Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

32455413 .. 32462013

Gene Structure 6601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGACTGTTGTCAGACTCTTAGTCATCTAAAAGGTTCTTTGTGCTGTCAGTTATTATTATTCTTTATCTGGTTATCCAGTTTTCAAGATGCTGTGGCATTGGAGACGGTCTTTGAGCAAAGTCATGTTCCTCAAATGCCAGAGCTTGCTAAACCACCTTCTAGTGGAATCTTTGGTCCTATAGAAATATCACCCGCAGTTATTCCACATTATCCAGATCCTGACGAACCCTTTCCGCCGATGTACCCTACATTTCCAACCAGATATGAGCCTGTTTTAACTGGGAAATGTCCTGTCAATTTCTCCGCTATATCGAGTATCATTGAAAAAACAGCATCTGATTGTTCACAACCTTTGGCAGCACTTGTAGGAAATGTAATATGTTGTCCACAGTTCAGTAGTTTGATCCGCATCTTCCAGGGTCTCTACAGCTTCAACTCGGCTAAGTTGGTTTTGCAAGATTCAGTTGCAAGTGATTGTTTTACAGATATAATCAGTATCTTAGCCAGTAGGGGTGCAAACAGTACAATACCTACACTTTGCTCTGTAAAATCTTCAAATCTTACTGGTGGGTCCTGTCCAGTGAAGGATGTTAATACCTTTGAAAAAACAGTAAACACAAGCAGATTGCTGGAGGCCTGCATAGCTGTTGATCCTCTTAAAGAGTGCTGCCGACCAATTTGTCAACCTGCAATCATGGATGCTGCGCTTCAGATCTCCGGGAAGCAACTGCAGTTGGATGAGAATAAAAATTTGGTTGGTGAGCCGAATCATATCGACACTCCAAGTGACTGTAAAGGAGTGGTTTTTGCATATCTTTCAAGGAAGCTCTCGTCAGATGTTGTAAATACTGCATTTCGAATATTATCGGCCTGCAAAGTTAATAAAGTTTGTCCTTTGGATTTTAAGGAGCCTTCGGAAGTAATTAAAGCATGCCGCAATGTTGCTGCCCCAAGTCCTTCCTGCTGTAGCTCATTAAACATCTACATTGCAGGAATACAGAAGCAAATGTTGATTACAAACAGGCAAGCTATAATCTGTGCTACAGTGTTTGGTTCTATCTTAAGGAAGGGCGGGGTAATGACAAATATTTACGAGCTTTGTGATGTTGACTTAAAAGACTTCAGCATTCAAGCATATGGTCAACAAGGGTGTCTGCTTAGAAGCCTGCCTGCAGATGTGATGTTTGACAATTCAACTGGCTTCAGCTTTACATGTGATTTAAGTGATAATATTGCAGCTCCATGGCCTTCATCGTCCTCAATTTCATCAGTGTCCCTCTGTGGGCCTGGTAATCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

46.79

Weight (kDa)

5.16

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPARK	PF19160	94 - 248	9.5e-23	SPARK
At1g61900	PF26584	296 - 369	2.1e-31	At1g61900-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	681
Acc36I	ACCTGC	1 cut(s)	697
AciI	CCGC	6 cut(s)	195, 236, 306, 409, 937, 1074
AclWI	GGATC	3 cut(s)	212, 400, 647
AcsI	RAATTY	1 cut(s)	751
AcuI	CTGAAG	3 cut(s)	695, 1108, 1189
AfaI	GTAC	2 cut(s)	245, 526
AfiI	CCNNNNNNNGG	2 cut(s)	164, 1284
AflII	CTTAAG	1 cut(s)	1063
AflIII	ACRYGT	1 cut(s)	1214
AgsI	TTSAA	8 cut(s)	86, 326, 436, 558, 605, 822, 1133, 1197
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	2 cut(s)	417, 1288
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	9 cut(s)	145, 432, 647, 829, 972, 1031, 1099, 1209, 1241
AluI	AGCT	9 cut(s)	145, 432, 647, 829, 972, 1031, 1099, 1209, 1241
Alw26I	GTCTC	2 cut(s)	98, 428
AlwI	GGATC	3 cut(s)	212, 400, 647
AlwNI	CAGNNNCTG	2 cut(s)	221, 338
AoxI	GGCC	4 cut(s)	636, 870, 1247, 1286
ApeKI	GCWGC	5 cut(s)	359, 669, 704, 947, 1238
ApoI	RAATTY	1 cut(s)	751
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	709
AspS9I	GGNCC	3 cut(s)	176, 573, 1286
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	2 cut(s)	183, 773
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	2 cut(s)	176, 573
