Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

14395944 .. 14400565

Gene Structure 4622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGACTGTTGTCACACTCTTAGTCATCTTAAAGGTTCTTTGTGCTGTCAGCTATTATTATTCTTTATCTGGTTATCCAGTTTTCAAGATGCTGTGGCATCAGAGACCGTCTTTGAGCAAAGTCATGTTCCTATAATGCCAGAGCTTGCTAAACCACCTTCTACTGGAATTTTTGGTCCTATAGAAATATCACCTGCAGTTATTCCACATTATCCAGATCCTGACGAACCCTTTCCGCCAATGTACCCGACATTTCCGACCCGATATGAGCCTGTTTTAACTGGGCAATGTCCTGTCAATTTCTCCGCTATGTCGAGTATCATCGAAAAAACAGCTTCTGATTGTTCTCAACCTTTGGCAGCACTTGTAGGGAATGTAATTTGTTGTCCACAGTTCAATAGTTTGATGCGCATCTTCCAGGGTCTCTACAGCTTGAATAACTCGGCTAAGTTGGTTTTGCAAAATTCTGTTGCAAGTGATTGTTTTACAGATATAATCAGTATCTTAGCCAGTAGGGGTGCAAATAGTACCATAGCTACACTTTGCTCTGTAAAATCTTCAAATCTTACTGGTGGGTCCTGTCCAGTGAGGGATGTTGACACCTTTGAAAAAACAGTAAACACAAGCAGATTACTAGAGGCTTGCACAGCTGTTGATCCTCTTAAAGAGTGCTGCCGACCAATTTGTCAACCTGCAATCATGGATGCGGCGCTTCAGATCTCCGGGAAGCAATTGGTGTTGGATGATAATGAAAATTTGGTTGGTGAGCTGAATCATATCGACACTCCAAGTGACTGTAAAGGAGTGGTTTTTGCATATCTTTCAAGGAAACTCCCATCAGATGTTGTAAATACTGCATTTCGAATATTATCTGCCTGCAAAGTCAATAAAGTTTGTCCTTTAGATTTTAAGCAGCCTTTGGAAGTAATTAAAGCATGCCGCAATGTTGCTGCCCCAAGTCCTTCCTGCTGTAGCTCATTAAACACCTACATTGCAGGAATACAGAAGCAAATGTTGATTACAAACAGACAAGCTATAATTTGTGCCACAATGTTTGGTTCTTTATTGAGGAAAGGCGGGGTAATGACAAATATTTATGAGCTTTGTGATGTTGATTTAAAAGACTTCAGCATTCAAGCATATGGTCAACAAGGATGCCTACTTAGAAGCCTGCCTGCAGATGTGATGTTTGACAATTCAACTGGCTTCAGCTTTACATGTGATTTAAGTGATAATATTGCAGCACCATGGCCTTCGTCGTCCTCAATGTCATCAGTGTCCCTCTGTGGCCCCGAGATGTCATTGCCCGCTCTACCAACATCGGAGACTTTTAAAAATCCTGGCTGTCGTGGTGGAGGGCAGCAATTGCTTGTAACCATTATTTCATTTTTGGTCTTGGGGTCTTTATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

50.76

Weight (kDa)

5.13

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	94 - 248	2.7e-22	SPARK
At1g61900	PF26584	297 - 370	1.5e-31	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
AasI	GACNNNNNNGTC	1 cut(s)	684
Acc16I	TGCGCA	1 cut(s)	410
Acc36I	ACCTGC	2 cut(s)	202, 700
AccBSI	CCGCTC	1 cut(s)	1310
AciI	CCGC	6 cut(s)	236, 306, 707, 940, 1077, 1308
AclWI	GGATC	2 cut(s)	212, 650
AcsI	RAATTY	3 cut(s)	168, 463, 754
AcuI	CTGAAG	3 cut(s)	698, 1111, 1192
AfaI	GTAC	3 cut(s)	245, 529, 1412
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	1217
AgsI	TTSAA	8 cut(s)	86, 397, 436, 561, 608, 825, 1136, 1200
AjnI	CCWGG	2 cut(s)	417, 1339
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
