Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Forward (+)

36251268 .. 36256179

Gene Structure 4912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1250400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGATTGTTTAAAGGCTGTTATTCGCCATAAAGGTTCTTTGTGCTGCCAGTTATTATTATTCTTTATCTGGTTATCCAGTTTCCAAGATGTCATGGCAGTGCAGACAGTATTTGACCAAAGTCATGCTTCTTCCGTGGCAGAGCTAGGCCTAGCTAATCCACCTACTACTGAGTTCTTTGATCCCATTGAAATATCACCGGCTGTTATTCCTAATTACCCAAATCCTGCAGATGAACCTTCGCAACCATTGTACCCGAATTTTCCGACAAGATATGAGCCTGTTTTAACCGGGAAGTGTCCTGTGAATTTTTCTACTATATCAAGTTTAATGGATAAGACAGCTACTGATTGCTTTCAACCTTTGGCGGCAATAGTAGGAAATGTAATATGTTGCCCGCAGTTTAGTAGTTTGATCCGCATCTTCCAGGGTCTCTATAGCTTCAACTCTGATAAGTTGGTTTTGCAAAATTCAGTTGCGAATGATTGTTTTAAGGATATCATTAGTATCTTAGCCAGTAGAGGTGCAAACAGTTCAGTACCTACACTTTGCTCCATAAATTCGTCGAATCTTACGGGTGGGTCCTGTCCAGTGAAGGACATTAATACCTTTGAGAAAACAGTAAATACAAGTAGATTACTGGAGGCCTGCACAACTGTTGACCCTCTCAAAGAGTGCTGCAGACCAATTTGCCAGCATGCAATCACGGATGCTGCACTGGGGATCTCAGGAAAACAATTGATGATGAATGAGAACAAAAATTTAGCTGGTGGGCTTAATTATACTGATACTCTAAGTGATTGTAAAGACGTGGTTTTTTCATATCTTTCAAGGAAACTCTCGTCAGATGCTGCCAATACTGCATTTCGGATATTATCTGCCTGCAAAGTTAACAAAGTCTGCCCTCTGGAATTTAAGCAGCCTTCAGAAGTAGTTAAAGCATGTCGCAATGTTGCTGCCCCAAGTCCTTCCTGTTGTAGCTCATTAAACACTTACATGTTGGGAATACAAAAGCAAATGTTAATTACAAATAGACAAGCCATAATCTGTGCTTCAGTGTTTGGGTCCATGTTGAGAAAAGGCGGGGTGTTGGAAAATGTTTATGAGCTTTGTGATATTGACTTGAAAGACTTTAGCGTTCAAGCTGAATACATGCAACAAGGTTGTTTACTTCGAAATTTGCCTGCAGATGGGATATTTGACAATTCAACAGGTTTCAGCTTTACATGTGATTTGAGTGACAACATTGCAGCACCATGGCCTTCATCTTCCTCAGTTTCATCGTTGTCCTTTTGTGCGCCTGAGATGTCATTGCCTGCACTACCAACATCGGAGACTTTTAAAAATCCTGGCAGTCGTGGTGGTGAGCTGGAATTTATGGTACCCGTTTTTTCATTTTTGGTTTTGGGTACTCTGTTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

51.41

Weight (kDa)

5.09

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	97 - 252	2.5e-22	SPARK
At1g61900	PF26584	299 - 372	3.4e-31	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1381
AccB1I	GGYRCC	1 cut(s)	1381
AciI	CCGC	4 cut(s)	368, 398, 418, 1083
AclWI	GGATC	3 cut(s)	176, 409, 731
AcsI	RAATTY	8 cut(s)	259, 307, 469, 559, 760, 911, 1177, 1373
AcuI	CTGAAG	2 cut(s)	909, 1038
AfaI	GTAC	5 cut(s)	254, 540, 1383, 1411, 1421
AfiI	CCNNNNNNNGG	1 cut(s)	1190
AflIII	ACRYGT	2 cut(s)	996, 1226
AgsI	TTSAA	7 cut(s)	191, 359, 445, 831, 1126, 1142, 1209
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	2 cut(s)	426, 1348
Alw26I	GTCTC	2 cut(s)	437, 1328
AlwI	GGATC	3 cut(s)	176, 409, 731
AlwNI	CAGNNNCTG	2 cut(s)	347, 851
AoxI	GGCC	3 cut(s)	148, 645, 1259
ApeKI	GCWGC	7 cut(s)	45, 678, 713, 851, 919, 956, 1250
ApoI	RAATTY	8 cut(s)	259, 307, 469, 559, 760, 911, 1177, 1373
AseI	ATTAAT	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	1381
AspLEI	GCGC	1 cut(s)	1300
AspS9I	GGNCC	2 cut(s)	582, 1065
AsuC2I	CCSGG	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	189, 1376
AsuII	TTCGAA	1 cut(s)	1174
AvaII	GGWCC	2 cut(s)	582, 1065
BaeI	ACNNNNGTAYC	2 cut(s)	236, 269
BanI	GGYRCC	1 cut(s)	1381
