Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003452.1

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

74880 .. 76512

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003452.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atggactgttgtcagactcttagtcatctaaaaggttctttgtgctgtcagttattattattctttatctggttatccagttttcaagatgctgtggcattggagacggtctttgagcagagtcatgttcctcaaatgccagagcttgctaaaccaccttctagtggaatctttggtcctatagaaatatcacctgcagttattccacattatccagatcctgacgaaccctttccgccgatgtaccctacatttccaaccagatatgagcctgttttaactgggaaatgtcctgtcaatttctccgctatatcgagtatcattgaaaaaacagcatctgattgttcagaacctttggcagcacttgtaggaaatgtaatatgttgtccacagttcagtagtttgatccgcatcttccagggtctctacagcttcaactcggctaagttggttttgcaagattcagttgcaagtgattgttttacagatataatcagtatcttagccagatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.71

Weight (kDa)

4.6

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	202
Acc36I	ACCTGC	1 cut(s)	202
AciI	CCGC	3 cut(s)	236, 306, 409
AclWI	GGATC	2 cut(s)	212, 400
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	86, 326, 436
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	2 cut(s)	145, 432
AluI	AGCT	2 cut(s)	145, 432
Alw26I	GTCTC	2 cut(s)	98, 428
AlwI	GGATC	2 cut(s)	212, 400
AlwNI	CAGNNNCTG	2 cut(s)	221, 338
ApeKI	GCWGC	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	98, 428
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	3 cut(s)	180, 195, 427
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	176
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	419
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	79, 344, 420
BmuI	ACTGGG	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	9
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	78, 286
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	1 cut(s)	418
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	2 cut(s)	78, 286
BseXI	GCAGC	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	98, 428
BsmBI	CGTCTC	1 cut(s)	98
Bso31I	GGTCTC	1 cut(s)	428
Bsp143I	GATC	2 cut(s)	217, 405
BspACI	CCGC	3 cut(s)	236, 306, 409
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	212, 400
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	78, 286
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	217, 405
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	8, 109, 393
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	3 cut(s)	20, 444, 502
BstKTI	GATC	2 cut(s)	220, 408
BstMAI	GTCTC	2 cut(s)	98, 428
BstMBI	GATC	2 cut(s)	217, 405
BstNI	CCWGG	1 cut(s)	419
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	417
BstSFI	CTRYAG	3 cut(s)	180, 195, 427
BstV1I	GCAGC	1 cut(s)	371
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	2 cut(s)	221, 338
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	5 cut(s)	145, 271, 432, 443, 506
CviKI_1	RGCY	5 cut(s)	145, 271, 432, 443, 506
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	3 cut(s)	20, 444, 502
DpnI	GATC	2 cut(s)	219, 407
DpnII	GATC	2 cut(s)	217, 405
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	417
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	1 cut(s)	128
FaiI	YATR	6 cut(s)	126, 182, 267, 311, 382, 491
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	1 cut(s)	360
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	360
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	4 cut(s)	16, 121, 168, 461
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	15, 340, 349
Hpy188III	TCNNGA	3 cut(s)	86, 215, 221
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	3 cut(s)	8, 109, 393
HpyCH4V	TGCA	3 cut(s)	197, 457, 470
HpyF3I	CTNAG	3 cut(s)	20, 444, 502
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	2 cut(s)	217, 405
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	3 cut(s)	79, 344, 420
MaeI	CTAG	1 cut(s)	162
MalI	GATC	2 cut(s)	219, 407
MboI	GATC	2 cut(s)	217, 405
MboII	GAAGA	1 cut(s)	406
MflI	RGATCY	1 cut(s)	217
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	10, 130
MmeI	TCCRAC	1 cut(s)	281
MnlI	CCTC	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
NdeII	GATC	2 cut(s)	217, 405
NlaIII	CATG	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	168, 461
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	2 cut(s)	10, 129
PpsI	GAGTC	2 cut(s)	10, 129
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	199
PstNI	CAGNNNCTG	2 cut(s)	221, 338
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	217, 405
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	10, 130
ScrFI	CCNGG	1 cut(s)	419
SetI	ASST	6 cut(s)	37, 147, 160, 196, 355, 434
SfaNI	GCATC	3 cut(s)	79, 344, 420
SfcI	CTRYAG	3 cut(s)	180, 195, 427
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	3 cut(s)	236, 306, 409
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	8, 109, 393
TaqI	TCGA	1 cut(s)	314
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	168, 461
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TseI	GCWGC	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.