Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002345

Physical Location & Seq

Genomic Coordinates Reverse (-)

19829921 .. 19835928

Gene Structure 6008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G201300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGTTCTATGGGTTCAACATCTTCAGGTGGCACAGAGGGCTAGTTATGGACTGCTTTCAAACTGTTAGTCATCTCAAAGGTTCTCTGTGCTGTCAGTTATTATTATTCTTTATCTGGTTATCAAGTTTTCAAGAAGCAGTGGCATTGCAGACAGTCTATGAGCAAAGTCATGTTTCCTCCATTCCAGATCTAGCTAAACCACCTACTAGTGGACTCTTTGGTCCCATAGAAATATCACCTGCTGTTATTCCACATTACACAGATCCTGATGAGCCTTTTCCACCAATGTACCCAACTTTTCCAACTAGATATGAGCCTGTTTTAACTGGGAAGTGTCCTGTAAATTTCTCTGCTATATCGAGTATCATGGACAAAACAGCATCTGATTGTTCTCTACCCTTGGCAGCAGTTGTGGGAAATGTGATATGTTGCCCACAGTTTAGTAGTTTGATCCGCATCTTCCAGGGTCTCTATAGCTTCACATCTGATAAGTTGGCTTTGCAAAATTCGGTTGCAAATAATTGTTTTACAGACATTACCAATATCTTAGCCAGTAGGGGTGCGAACAGTACAATACCTACACTTTGCTCCATAAATTCAGTAAACCTTACAGGTGGGTCTTGTCCAGTGAAGGATGTTGTTTCCTTTGAGAAAGCAGTAAATTCAAGCAGATTACTGGAGGCCTGCACCACTGTTGATCCTCTTAAAGAGTGCTGCAGACCAATTTGTCAGCCTGCAATCATGGATGCTGCACTTAAGATTTCAGGAAAACAATTTTCGTTGAACGAGAATAAGAATTTGGTGGGTGAGTTATCTCATGTTGATACTTTGACTGACTGTAAAGGAGTGGTTTTTACCTATCTTTCAAGGAAACTCTCGCCAGATGCTGTAAATACTGCATTTCGAATATTATCTGCCTGCAAAGTTAACAAGGTTTGCCCTTTGGATTTTAAGCAGCCTACGGAAGTGATTAAAGAATGTCGCAGTGTTGCTGCCCCCGGTCCTTCCTGCTGTAGCTCATTAAACGCTTACATCTCAGGAATACAAAAGCAAATGTTAATTACAAATAGACAAGCTATAGTCTGTGCTACAATGTTTGGGTCCATGTTGCGGAAAGGAGGGGTCATGTCTAATATTTATGAGCTTTGTGATGTTGACTTGAAAGACTTTAGCATTCAAGCAGCATATGGTCAACAGGGGTGTCTACTTCGAAGCTTGCCCTCAGATATGATATTTGACAATTCAACCGGCTACAGCTTTACATGTGATTTGAGTGACAACATTGCAGCACCATGGCCTTCGTCATCCTCAATTTCCTCGTTCTCCCTTTGTGGGCCTGAGATGTCATTGCCTGCACTACCAACATCGGAGACTTTTAAAAATCCTGGCTGTCGTGGTGGTCGGGTGGAATTTCTGATACCCATTGTTTCATTTTTTATTTTCATTACCTTATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

487

Amino Acids

52.93

Weight (kDa)