BbvI	GCAGC	7 cut(s)	32, 665, 700, 838, 931, 943, 1262
BccI	CCATC	1 cut(s)	1184
BciT130I	CCWGG	2 cut(s)	428, 1350
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	437, 1328
BfaI	CTAG	2 cut(s)	146, 152
BfmI	CTRYAG	4 cut(s)	228, 436, 679, 1185
BisI	GCNGC	8 cut(s)	46, 369, 679, 714, 852, 920, 957, 1251
BlsI	GCNGC	8 cut(s)	47, 370, 680, 715, 853, 921, 958, 1252
Bme1390I	CCNGG	3 cut(s)	292, 428, 1350
Bme18I	GGWCC	2 cut(s)	582, 1065
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	2 cut(s)	582, 1065
BmiI	GGNNCC	3 cut(s)	583, 1066, 1383
BmrFI	CCNGG	3 cut(s)	292, 428, 1350
BmrI	ACTGGG	1 cut(s)	728
BmsI	GCATC	3 cut(s)	429, 700, 838
BmuI	ACTGGG	1 cut(s)	728
BoxI	GACNNNNGTC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	662
Bpu14I	TTCGAA	1 cut(s)	1174
BpuMI	CCSGG	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	419
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	3 cut(s)	135, 427, 1256
Bsc4I	CCNNNNNNNGG	1 cut(s)	1190
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	6 cut(s)	49, 78, 516, 590, 645, 723
Bse3DI	GCAATG	3 cut(s)	955, 1245, 1310
Bse8I	GATNNNNATC	1 cut(s)	419
BseBI	CCWGG	2 cut(s)	428, 1350
BseDI	CCNNGG	3 cut(s)	135, 427, 1256
BseGI	GGATG	1 cut(s)	715
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	1 cut(s)	1190
BseMI	GCAATG	3 cut(s)	955, 1245, 1310
BseMII	CTCAG	4 cut(s)	162, 741, 1287, 1293
BseNI	ACTGG	6 cut(s)	49, 78, 516, 590, 645, 723
BseXI	GCAGC	7 cut(s)	32, 665, 700, 838, 931, 943, 1262
BsgI	GTGCAG	4 cut(s)	122, 634, 699, 1302
BshFI	GGCC	3 cut(s)	150, 647, 1261
BshNI	GGYRCC	1 cut(s)	1381
BsiSI	CCGG	2 cut(s)	200, 291
BslI	CCNNNNNNNGG	1 cut(s)	1190
BsmAI	GTCTC	2 cut(s)	437, 1328
BsnI	GGCC	3 cut(s)	150, 647, 1261
Bso31I	GGTCTC	1 cut(s)	437
Bsp119I	TTCGAA	1 cut(s)	1174
Bsp143I	GATC	3 cut(s)	181, 414, 723
Bsp19I	CCATGG	1 cut(s)	1256
BspACI	CCGC	4 cut(s)	368, 398, 418, 1083
BspANI	GGCC	3 cut(s)	150, 647, 1261
BspCNI	CTCAG	4 cut(s)	163, 740, 1286, 1294
BspLI	GGNNCC	3 cut(s)	583, 1066, 1383
BspMAI	CTGCAG	3 cut(s)	232, 683, 1189
BspPI	GGATC	3 cut(s)	176, 409, 731
BspT104I	TTCGAA	1 cut(s)	1174
BspT107I	GGYRCC	1 cut(s)	1381
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	3 cut(s)	955, 1245, 1310
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	6 cut(s)	49, 78, 516, 590, 645, 723
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	3 cut(s)	135, 427, 1256
BssMI	GATC	3 cut(s)	181, 414, 723
BssT1I	CCWWGG	1 cut(s)	1256
Bst2UI	CCWGG	2 cut(s)	428, 1350
Bst4CI	ACNGT	4 cut(s)	109, 533, 622, 658
BstBI	TTCGAA	1 cut(s)	1174
BstC8I	GCNNGC	7 cut(s)	398, 649, 695, 699, 883, 1185, 1317
BstDEI	CTNAG	6 cut(s)	171, 511, 727, 794, 1273, 1302
BstDSI	CCRYGG	2 cut(s)	135, 1256
BstF5I	GGATG	1 cut(s)	715
BstHHI	GCGC	1 cut(s)	1300
BstKTI	GATC	3 cut(s)	184, 417, 726
BstMAI	GTCTC	2 cut(s)	437, 1328
BstMBI	GATC	3 cut(s)	181, 414, 723
BstMWI	GCNNNNNNNGC	1 cut(s)	860
BstNI	CCWGG	2 cut(s)	428, 1350
BstNSI	RCATGY	5 cut(s)	701, 945, 1000, 1156, 1230
