Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

10717968 .. 10718943

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0068800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTCTCCCTTCTGAGAGCGTTTCTAGGGTTTCTAGCCGTGGTTTTGCATGGCGGGTTTCCCGTTTCTTCTGGTGCTTTTGAAGACAGCGGCGAGGGAGTGTTCCATCAATGCCTATTCCTGACTCCTGCAAGGGAGATTTCTCGACTGCGATTGATATCTGTTGGTGGTAGTCGTGTACCTTGGACGGGAGGTAGCGCTCTCCTTCCTTTTCCCCTTTTCCATGGTGGTGACAACGACGGCGGTATAGGTGGTATTTTTGGTGATAAAGATGGTGGTATGGGTTTGTGTTCTGGGAGTACGATCGGTGGTGAAGATAGTGTTCCCTCAGATTTGGATTGTTGGGATTCGGGGAGGCTTGCCGGTGGGATGGATTTGTTCTACGTTGGGTTGGCTTGGGACTGGGATGTAAGCTGGATGAAGATTGCTAGAGCGGGCATCTGTGTCGGTGCCTGGCTTGGTGATGATGATATCTGGCTGGGCTGGGAGCGGTCGATTTCTATGGAGGACGAAGGGATCGGTGTTGATCCCGATTCTTCTTCTGTGACAGAGGTTGCGGTCGGGTTAGAAGATCTGGGGATCGGCGCTGAAGGGCTTTGGTGGCTGACGATTGGGCATCTAGTTAGGCCGGTGACGTCAACAGAGCCATTGTACTTGAGGCTGGGTTCTACGCGGCTTTTCTTTGCCCGAGATAGGGTTAACCTCGGCTCCGGTGGTGGCAACGGCGGCGTAGGGGGCGATGATATGTGCTGGGGTGTCTCTTCTACTTTCGGCGGCAGAGGCGGTGGCTGGCCGATGACGGCGGCGGGGAGGATGGTCGCTGGGCTTCTAGGGTTTACTCTAGTGGCTTTTGGTGGGTCTGGGCTCATTGGCGCTTGGGCCTTGAAGGCTGTTTGGCTGGTTTGGGCCTCTATGGCCCAGAGTACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

310

Amino Acids

32.31

Weight (kDa)