BbvI	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BciT130I	CCWGG	2 cut(s)	419, 1290
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	2 cut(s)	98, 428
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	6 cut(s)	180, 427, 731, 967, 1044, 1173
BfrI	CTTAAG	1 cut(s)	1063
BfuAI	ACCTGC	1 cut(s)	697
BglII	AGATCT	1 cut(s)	714
BisI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
BlsI	GCNGC	6 cut(s)	361, 671, 706, 938, 949, 1240
Bme1390I	CCNGG	3 cut(s)	419, 721, 1290
Bme18I	GGWCC	2 cut(s)	176, 573
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	176, 573, 1286
BmiI	GGNNCC	2 cut(s)	574, 912
BmrFI	CCNGG	3 cut(s)	419, 721, 1290
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	4 cut(s)	79, 344, 420, 691
BmuI	ACTGGG	1 cut(s)	291
BoxI	GACNNNNGTC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	653
Bpu14I	TTCGAA	1 cut(s)	859
BpuMI	CCSGG	1 cut(s)	721
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	418, 1244
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 1284
Bse1I	ACTGG	6 cut(s)	78, 286, 507, 571, 581, 1204
Bse3DI	GCAATG	2 cut(s)	946, 987
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	419, 1290
BseDI	CCNNGG	2 cut(s)	418, 1244
BseGI	GGATG	3 cut(s)	595, 706, 745
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	164, 1284
BseMI	GCAATG	2 cut(s)	946, 987
BseNI	ACTGG	6 cut(s)	78, 286, 507, 571, 581, 1204
BseXI	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BshFI	GGCC	4 cut(s)	638, 872, 1249, 1288
BsiSI	CCGG	1 cut(s)	720
BslFI	GGGAC	1 cut(s)	1261
BslI	CCNNNNNNNGG	2 cut(s)	164, 1284
BsmAI	GTCTC	2 cut(s)	98, 428
BsmBI	CGTCTC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	1261
BsmI	GAATGC	1 cut(s)	1128
BsnI	GGCC	4 cut(s)	638, 872, 1249, 1288
Bso31I	GGTCTC	1 cut(s)	428
Bsp119I	TTCGAA	1 cut(s)	859
Bsp143I	GATC	4 cut(s)	217, 405, 652, 714
Bsp19I	CCATGG	1 cut(s)	1244
BspACI	CCGC	6 cut(s)	195, 236, 306, 409, 937, 1074
BspANI	GGCC	4 cut(s)	638, 872, 1249, 1288
BspLI	GGNNCC	2 cut(s)	574, 912
BspMAI	CTGCAG	2 cut(s)	735, 1177
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	3 cut(s)	212, 400, 647
BspT104I	TTCGAA	1 cut(s)	859
BspTI	CTTAAG	1 cut(s)	1063
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	2 cut(s)	946, 987
BsrI	ACTGG	6 cut(s)	78, 286, 507, 571, 581, 1204
BssECI	CCNNGG	2 cut(s)	418, 1244
BssMI	GATC	4 cut(s)	217, 405, 652, 714
BssT1I	CCWWGG	1 cut(s)	1244
Bst2UI	CCWGG	2 cut(s)	419, 1290
Bst4CI	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
BstAFI	CTTAAG	1 cut(s)	1063
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	7 cut(s)	147, 640, 874, 934, 1029, 1169, 1173
BstDEI	CTNAG	4 cut(s)	20, 444, 502, 1160
BstDSI	CCRYGG	1 cut(s)	1244
BstF5I	GGATG	3 cut(s)	595, 706, 745
BstHHI	GCGC	1 cut(s)	709
BstKTI	GATC	4 cut(s)	220, 408, 655, 717
BstMAI	GTCTC	2 cut(s)	98, 428
BstMBI	GATC	4 cut(s)	217, 405, 652, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	644