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	290, 426, 1348
BstSFI	CTRYAG	4 cut(s)	228, 436, 679, 1185
BstV1I	GCAGC	7 cut(s)	32, 665, 700, 838, 931, 943, 1262
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	3 cut(s)	150, 647, 1261
BtgI	CCRYGG	2 cut(s)	135, 1256
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	1 cut(s)	715
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	4 cut(s)	105, 597, 716, 1062
Cac8I	GCNNGC	7 cut(s)	398, 649, 695, 699, 883, 1185, 1317
CaiI	CAGNNNCTG	2 cut(s)	347, 851
CfoI	GCGC	1 cut(s)	1300
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	582, 1065
Csp6I	GTAC	5 cut(s)	253, 539, 1382, 1410, 1420
CviAII	CATG	9 cut(s)	94, 125, 698, 942, 997, 1069, 1153, 1227, 1257
CviQI	GTAC	5 cut(s)	253, 539, 1382, 1410, 1420
DdeI	CTNAG	6 cut(s)	171, 511, 727, 794, 1273, 1302
DpnI	GATC	3 cut(s)	183, 416, 725
DpnII	GATC	3 cut(s)	181, 414, 723
DraI	TTTAAA	2 cut(s)	12, 1342
Eco130I	CCWWGG	1 cut(s)	1256
Eco147I	AGGCCT	2 cut(s)	150, 647
Eco31I	GGTCTC	1 cut(s)	437
Eco32I	GATATC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	582, 1065
Eco57I	CTGAAG	2 cut(s)	909, 1038
EcoO109I	RGGNCCY	1 cut(s)	582
EcoRII	CCWGG	2 cut(s)	426, 1348
EcoRV	GATATC	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	1256
ErhI	CCWWGG	1 cut(s)	1256
FaeI	CATG	9 cut(s)	97, 128, 701, 945, 1000, 1072, 1156, 1230, 1260
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FatI	CATG	9 cut(s)	93, 124, 697, 941, 996, 1068, 1152, 1226, 1256
FauI	CCCGC	2 cut(s)	405, 1076
Fnu4HI	GCNGC	8 cut(s)	46, 369, 679, 714, 852, 920, 957, 1251
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	8 cut(s)	46, 369, 679, 714, 852, 920, 957, 1251
FspBI	CTAG	2 cut(s)	146, 152
GlaI	GCGC	1 cut(s)	1299
GluI	GCNGC	8 cut(s)	46, 369, 679, 714, 852, 920, 957, 1251
GsuI	CTGGAG	1 cut(s)	662
HaeIII	GGCC	3 cut(s)	150, 647, 1261
HapII	CCGG	2 cut(s)	200, 291
HhaI	GCGC	1 cut(s)	1300
Hin1II	CATG	9 cut(s)	97, 128, 701, 945, 1000, 1072, 1156, 1230, 1260
Hin6I	GCGC	1 cut(s)	1298
HinP1I	GCGC	1 cut(s)	1298
HincII	GTYRAC	2 cut(s)	661, 892
HindII	GTYRAC	2 cut(s)	661, 892
HinfI	GANTC	1 cut(s)	568
HpaI	GTTAAC	1 cut(s)	892
HpaII	CCGG	2 cut(s)	200, 291
HphI	GGTGA	2 cut(s)	189, 1376
Hpy166II	GTNNAC	3 cut(s)	661, 892, 1169
Hpy188I	TCNGA	6 cut(s)	267, 451, 847, 870, 928, 1333
Hpy188III	TCNNGA	2 cut(s)	729, 908
Hpy8I	GTNNAC	3 cut(s)	661, 892, 1169
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	5 cut(s)	249, 589, 933, 978, 1272
HpyCH4III	ACNGT	4 cut(s)	109, 533, 622, 658
HpyCH4IV	ACGT	1 cut(s)	810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	860
HpyF3I	CTNAG	6 cut(s)	171, 511, 727, 794, 1273, 1302
HpySE526I	ACGT	1 cut(s)	810
Hsp92II	CATG	9 cut(s)	97, 128, 701, 945, 1000, 1072, 1156, 1230, 1260
HspAI	GCGC	1 cut(s)	1298
KpnI	GGTACC	1 cut(s)	1385
KspAI	GTTAAC	1 cut(s)	892
Kzo9I	GATC	3 cut(s)	181, 414, 723
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	7 cut(s)	32, 665, 700, 838, 931, 943, 1262