4.49

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	638
AccB1I	GGYRCC	1 cut(s)	449
AccBSI	CCGCTC	2 cut(s)	434, 490
AccII	CGCG	1 cut(s)	673
AclWI	GGATC	3 cut(s)	521, 524, 587
AcoI	YGGCCR	1 cut(s)	791
AcuI	CTGAAG	1 cut(s)	609
AcyI	GRCGYC	1 cut(s)	635
AfaI	GTAC	4 cut(s)	180, 301, 653, 925
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	3 cut(s)	188, 693, 694
AgsI	TTSAA	2 cut(s)	83, 886
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	763
AlwI	GGATC	3 cut(s)	521, 524, 587
Ama87I	CYCGRG	1 cut(s)	687
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	5 cut(s)	626, 791, 879, 906, 915
AspLEI	GCGC	3 cut(s)	200, 587, 875
AspS9I	GGNCC	3 cut(s)	879, 906, 916
AsuHPI	GGTGA	5 cut(s)	242, 275, 323, 473, 643
AvaI	CYCGRG	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	4 cut(s)	114, 266, 364, 808
BceAI	ACGGC	4 cut(s)	23, 256, 739, 816
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BciT130I	CCWGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	763
BfaI	CTAG	6 cut(s)	26, 35, 429, 620, 830, 842
BfoI	RGCGCY	3 cut(s)	201, 588, 876
BglI	GCCNNNNNGGC	2 cut(s)	887, 914
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	5 cut(s)	91, 674, 727, 775, 804
BlsI	GCNGC	5 cut(s)	92, 675, 728, 776, 805
BmcAI	AGTACT	1 cut(s)	925
Bme1390I	CCNGG	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	687
BmgT120I	GGNCC	3 cut(s)	879, 906, 916
BmiI	GGNNCC	2 cut(s)	451, 709
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	2 cut(s)	447, 625
BmuI	ACTGGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	635
BsaJI	CCNNGG	4 cut(s)	39, 182, 223, 703
BsaWI	WCCGGW	1 cut(s)	710
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 693, 694
Bse118I	RCCGGY	2 cut(s)	362, 628
Bse1I	ACTGG	1 cut(s)	407
Bse8I	GATNNNNATC	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	4 cut(s)	39, 182, 223, 703
BseGI	GGATG	4 cut(s)	375, 412, 423, 819
BseJI	GATNNNNATC	1 cut(s)	157
BseLI	CCNNNNNNNGG	3 cut(s)	188, 693, 694
BseMII	CTCAG	2 cut(s)	5, 342
BseNI	ACTGG	1 cut(s)	407
BseYI	CCCAGC	5 cut(s)	478, 483, 661, 750, 821
Bsh1236I	CGCG	1 cut(s)	673
Bsh1285I	CGRYCG	3 cut(s)	306, 494, 561
BshFI	GGCC	5 cut(s)	628, 793, 881, 908, 917
BshNI	GGYRCC	1 cut(s)	449
BsiEI	CGRYCG	3 cut(s)	306, 494, 561
BsiHKCI	CYCGRG	1 cut(s)	687
BsiSI	CCGG	3 cut(s)	363, 629, 711
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	3 cut(s)	188, 693, 694
BsmAI	GTCTC	1 cut(s)	763
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	5 cut(s)	628, 793, 881, 908, 917
BsoBI	CYCGRG	1 cut(s)	687
Bsp1286I	GDGCHC	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	303, 516, 526, 571, 579
Bsp19I	CCATGG	1 cut(s)	223
BspANI	GGCC	5 cut(s)	628, 793, 881, 908, 917
BspCNI	CTCAG	2 cut(s)	6, 341
BspFNI	CGCG	1 cut(s)	673
BspLI	GGNNCC	2 cut(s)	451, 709
BspPI	GGATC	3 cut(s)	521, 524, 587
BspT107I	GGYRCC	1 cut(s)	449
BsrBI	CCGCTC	2 cut(s)	434, 490
BsrFI	RCCGGY	2 cut(s)	362, 628
BsrI	ACTGG	1 cut(s)	407
BssAI	RCCGGY	2 cut(s)	362, 628
BssECI	CCNNGG	4 cut(s)	39, 182, 223, 703
BssMI	GATC	5 cut(s)	303, 516, 526, 571, 579
BssNI	GRCGYC	1 cut(s)	635
BssT1I	CCWWGG	2 cut(s)	182, 223
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	928
Bst6I	CTCTTC	1 cut(s)	766
BstACI	GRCGYC	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	360, 436, 791
BstDEI	CTNAG	2 cut(s)	14, 328
BstDSI	CCRYGG	2 cut(s)	39, 223
BstF5I	GGATG	4 cut(s)	375, 412, 423, 819
BstFNI	CGCG	1 cut(s)	673
BstH2I	RGCGCY	3 cut(s)	201, 588, 876
BstHHI	GCGC	3 cut(s)	200, 587, 875
BstKTI	GATC	5 cut(s)	306, 519, 529, 574, 582
BstMAI	GTCTC	1 cut(s)	763
BstMBI	GATC	5 cut(s)	303, 516, 526, 571, 579
BstMCI	CGRYCG	3 cut(s)	306, 494, 561
BstMWI	GCNNNNNNNGC	6 cut(s)	601, 726, 735, 780, 887, 914
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	452
BstUI	CGCG	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	5 cut(s)	628, 793, 881, 908, 917
BtgI	CCRYGG	2 cut(s)	39, 223
BtgZI	GCGATG	1 cut(s)	753
BtsCI	GGATG	4 cut(s)	375, 412, 423, 819
Cac8I	GCNNGC	3 cut(s)	360, 436, 791
CfoI	GCGC	3 cut(s)	200, 587, 875
Cfr10I	RCCGGY	2 cut(s)	362, 628
Cfr13I	GGNCC	3 cut(s)	879, 906, 916
Csp6I	GTAC	4 cut(s)	179, 300, 652, 924
CviAII	CATG	2 cut(s)	50, 224
CviQI	GTAC	4 cut(s)	179, 300, 652, 924
DdeI	CTNAG	2 cut(s)	14, 328
DpnI	GATC	5 cut(s)	305, 518, 528, 573, 581
DpnII	GATC	5 cut(s)	303, 516, 526, 571, 579
EaeI	YGGCCR	1 cut(s)	791
Eam1104I	CTCTTC	1 cut(s)	766