Alw26I	GTCTC	3 cut(s)	98, 428, 1319
AlwI	GGATC	2 cut(s)	212, 650
AlwNI	CAGNNNCTG	2 cut(s)	221, 338
Ama87I	CYCGRG	1 cut(s)	1292
AoxI	GGCC	2 cut(s)	1250, 1288
ApeKI	GCWGC	6 cut(s)	359, 672, 913, 950, 1241, 1360
ApoI	RAATTY	3 cut(s)	168, 463, 754
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	411, 712
AspS9I	GGNCC	3 cut(s)	176, 576, 1289
AsuC2I	CCSGG	1 cut(s)	724
AsuHPI	GGTGA	2 cut(s)	183, 776
AsuII	TTCGAA	1 cut(s)	862
AvaI	CYCGRG	1 cut(s)	1292
AvaII	GGWCC	2 cut(s)	176, 576
BbvI	GCAGC	6 cut(s)	371, 659, 925, 937, 1253, 1372
BccI	CCATC	1 cut(s)	844
BciT130I	CCWGG	2 cut(s)	419, 1341
BcnI	CCSGG	1 cut(s)	724
BcoDI	GTCTC	3 cut(s)	98, 428, 1319
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	5 cut(s)	180, 195, 427, 970, 1176
BfoI	RGCGCY	1 cut(s)	713
BfuAI	ACCTGC	2 cut(s)	202, 700
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	8 cut(s)	360, 673, 708, 914, 940, 951, 1242, 1361
BlsI	GCNGC	8 cut(s)	361, 674, 709, 915, 941, 952, 1243, 1362
Bme1390I	CCNGG	3 cut(s)	419, 724, 1341
Bme18I	GGWCC	2 cut(s)	176, 576
BmeT110I	CYCGRG	1 cut(s)	1292
BmgT120I	GGNCC	3 cut(s)	176, 576, 1289
BmiI	GGNNCC	2 cut(s)	577, 1291
BmrFI	CCNGG	3 cut(s)	419, 724, 1341
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	6 cut(s)	79, 107, 396, 420, 694, 1145
BmuI	ACTGGG	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	9
Bpu14I	TTCGAA	1 cut(s)	862
BpuMI	CCSGG	1 cut(s)	724
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	2 cut(s)	98, 428
BsaJI	CCNNGG	2 cut(s)	418, 1247
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	7 cut(s)	78, 169, 286, 510, 574, 584, 1207
Bse3DI	GCAATG	4 cut(s)	293, 949, 990, 1301
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	419, 1341
BseDI	CCNNGG	2 cut(s)	418, 1247
BseGI	GGATG	4 cut(s)	598, 709, 748, 1160
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	4 cut(s)	293, 949, 990, 1301
BseNI	ACTGG	7 cut(s)	78, 169, 286, 510, 574, 584, 1207
BseXI	GCAGC	6 cut(s)	371, 659, 925, 937, 1253, 1372
BshFI	GGCC	2 cut(s)	1252, 1290
BsiHKCI	CYCGRG	1 cut(s)	1292
BsiSI	CCGG	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	1264
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	3 cut(s)	98, 428, 1319
BsmFI	GGGAC	1 cut(s)	1264
BsmI	GAATGC	1 cut(s)	1131
BsnI	GGCC	2 cut(s)	1252, 1290
Bso31I	GGTCTC	2 cut(s)	98, 428
BsoBI	CYCGRG	1 cut(s)	1292
