373
Asp700I	GAANNNNTTC	1 cut(s)	1130
AspLEI	GCGC	1 cut(s)	1300
AspS9I	GGNCC	2 cut(s)	582, 1065
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	189, 1376
AsuII	TTCGAA	1 cut(s)	868
AvaII	GGWCC	2 cut(s)	582, 1065
BaeGI	GKGCMC	1 cut(s)	1412
BaeI	ACNNNNGTAYC	4 cut(s)	236, 269, 589, 622
BanI	GGYRCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	1260
Bbv12I	GWGCWC	1 cut(s)	1412
BbvI	GCAGC	8 cut(s)	380, 665, 700, 838, 931, 943, 1157, 1262
BceAI	ACGGC	1 cut(s)	1344
BciT130I	CCWGG	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	2 cut(s)	437, 1328
BfaI	CTAG	4 cut(s)	146, 365, 963, 1370
BfmI	CTRYAG	4 cut(s)	228, 679, 976, 1053
BisI	GCNGC	8 cut(s)	369, 679, 714, 852, 920, 957, 1146, 1251
BlsI	GCNGC	8 cut(s)	370, 680, 715, 853, 921, 958, 1147, 1252
Bme1390I	CCNGG	2 cut(s)	152, 428
Bme18I	GGWCC	2 cut(s)	582, 1065
BmgBI	CACGTC	1 cut(s)	719
BmgT120I	GGNCC	2 cut(s)	582, 1065
BmiI	GGNNCC	3 cut(s)	246, 583, 1066
BmrFI	CCNGG	2 cut(s)	152, 428
BmrI	ACTGGG	2 cut(s)	180, 300
BmsI	GCATC	4 cut(s)	353, 700, 838, 1224
BmuI	ACTGGG	2 cut(s)	180, 300
BpiI	GAAGAC	1 cut(s)	1260
BpmI	CTGGAG	1 cut(s)	662
Bpu14I	TTCGAA	1 cut(s)	868
BpuMI	CCSGG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	2 cut(s)	427, 1256
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 1074
Bse1I	ACTGG	5 cut(s)	78, 175, 295, 590, 645
Bse3DI	GCAATG	3 cut(s)	955, 1245, 1310
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	427, 1256
BseGI	GGATG	1 cut(s)	715
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	170, 1074
BseMI	GCAATG	3 cut(s)	955, 1245, 1310
BseMII	CTCAG	2 cut(s)	741, 1293
BseNI	ACTGG	5 cut(s)	78, 175, 295, 590, 645
BseSI	GKGCMC	1 cut(s)	1412
BseXI	GCAGC	8 cut(s)	380, 665, 700, 838, 931, 943, 1157, 1262
BsgI	GTGCAG	4 cut(s)	122, 634, 699, 1302
BshFI	GGCC	3 cut(s)	150, 647, 1261
BshNI	GGYRCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	1412
BsiSI	CCGG	1 cut(s)	427
BslFI	GGGAC	1 cut(s)	1273
BslI	CCNNNNNNNGG	2 cut(s)	170, 1074
BsmAI	GTCTC	2 cut(s)	437, 1328
BsmFI	GGGAC	1 cut(s)	1273
BsmI	GAATGC	1 cut(s)	1137
BsnI	GGCC	3 cut(s)	150, 647, 1261
Bso31I	GGTCTC	1 cut(s)	437
Bsp119I	TTCGAA	1 cut(s)	868
Bsp1286I	GDGCHC	1 cut(s)	1412
Bsp143I	GATC	5 cut(s)	181, 235, 414, 661, 702
BspACI	CCGC	3 cut(s)	342, 1083, 1331
BspANI	GGCC	3 cut(s)	150, 647, 1261
BspCNI	CTCAG	2 cut(s)	740, 1294
BspLI	GGNNCC	3 cut(s)	246, 583, 1066
BspMAI	CTGCAG	2 cut(s)	232, 683
BspPI	GGATC	4 cut(s)	176, 230, 409, 656
BspT104I	TTCGAA	1 cut(s)	868
BspT107I	GGYRCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	3 cut(s)	955, 1245, 1310
BsrI	ACTGG	5 cut(s)	78, 175, 295, 590, 645
BssECI	CCNNGG	2 cut(s)	427, 1256
BssMI	GATC	5 cut(s)	181, 235, 414, 661, 702
Bst2UI	CCWGG	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	868
BstC8I	GCNNGC	6 cut(s)	649, 695, 699, 883, 1181, 1317
BstDEI	CTNAG	4 cut(s)	511, 727, 794, 1302