BstNI	CCWGG	2 cut(s)	419, 1290
BstNSI	RCATGY	2 cut(s)	936, 1218
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	417, 719, 1288
BstSFI	CTRYAG	6 cut(s)	180, 427, 731, 967, 1044, 1173
BstV1I	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
BstX2I	RGATCY	2 cut(s)	217, 714
BstYI	RGATCY	2 cut(s)	217, 714
BsuRI	GGCC	4 cut(s)	638, 872, 1249, 1288
BtgI	CCRYGG	1 cut(s)	1244
BtsCI	GGATG	3 cut(s)	595, 706, 745
BtsIMutI	CAGTG	3 cut(s)	588, 1053, 1278
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	7 cut(s)	147, 640, 874, 934, 1029, 1169, 1173
CaiI	CAGNNNCTG	2 cut(s)	221, 338
CfoI	GCGC	1 cut(s)	709
Cfr13I	GGNCC	3 cut(s)	176, 573, 1286
Csp6I	GTAC	2 cut(s)	244, 525
CviAII	CATG	5 cut(s)	125, 697, 933, 1215, 1245
CviQI	GTAC	2 cut(s)	244, 525
DdeI	CTNAG	4 cut(s)	20, 444, 502, 1160
DpnI	GATC	4 cut(s)	219, 407, 654, 716
DpnII	GATC	4 cut(s)	217, 405, 652, 714
DrdI	GACNNNNNNGTC	1 cut(s)	681
DriI	GACNNNNNGTC	1 cut(s)	21
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	1244
Eco147I	AGGCCT	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	2 cut(s)	176, 573
Eco57I	CTGAAG	3 cut(s)	695, 1108, 1189
EcoO109I	RGGNCCY	1 cut(s)	573
EcoRII	CCWGG	2 cut(s)	417, 1288
EcoT14I	CCWWGG	1 cut(s)	1244
ErhI	CCWWGG	1 cut(s)	1244
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	5 cut(s)	128, 700, 936, 1218, 1248
FaqI	GGGAC	1 cut(s)	1261
FatI	CATG	5 cut(s)	124, 696, 932, 1214, 1244
FauI	CCCGC	2 cut(s)	202, 1067
FauNDI	CATATG	1 cut(s)	1138
Fnu4HI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
FokI	GGATG	3 cut(s)	602, 713, 752
Fsp4HI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	708
GluI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	4 cut(s)	638, 872, 1249, 1288
HapII	CCGG	1 cut(s)	720
HhaI	GCGC	1 cut(s)	709
Hin1II	CATG	5 cut(s)	128, 700, 936, 1218, 1248
Hin6I	GCGC	1 cut(s)	707
HinP1I	GCGC	1 cut(s)	707
HincII	GTYRAC	3 cut(s)	686, 1111, 1145
HindII	GTYRAC	3 cut(s)	686, 1111, 1145
HinfI	GANTC	4 cut(s)	16, 168, 461, 769
HpaII	CCGG	1 cut(s)	720
HphI	GGTGA	2 cut(s)	183, 773
Hpy166II	GTNNAC	6 cut(s)	347, 389, 616, 686, 1111, 1145
Hpy188I	TCNGA	5 cut(s)	15, 340, 714, 838, 919
Hpy188III	TCNNGA	4 cut(s)	86, 215, 221, 1298
Hpy8I	GTNNAC	6 cut(s)	347, 389, 616, 686, 1111, 1145
HpyAV	CCTTC	6 cut(s)	168, 580, 924, 969, 1063, 1260
HpyCH4III	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
HpyF10VI	GCNNNNNNNGC	1 cut(s)	644
HpyF3I	CTNAG	4 cut(s)	20, 444, 502, 1160
Hsp92II	CATG	5 cut(s)	128, 700, 936, 1218, 1248
HspAI	GCGC	1 cut(s)	707
Kzo9I	GATC	4 cut(s)	217, 405, 652, 714
LmnI	GCTCC	2 cut(s)	910, 1246
Lsp1109I	GCAGC	5 cut(s)	371, 656, 691, 934, 1250
LweI	GCATC	4 cut(s)	79, 344, 420, 691
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	4 cut(s)	219, 407, 654, 716
MboI	GATC	4 cut(s)	217, 405, 652, 714
MboII	GAAGA	2 cut(s)	406, 546
MflI	RGATCY	2 cut(s)	217, 714