Bsp119I	TTCGAA	1 cut(s)	862
Bsp143I	GATC	3 cut(s)	217, 655, 717
Bsp19I	CCATGG	1 cut(s)	1247
BspACI	CCGC	6 cut(s)	236, 306, 707, 940, 1077, 1308
BspANI	GGCC	2 cut(s)	1252, 1290
BspLI	GGNNCC	2 cut(s)	577, 1291
BspMAI	CTGCAG	2 cut(s)	199, 1180
BspMI	ACCTGC	2 cut(s)	202, 700
BspPI	GGATC	2 cut(s)	212, 650
BspT104I	TTCGAA	1 cut(s)	862
BspTNI	GGTCTC	2 cut(s)	98, 428
BsrBI	CCGCTC	1 cut(s)	1310
BsrDI	GCAATG	4 cut(s)	293, 949, 990, 1301
BsrI	ACTGG	7 cut(s)	78, 169, 286, 510, 574, 584, 1207
BssECI	CCNNGG	2 cut(s)	418, 1247
BssMI	GATC	3 cut(s)	217, 655, 717
BssT1I	CCWWGG	1 cut(s)	1247
Bst2UI	CCWGG	2 cut(s)	419, 1341
Bst4CI	ACNGT	5 cut(s)	8, 109, 393, 616, 797
BstAPI	GCANNNNNTGC	1 cut(s)	1366
BstBI	TTCGAA	1 cut(s)	862
BstC8I	GCNNGC	7 cut(s)	147, 643, 877, 937, 1172, 1176, 1308
BstDEI	CTNAG	4 cut(s)	20, 447, 505, 1163
BstDSI	CCRYGG	1 cut(s)	1247
BstF5I	GGATG	4 cut(s)	598, 709, 748, 1160
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	2 cut(s)	411, 712
BstKTI	GATC	3 cut(s)	220, 658, 720
BstMAI	GTCTC	3 cut(s)	98, 428, 1319
BstMBI	GATC	3 cut(s)	217, 655, 717
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 1366
BstNI	CCWGG	2 cut(s)	419, 1341
BstNSI	RCATGY	2 cut(s)	939, 1221
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	417, 722, 1339
BstSFI	CTRYAG	5 cut(s)	180, 195, 427, 970, 1176
BstV1I	GCAGC	6 cut(s)	371, 659, 925, 937, 1253, 1372
BstX2I	RGATCY	2 cut(s)	217, 717
BstYI	RGATCY	2 cut(s)	217, 717
BsuRI	GGCC	2 cut(s)	1252, 1290
BtgI	CCRYGG	1 cut(s)	1247
BtsCI	GGATG	4 cut(s)	598, 709, 748, 1160
BtsIMutI	CAGTG	2 cut(s)	591, 1281
BveI	ACCTGC	2 cut(s)	202, 700
Cac8I	GCNNGC	7 cut(s)	147, 643, 877, 937, 1172, 1176, 1308
CaiI	CAGNNNCTG	2 cut(s)	221, 338
CfoI	GCGC	2 cut(s)	411, 712
Cfr13I	GGNCC	3 cut(s)	176, 576, 1289
Csp6I	GTAC	3 cut(s)	244, 528, 1411
CspCI	CAANNNNNGTGG	2 cut(s)	1036, 1071
CviAII	CATG	5 cut(s)	125, 700, 936, 1218, 1248
CviQI	GTAC	3 cut(s)	244, 528, 1411
DdeI	CTNAG	4 cut(s)	20, 447, 505, 1163
DpnI	GATC	3 cut(s)	219, 657, 719
DpnII	GATC	3 cut(s)	217, 655, 717
DraI	TTTAAA	2 cut(s)	1119, 1333
DrdI	GACNNNNNNGTC	1 cut(s)	684
DseDI	GACNNNNNNGTC	1 cut(s)	684
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	1247
Eco31I	GGTCTC	2 cut(s)	98, 428
Eco47I	GGWCC	2 cut(s)	176, 576
Eco57I	CTGAAG	3 cut(s)	698, 1111, 1192
Eco88I	CYCGRG	1 cut(s)	1292