EarI	CTCTTC	1 cut(s)	766
Eco130I	CCWWGG	2 cut(s)	182, 223
Eco24I	GRGCYC	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	159, 472
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	687
EcoRII	CCWGG	1 cut(s)	452
EcoRV	GATATC	2 cut(s)	159, 472
EcoT14I	CCWWGG	2 cut(s)	182, 223
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	2 cut(s)	182, 223
FaeI	CATG	2 cut(s)	53, 227
FaiI	YATR	7 cut(s)	51, 225, 248, 281, 503, 746, 914
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	49, 223
FauI	CCCGC	3 cut(s)	47, 427, 799
Fnu4HI	GCNGC	5 cut(s)	91, 674, 727, 775, 804
FokI	GGATG	4 cut(s)	382, 419, 430, 826
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	5 cut(s)	91, 674, 727, 775, 804
FspBI	CTAG	6 cut(s)	26, 35, 429, 620, 830, 842
GlaI	GCGC	3 cut(s)	199, 586, 874
GluI	GCNGC	5 cut(s)	91, 674, 727, 775, 804
GsaI	CCCAGC	5 cut(s)	482, 487, 665, 754, 825
HaeII	RGCGCY	3 cut(s)	201, 588, 876
HaeIII	GGCC	5 cut(s)	628, 793, 881, 908, 917
HapII	CCGG	3 cut(s)	363, 629, 711
HhaI	GCGC	3 cut(s)	200, 587, 875
Hin1I	GRCGYC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	53, 227
Hin6I	GCGC	3 cut(s)	198, 585, 873
HinP1I	GCGC	3 cut(s)	198, 585, 873
HincII	GTYRAC	2 cut(s)	639, 700
HindII	GTYRAC	2 cut(s)	639, 700
HinfI	GANTC	3 cut(s)	124, 347, 533
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	3 cut(s)	363, 629, 711
HphI	GGTGA	5 cut(s)	242, 275, 323, 473, 643
Hpy166II	GTNNAC	4 cut(s)	179, 639, 700, 837
Hpy188I	TCNGA	2 cut(s)	15, 331
Hpy188III	TCNNGA	3 cut(s)	121, 144, 530
Hpy8I	GTNNAC	4 cut(s)	179, 639, 700, 837
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	5 cut(s)	20, 215, 506, 584, 880
HpyCH4III	ACNGT	1 cut(s)	928
HpyCH4IV	ACGT	2 cut(s)	384, 635
HpyCH4V	TGCA	2 cut(s)	49, 131
HpyF10VI	GCNNNNNNNGC	6 cut(s)	601, 726, 735, 780, 887, 914
HpyF3I	CTNAG	2 cut(s)	14, 328
HpySE526I	ACGT	2 cut(s)	384, 635
Hsp92I	GRCGYC	1 cut(s)	635
Hsp92II	CATG	2 cut(s)	53, 227
HspAI	GCGC	3 cut(s)	198, 585, 873
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	303, 516, 526, 571, 579
LmnI	GCTCC	2 cut(s)	487, 713
LweI	GCATC	2 cut(s)	447, 625
MaeI	CTAG	6 cut(s)	26, 35, 429, 620, 830, 842
MaeII	ACGT	2 cut(s)	384, 635
MaeIII	GTNAC	3 cut(s)	230, 544, 631
MalI	GATC	5 cut(s)	305, 518, 528, 573, 581
MbiI	CCGCTC	2 cut(s)	434, 490
MboI	GATC	5 cut(s)	303, 516, 526, 571, 579
MboII	GAAGA	8 cut(s)	60, 95, 326, 433, 528, 531, 581, 753
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	867
MlyI	GAGTC	1 cut(s)	118
MseI	TTAA	2 cut(s)	699, 931
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	3 cut(s)	363, 629, 711
MspR9I	CCNGG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	6 cut(s)	601, 726, 735, 780, 887, 914
NcoI	CCATGG	1 cut(s)	223
NdeII	GATC	5 cut(s)	303, 516, 526, 571, 579
NlaIII	CATG	2 cut(s)	53, 227
NlaIV	GGNNCC	2 cut(s)	451, 709
NmeAIII	GCCGAG	1 cut(s)	684
NmuCI	GTSAC	3 cut(s)	230, 544, 631
PfeI	GAWTC	2 cut(s)	347, 533
PkrI	GCNGC	5 cut(s)	92, 675, 728, 776, 805
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	452
PspFI	CCCAGC	5 cut(s)	478, 483, 661, 750, 821
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	451, 709
PspPI	GGNCC	3 cut(s)	879, 906, 916
PsuI	RGATCY	1 cut(s)	571
PvuI	CGATCG	1 cut(s)	306
RsaI	GTAC	4 cut(s)	180, 301, 653, 925
RsaNI	GTAC	4 cut(s)	179, 300, 652, 924
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	699, 931
SatI	GCNGC	5 cut(s)	91, 674, 727, 775, 804
Sau3AI	GATC	5 cut(s)	303, 516, 526, 571, 579
Sau96I	GGNCC	3 cut(s)	879, 906, 916
ScaI	AGTACT	1 cut(s)	925
SchI	GAGTC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	867
SetI	ASST	8 cut(s)	184, 196, 253, 387, 416, 555, 638, 705
SfaNI	GCATC	2 cut(s)	447, 625
SfiI	GGCCNNNNNGGCC	1 cut(s)	914
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SspMI	CTAG	6 cut(s)	26, 35, 429, 620, 830, 842
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	2 cut(s)	182, 223
TaaI	ACNGT	1 cut(s)	928
TaiI	ACGT	2 cut(s)	387, 638
TaqI	TCGA	2 cut(s)	145, 494
TatI	WGTACW	2 cut(s)	651, 923
TauI	GCSGC	5 cut(s)	93, 676, 729, 777, 806
TfiI	GAWTC	2 cut(s)	347, 533
Tru1I	TTAA	2 cut(s)	699, 931
Tru9I	TTAA	2 cut(s)	699, 931
TseFI	GTSAC	3 cut(s)	230, 544, 631
Tsp45I	GTSAC	3 cut(s)	230, 544, 631
TspDTI	ATGAA	1 cut(s)	434
XspI	CTAG	6 cut(s)	26, 35, 429, 620, 830, 842
ZraI	GACGTC	1 cut(s)	636
ZrmI	AGTACT	1 cut(s)	925

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.