MluCI	AATT	6 cut(s)	298, 678, 751, 924, 1192, 1263
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	2 cut(s)	281, 717
MnlI	CCTC	5 cut(s)	141, 628, 666, 1270, 1289
MroXI	GAANNNNTTC	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	1063
MspI	CCGG	1 cut(s)	720
MspR9I	CCNGG	3 cut(s)	419, 721, 1290
Mva1269I	GAATGC	1 cut(s)	1128
MvaI	CCWGG	2 cut(s)	419, 1290
MwoI	GCNNNNNNNGC	1 cut(s)	644
NciI	CCSGG	1 cut(s)	721
NcoI	CCATGG	1 cut(s)	1244
NdeI	CATATG	1 cut(s)	1138
NdeII	GATC	4 cut(s)	217, 405, 652, 714
NlaIII	CATG	5 cut(s)	128, 700, 936, 1218, 1248
NlaIV	GGNNCC	2 cut(s)	574, 912
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	1 cut(s)	788
NspI	RCATGY	2 cut(s)	936, 1218
NspV	TTCGAA	1 cut(s)	859
PaeI	GCATGC	1 cut(s)	936
PceI	AGGCCT	1 cut(s)	638
PciI	ACATGT	1 cut(s)	1214
PctI	GAATGC	1 cut(s)	1128
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	168, 461, 769
PfoI	TCCNGGA	1 cut(s)	719
PkrI	GCNGC	6 cut(s)	361, 671, 706, 938, 949, 1240
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	573
PscI	ACATGT	1 cut(s)	1214
PshAI	GACNNNNGTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	573
Psp6I	CCWGG	2 cut(s)	417, 1288
PspGI	CCWGG	2 cut(s)	417, 1288
PspN4I	GGNNCC	2 cut(s)	574, 912
PspPI	GGNCC	3 cut(s)	176, 573, 1286
PspPPI	RGGWCCY	1 cut(s)	573
PstI	CTGCAG	2 cut(s)	735, 1177
PstNI	CAGNNNCTG	2 cut(s)	221, 338
PsuI	RGATCY	2 cut(s)	217, 714
RsaI	GTAC	2 cut(s)	245, 526
RsaNI	GTAC	2 cut(s)	244, 525
SatI	GCNGC	6 cut(s)	360, 670, 705, 937, 948, 1239
Sau3AI	GATC	4 cut(s)	217, 405, 652, 714
Sau96I	GGNCC	3 cut(s)	176, 573, 1286
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	3 cut(s)	419, 721, 1290
SfaNI	GCATC	4 cut(s)	79, 344, 420, 691
SfcI	CTRYAG	6 cut(s)	180, 427, 731, 967, 1044, 1173
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	2 cut(s)	176, 573
SmlI	CTYRAG	1 cut(s)	1063
SmoI	CTYRAG	1 cut(s)	1063
SphI	GCATGC	1 cut(s)	936
Sse9I	AATT	6 cut(s)	298, 678, 751, 924, 1192, 1263
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	6 cut(s)	195, 236, 306, 409, 937, 1074
SspI	AATATT	3 cut(s)	864, 1090, 1234
SspMI	CTAG	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	3 cut(s)	417, 719, 1288
StyI	CCWWGG	1 cut(s)	1244
TaaI	ACNGT	7 cut(s)	8, 109, 393, 524, 613, 794, 1048
TaqI	TCGA	3 cut(s)	314, 777, 859
TasI	AATT	6 cut(s)	298, 678, 751, 924, 1192, 1263
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	939
TfiI	GAWTC	3 cut(s)	168, 461, 769
TscAI	CASTG	3 cut(s)	588, 1053, 1278
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	5 cut(s)	359, 669, 704, 947, 1238
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	2 cut(s)	1242, 1257
TspRI	CASTG	3 cut(s)	588, 1053, 1278
Vha464I	CTTAAG	1 cut(s)	1063
VpaK11BI	GGWCC	2 cut(s)	176, 573
XapI	RAATTY	1 cut(s)	751
XceI	RCATGY	2 cut(s)	936, 1218
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.