LweI	GCATC	3 cut(s)	429, 700, 838
MaeI	CTAG	2 cut(s)	146, 152
MaeII	ACGT	1 cut(s)	810
MaeIII	GTNAC	1 cut(s)	1238
MalI	GATC	3 cut(s)	183, 416, 725
MboI	GATC	3 cut(s)	181, 414, 723
MboII	GAAGA	3 cut(s)	123, 415, 1260
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	1 cut(s)	723
MmeI	TCCRAC	2 cut(s)	290, 1071
MnlI	CCTC	5 cut(s)	515, 637, 675, 915, 1282
MslI	CAYNNNNRTG	2 cut(s)	98, 995
MspI	CCGG	2 cut(s)	200, 291
MspR9I	CCNGG	3 cut(s)	292, 428, 1350
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	2 cut(s)	428, 1350
MwoI	GCNNNNNNNGC	1 cut(s)	860
NciI	CCSGG	1 cut(s)	292
NcoI	CCATGG	1 cut(s)	1256
NdeII	GATC	3 cut(s)	181, 414, 723
NlaIII	CATG	9 cut(s)	97, 128, 701, 945, 1000, 1072, 1156, 1230, 1260
NlaIV	GGNNCC	3 cut(s)	583, 1066, 1383
NmuCI	GTSAC	1 cut(s)	1238
NspI	RCATGY	5 cut(s)	701, 945, 1000, 1156, 1230
NspV	TTCGAA	1 cut(s)	1174
PaeI	GCATGC	1 cut(s)	701
PceI	AGGCCT	2 cut(s)	150, 647
PciI	ACATGT	2 cut(s)	996, 1226
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	8 cut(s)	47, 370, 680, 715, 853, 921, 958, 1252
PpuMI	RGGWCCY	1 cut(s)	582
PscI	ACATGT	2 cut(s)	996, 1226
PshAI	GACNNNNGTC	1 cut(s)	120
PshBI	ATTAAT	1 cut(s)	603
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	426, 1348
PspGI	CCWGG	2 cut(s)	426, 1348
PspN4I	GGNNCC	3 cut(s)	583, 1066, 1383
PspPI	GGNCC	2 cut(s)	582, 1065
PspPPI	RGGWCCY	1 cut(s)	582
PstI	CTGCAG	3 cut(s)	232, 683, 1189
PstNI	CAGNNNCTG	2 cut(s)	347, 851
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	5 cut(s)	254, 540, 1383, 1411, 1421
RsaNI	GTAC	5 cut(s)	253, 539, 1382, 1410, 1420
RseI	CAYNNNNRTG	2 cut(s)	98, 995
SatI	GCNGC	8 cut(s)	46, 369, 679, 714, 852, 920, 957, 1251
Sau3AI	GATC	3 cut(s)	181, 414, 723
Sau96I	GGNCC	2 cut(s)	582, 1065
ScrFI	CCNGG	3 cut(s)	292, 428, 1350
SfaNI	GCATC	3 cut(s)	429, 700, 838
SfcI	CTRYAG	4 cut(s)	228, 436, 679, 1185
SfuI	TTCGAA	1 cut(s)	1174
SinI	GGWCC	2 cut(s)	582, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	98, 995
SphI	GCATGC	1 cut(s)	701
SseBI	AGGCCT	2 cut(s)	150, 647
SsiI	CCGC	4 cut(s)	368, 398, 418, 1083
SspMI	CTAG	2 cut(s)	146, 152
StuI	AGGCCT	2 cut(s)	150, 647
StyD4I	CCNGG	3 cut(s)	290, 426, 1348
StyI	CCWWGG	1 cut(s)	1256
TaaI	ACNGT	4 cut(s)	109, 533, 622, 658
TaiI	ACGT	1 cut(s)	813
TaqI	TCGA	2 cut(s)	566, 1174
TatI	WGTACW	1 cut(s)	1419
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	568
TscAI	CASTG	4 cut(s)	105, 597, 723, 1062
TseFI	GTSAC	1 cut(s)	1238
TseI	GCWGC	7 cut(s)	45, 678, 713, 851, 919, 956, 1250
Tsp45I	GTSAC	1 cut(s)	1238
TspDTI	ATGAA	6 cut(s)	249, 761, 810, 1254, 1269, 1383
TspGWI	ACGGA	2 cut(s)	124, 722
TspRI	CASTG	4 cut(s)	105, 597, 723, 1062
VpaK11BI	GGWCC	2 cut(s)	582, 1065
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	8 cut(s)	259, 307, 469, 559, 760, 911, 1177, 1373
XceI	RCATGY	5 cut(s)	701, 945, 1000, 1156, 1230
XspI	CTAG	2 cut(s)	146, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.