BstDSI	CCRYGG	1 cut(s)	1256
BstF5I	GGATG	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	1300
BstKTI	GATC	5 cut(s)	184, 238, 417, 664, 705
BstMAI	GTCTC	2 cut(s)	437, 1328
BstMBI	GATC	5 cut(s)	181, 235, 414, 661, 702
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNI	CCWGG	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	945
BstSCI	CCNGG	2 cut(s)	150, 426
BstSFI	CTRYAG	4 cut(s)	228, 679, 976, 1053
BstSLI	GKGCMC	1 cut(s)	1412
BstV1I	GCAGC	8 cut(s)	380, 665, 700, 838, 931, 943, 1157, 1262
BstV2I	GAAGAC	1 cut(s)	1260
BsuRI	GGCC	3 cut(s)	150, 647, 1261
BtgI	CCRYGG	1 cut(s)	1256
BtrI	CACGTC	1 cut(s)	719
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	4 cut(s)	105, 597, 783, 1062
Cac8I	GCNNGC	6 cut(s)	649, 695, 699, 883, 1181, 1317
CaiI	CAGNNNCTG	1 cut(s)	851
CfoI	GCGC	1 cut(s)	1300
Cfr13I	GGNCC	2 cut(s)	582, 1065
Csp6I	GTAC	4 cut(s)	253, 534, 606, 1420
CviAII	CATG	4 cut(s)	125, 706, 942, 1069
CviQI	GTAC	4 cut(s)	253, 534, 606, 1420
DdeI	CTNAG	4 cut(s)	511, 727, 794, 1302
DpnI	GATC	5 cut(s)	183, 237, 416, 663, 704
DpnII	GATC	5 cut(s)	181, 235, 414, 661, 702
DraI	TTTAAA	1 cut(s)	1342
EciI	GGCGGA	1 cut(s)	1346
Eco147I	AGGCCT	2 cut(s)	150, 647
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	582, 1065
Eco57I	CTGAAG	3 cut(s)	909, 1117, 1170
EcoO109I	RGGNCCY	1 cut(s)	582
EcoRII	CCWGG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	4 cut(s)	128, 709, 945, 1072
FalI	AAGNNNNNCTT	2 cut(s)	1168, 1200
FaqI	GGGAC	1 cut(s)	1273
FatI	CATG	4 cut(s)	124, 705, 941, 1068
FauI	CCCGC	1 cut(s)	1076
FauNDI	CATATG	1 cut(s)	1150
FblI	GTMKAC	1 cut(s)	1168
Fnu4HI	GCNGC	8 cut(s)	369, 679, 714, 852, 920, 957, 1146, 1251
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	8 cut(s)	369, 679, 714, 852, 920, 957, 1146, 1251
FspBI	CTAG	4 cut(s)	146, 365, 963, 1370
GlaI	GCGC	1 cut(s)	1299
GluI	GCNGC	8 cut(s)	369, 679, 714, 852, 920, 957, 1146, 1251
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	3 cut(s)	150, 647, 1261
HapII	CCGG	1 cut(s)	427
HhaI	GCGC	1 cut(s)	1300
Hin1II	CATG	4 cut(s)	128, 709, 945, 1072
Hin6I	GCGC	1 cut(s)	1298
HinP1I	GCGC	1 cut(s)	1298
HincII	GTYRAC	3 cut(s)	892, 1120, 1157
HindII	GTYRAC	3 cut(s)	892, 1120, 1157
HindIII	AAGCTT	1 cut(s)	1177
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	189, 1376
Hpy166II	GTNNAC	5 cut(s)	892, 1120, 1157, 1169, 1410
Hpy188I	TCNGA	6 cut(s)	15, 267, 349, 847, 928, 1189
Hpy188III	TCNNGA	4 cut(s)	86, 434, 729, 1002
Hpy8I	GTNNAC	5 cut(s)	892, 1120, 1157, 1169, 1410
Hpy99I	CGWCG	1 cut(s)	271
HpyAV	CCTTC	5 cut(s)	589, 933, 978, 1194, 1272
HpyCH4IV	ACGT	1 cut(s)	718
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	4 cut(s)	511, 727, 794, 1302
HpySE526I	ACGT	1 cut(s)	718
Hsp92II	CATG	4 cut(s)	128, 709, 945, 1072
HspAI	GCGC	1 cut(s)	1298
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	181, 235, 414, 661, 702