EcoO109I	RGGNCCY	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	417, 1339
EcoT14I	CCWWGG	1 cut(s)	1247
ErhI	CCWWGG	1 cut(s)	1247
FaeI	CATG	5 cut(s)	128, 703, 939, 1221, 1251
FaqI	GGGAC	1 cut(s)	1264
FatI	CATG	5 cut(s)	124, 699, 935, 1217, 1247
FauI	CCCGC	2 cut(s)	1070, 1315
FauNDI	CATATG	1 cut(s)	1141
Fnu4HI	GCNGC	8 cut(s)	360, 673, 708, 914, 940, 951, 1242, 1361
FokI	GGATG	4 cut(s)	605, 716, 755, 1167
Fsp4HI	GCNGC	8 cut(s)	360, 673, 708, 914, 940, 951, 1242, 1361
FspAI	RTGCGCAY	1 cut(s)	410
FspBI	CTAG	1 cut(s)	635
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	2 cut(s)	410, 711
GluI	GCNGC	8 cut(s)	360, 673, 708, 914, 940, 951, 1242, 1361
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	2 cut(s)	1252, 1290
HapII	CCGG	1 cut(s)	723
HhaI	GCGC	2 cut(s)	411, 712
Hin1II	CATG	5 cut(s)	128, 703, 939, 1221, 1251
Hin6I	GCGC	2 cut(s)	409, 710
HinP1I	GCGC	2 cut(s)	409, 710
HincII	GTYRAC	3 cut(s)	598, 689, 1148
HindII	GTYRAC	3 cut(s)	598, 689, 1148
HinfI	GANTC	1 cut(s)	772
HpaII	CCGG	1 cut(s)	723
HphI	GGTGA	2 cut(s)	183, 776
Hpy166II	GTNNAC	5 cut(s)	389, 598, 619, 689, 1148
Hpy188I	TCNGA	6 cut(s)	103, 258, 340, 717, 841, 1324
Hpy188III	TCNNGA	3 cut(s)	86, 215, 221
Hpy8I	GTNNAC	5 cut(s)	389, 598, 619, 689, 1148
Hpy99I	CGWCG	1 cut(s)	1261
HpyAV	CCTTC	3 cut(s)	168, 972, 1263
HpyCH4III	ACNGT	5 cut(s)	8, 109, 393, 616, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 1366
HpyF3I	CTNAG	4 cut(s)	20, 447, 505, 1163
Hsp92II	CATG	5 cut(s)	128, 703, 939, 1221, 1251
HspAI	GCGC	2 cut(s)	409, 710
Kzo9I	GATC	3 cut(s)	217, 655, 717
Lsp1109I	GCAGC	6 cut(s)	371, 659, 925, 937, 1253, 1372
LweI	GCATC	6 cut(s)	79, 107, 396, 420, 694, 1145
MaeI	CTAG	1 cut(s)	635
MaeIII	GTNAC	3 cut(s)	11, 791, 1372
MalI	GATC	3 cut(s)	219, 657, 719
MbiI	CCGCTC	1 cut(s)	1310
MboI	GATC	3 cut(s)	217, 655, 717
MboII	GAAGA	2 cut(s)	406, 549
MfeI	CAATTG	2 cut(s)	731, 1364
MflI	RGATCY	2 cut(s)	217, 717
MmeI	TCCRAC	2 cut(s)	281, 720
MnlI	CCTC	7 cut(s)	582, 631, 669, 1062, 1273, 1292, 1349
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	9 cut(s)	30, 278, 663, 909, 930, 980, 1118, 1226, 1332
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	1 cut(s)	723
MspR9I	CCNGG	3 cut(s)	419, 724, 1341
MunI	CAATTG	2 cut(s)	731, 1364
Mva1269I	GAATGC	1 cut(s)	1131
MvaI	CCWGG	2 cut(s)	419, 1341
MwoI	GCNNNNNNNGC	2 cut(s)	647, 1366