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	8 cut(s)	380, 665, 700, 838, 931, 943, 1157, 1262
LweI	GCATC	4 cut(s)	353, 700, 838, 1224
MaeI	CTAG	4 cut(s)	146, 365, 963, 1370
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	2 cut(s)	1238, 1380
MalI	GATC	5 cut(s)	183, 237, 416, 663, 704
MboI	GATC	5 cut(s)	181, 235, 414, 661, 702
MboII	GAAGA	3 cut(s)	123, 415, 1260
MfeI	CAATTG	1 cut(s)	737
MhlI	GDGCHC	1 cut(s)	1412
MluCI	AATT	7 cut(s)	307, 469, 559, 737, 760, 1275, 1373
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	5 cut(s)	637, 675, 825, 1068, 1282
MroXI	GAANNNNTTC	1 cut(s)	1130
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	2 cut(s)	152, 428
MunI	CAATTG	1 cut(s)	737
Mva1269I	GAATGC	1 cut(s)	1137
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	860
NciI	CCSGG	1 cut(s)	428
NdeI	CATATG	1 cut(s)	1150
NdeII	GATC	5 cut(s)	181, 235, 414, 661, 702
NlaIII	CATG	4 cut(s)	128, 709, 945, 1072
NlaIV	GGNNCC	3 cut(s)	246, 583, 1066
NmuCI	GTSAC	1 cut(s)	1238
NspI	RCATGY	1 cut(s)	945
NspV	TTCGAA	1 cut(s)	868
PceI	AGGCCT	2 cut(s)	150, 647
PctI	GAATGC	1 cut(s)	1137
PdmI	GAANNNNTTC	1 cut(s)	1130
PkrI	GCNGC	8 cut(s)	370, 680, 715, 853, 921, 958, 1147, 1252
PpuMI	RGGWCCY	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	246, 583, 1066
PspPI	GGNCC	2 cut(s)	582, 1065
PspPPI	RGGWCCY	1 cut(s)	582
PstI	CTGCAG	2 cut(s)	232, 683
PstNI	CAGNNNCTG	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	4 cut(s)	254, 535, 607, 1421
RsaNI	GTAC	4 cut(s)	253, 534, 606, 1420
SatI	GCNGC	8 cut(s)	369, 679, 714, 852, 920, 957, 1146, 1251
Sau3AI	GATC	5 cut(s)	181, 235, 414, 661, 702
Sau96I	GGNCC	2 cut(s)	582, 1065
ScrFI	CCNGG	2 cut(s)	152, 428
SduI	GDGCHC	1 cut(s)	1412
SfaNI	GCATC	4 cut(s)	353, 700, 838, 1224
SfcI	CTRYAG	4 cut(s)	228, 679, 976, 1053
SfuI	TTCGAA	1 cut(s)	868
SinI	GGWCC	2 cut(s)	582, 1065
Sse9I	AATT	7 cut(s)	307, 469, 559, 737, 760, 1275, 1373
SseBI	AGGCCT	2 cut(s)	150, 647
SsiI	CCGC	3 cut(s)	342, 1083, 1331
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	4 cut(s)	146, 365, 963, 1370
StuI	AGGCCT	2 cut(s)	150, 647
StyD4I	CCNGG	2 cut(s)	150, 426
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	3 cut(s)	435, 830, 868
TasI	AATT	7 cut(s)	307, 469, 559, 737, 760, 1275, 1373
TatI	WGTACW	2 cut(s)	533, 1419
TscAI	CASTG	4 cut(s)	105, 597, 790, 1062
TseFI	GTSAC	1 cut(s)	1238
TseI	GCWGC	8 cut(s)	368, 678, 713, 851, 919, 956, 1145, 1250
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	5 cut(s)	14, 552, 761, 1269, 1383
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	4 cut(s)	105, 597, 790, 1062
VneI	GTGCAC	1 cut(s)	1408
VpaK11BI	GGWCC	2 cut(s)	582, 1065
XapI	RAATTY	5 cut(s)	307, 469, 559, 760, 1373
XceI	RCATGY	1 cut(s)	945
XmiI	GTMKAC	1 cut(s)	1168
XmnI	GAANNNNTTC	1 cut(s)	1130
XspI	CTAG	4 cut(s)	146, 365, 963, 1370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.