NciI	CCSGG	1 cut(s)	724
NcoI	CCATGG	1 cut(s)	1247
NdeI	CATATG	1 cut(s)	1141
NdeII	GATC	3 cut(s)	217, 655, 717
NlaIII	CATG	5 cut(s)	128, 703, 939, 1221, 1251
NlaIV	GGNNCC	2 cut(s)	577, 1291
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	2 cut(s)	11, 791
NsbI	TGCGCA	1 cut(s)	410
NspI	RCATGY	2 cut(s)	939, 1221
NspV	TTCGAA	1 cut(s)	862
PaeI	GCATGC	1 cut(s)	939
PaqCI	CACCTGC	1 cut(s)	202
PciI	ACATGT	1 cut(s)	1217
PctI	GAATGC	1 cut(s)	1131
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	772
PfoI	TCCNGGA	1 cut(s)	722
PkrI	GCNGC	8 cut(s)	361, 674, 709, 915, 941, 952, 1243, 1362
PpuMI	RGGWCCY	1 cut(s)	576
PscI	ACATGT	1 cut(s)	1217
PshAI	GACNNNNGTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	417, 1339
PspGI	CCWGG	2 cut(s)	417, 1339
PspN4I	GGNNCC	2 cut(s)	577, 1291
PspPI	GGNCC	3 cut(s)	176, 576, 1289
PspPPI	RGGWCCY	1 cut(s)	576
PstI	CTGCAG	2 cut(s)	199, 1180
PstNI	CAGNNNCTG	2 cut(s)	221, 338
PsuI	RGATCY	2 cut(s)	217, 717
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	3 cut(s)	245, 529, 1412
RsaNI	GTAC	3 cut(s)	244, 528, 1411
SaqAI	TTAA	9 cut(s)	30, 278, 663, 909, 930, 980, 1118, 1226, 1332
SatI	GCNGC	8 cut(s)	360, 673, 708, 914, 940, 951, 1242, 1361
Sau3AI	GATC	3 cut(s)	217, 655, 717
Sau96I	GGNCC	3 cut(s)	176, 576, 1289
ScrFI	CCNGG	3 cut(s)	419, 724, 1341
SfaNI	GCATC	6 cut(s)	79, 107, 396, 420, 694, 1145
SfcI	CTRYAG	5 cut(s)	180, 195, 427, 970, 1176
SfuI	TTCGAA	1 cut(s)	862
SinI	GGWCC	2 cut(s)	176, 576
SphI	GCATGC	1 cut(s)	939
SsiI	CCGC	6 cut(s)	236, 306, 707, 940, 1077, 1308
SspI	AATATT	3 cut(s)	867, 1093, 1237
SspMI	CTAG	1 cut(s)	635
StyD4I	CCNGG	3 cut(s)	417, 722, 1339
StyI	CCWWGG	1 cut(s)	1247
TaaI	ACNGT	5 cut(s)	8, 109, 393, 616, 797
TaqI	TCGA	4 cut(s)	314, 324, 780, 862
TatI	WGTACW	1 cut(s)	1410
TauI	GCSGC	2 cut(s)	710, 942
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	9 cut(s)	30, 278, 663, 909, 930, 980, 1118, 1226, 1332
Tru9I	TTAA	9 cut(s)	30, 278, 663, 909, 930, 980, 1118, 1226, 1332
TscAI	CASTG	2 cut(s)	591, 1281
TseFI	GTSAC	2 cut(s)	11, 791
TseI	GCWGC	6 cut(s)	359, 672, 913, 950, 1241, 1360
Tsp45I	GTSAC	2 cut(s)	11, 791
TspDTI	ATGAA	2 cut(s)	765, 1374
TspRI	CASTG	2 cut(s)	591, 1281
VpaK11BI	GGWCC	2 cut(s)	176, 576
XapI	RAATTY	3 cut(s)	168, 463, 754
XceI	RCATGY	2 cut(s)	939, 1221
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.