6.23

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002345)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30700 AT2G30700
fragaria_vesca	FvH4_4g10670 FvH4_4g10670 FvH4_4g10670 FvH4_4g10670
malus_domestica	MD03G1229900.v1.1 MD11G1250400.v1.1
prunus_persica	Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.1G201300_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1 Prupe.4G179400_v2.0.a1
pyrus_communis	pycom03g17750 pycom11g22160
rosa_chinensis	RchiOBHm_Chr4g0406321
rosa_laevigata	RLG00000008775
rosa_multiflora	Rmu_sc0003452.1_g000013 Rmu_sc0010810.1_g000001
rosa_roxburghii	Rroxscaffold_5G00351050
rosa_rugosa	Rorug04G0068700 Rorug04G0068800 Rorug04G0068900 Rorug04G0069000 Rorug04G0069100
rosa_samantha	Rh4AG137300 Rh4AG137500 Rh4BG134900 Rh4CG145500 Rh4DG131700
rosa_wichuraiana	Rw4G011110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
AasI	GACNNNNNNGTC	2 cut(s)	219, 726
Acc36I	ACCTGC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	1204
AciI	CCGC	2 cut(s)	454, 1111
AclWI	GGATC	3 cut(s)	257, 445, 692
AcsI	RAATTY	6 cut(s)	343, 505, 595, 661, 796, 1409
AcuI	CTGAAG	1 cut(s)	7
AfaI	GTAC	3 cut(s)	290, 571, 1457
AfiI	CCNNNNNNNGG	3 cut(s)	209, 1110, 1332
AflII	CTTAAG	1 cut(s)	755
AflIII	ACRYGT	1 cut(s)	1262
AgsI	TTSAA	9 cut(s)	16, 59, 131, 666, 784, 867, 1162, 1178, 1245
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	462, 1384
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	7 cut(s)	194, 477, 1017, 1076, 1144, 1215, 1257
AluI	AGCT	7 cut(s)	194, 477, 1017, 1076, 1144, 1215, 1257
Alw26I	GTCTC	2 cut(s)	473, 1364
AlwI	GGATC	3 cut(s)	257, 445, 692
AlwNI	CAGNNNCTG	3 cut(s)	266, 383, 887
AoxI	GGCC	3 cut(s)	681, 1295, 1334
ApeKI	GCWGC	7 cut(s)	404, 714, 749, 955, 992, 1181, 1286
ApoI	RAATTY	6 cut(s)	343, 505, 595, 661, 796, 1409
ArsI	GACNNNNNNTTYG	2 cut(s)	52, 84
AspS9I	GGNCC	4 cut(s)	221, 1001, 1101, 1334
AsuC2I	CCSGG	1 cut(s)	999
AsuHPI	GGTGA	2 cut(s)	228, 818
AsuII	TTCGAA	2 cut(s)	904, 1210
AvaII	GGWCC	3 cut(s)	221, 1001, 1101
BaeI	ACNNNNGTAYC	2 cut(s)	272, 305
BbvI	GCAGC	7 cut(s)	416, 701, 736, 967, 979, 1193, 1298
BciT130I	CCWGG	2 cut(s)	464, 1386
BcnI	CCSGG	1 cut(s)	999
BcoDI	GTCTC	2 cut(s)	473, 1364
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	4 cut(s)	41, 191, 207, 306
BfmI	CTRYAG	5 cut(s)	472, 715, 1012, 1077, 1252
BfrI	CTTAAG	1 cut(s)	755
BfuAI	ACCTGC	1 cut(s)	247
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	7 cut(s)	405, 715, 750, 956, 993, 1182, 1287
BlsI	GCNGC	7 cut(s)	406, 716, 751, 957, 994, 1183, 1288
Bme1390I	CCNGG	3 cut(s)	464, 999, 1386
Bme18I	GGWCC	3 cut(s)	221, 1001, 1101
BmgT120I	GGNCC	4 cut(s)	221, 1001, 1101, 1334
BmiI	GGNNCC	2 cut(s)	223, 1102
BmrFI	CCNGG	3 cut(s)	464, 999, 1386
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	4 cut(s)	389, 465, 736, 874
BmuI	ACTGGG	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	698
Bpu14I	TTCGAA	2 cut(s)	904, 1210
BpuMI	CCSGG	1 cut(s)	999
BsaBI	GATNNNNATC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	4 cut(s)	399, 463, 997, 1292
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 1110, 1332
Bse118I	RCCGGY	1 cut(s)	1247
Bse1I	ACTGG	4 cut(s)	331, 552, 626, 681
Bse3DI	GCAATG	3 cut(s)	143, 1281, 1346
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	464, 1386
BseDI	CCNNGG	4 cut(s)	399, 463, 997, 1292
BseGI	GGATG	3 cut(s)	640, 751, 1304
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	3 cut(s)	209, 1110, 1332
BseMI	GCAATG	3 cut(s)	143, 1281, 1346
BseMII	CTCAG	3 cut(s)	1050, 1236, 1329
BseNI	ACTGG	4 cut(s)	331, 552, 626, 681
BseXI	GCAGC	7 cut(s)	416, 701, 736, 967, 979, 1193, 1298
BsgI	GTGCAG	3 cut(s)	670, 735, 1338
BshFI	GGCC	3 cut(s)	683, 1297, 1336
BsiSI	CCGG	2 cut(s)	999, 1248
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	209, 1110, 1332
BsmAI	GTCTC	2 cut(s)	473, 1364
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	1173
BsnI	GGCC	3 cut(s)	683, 1297, 1336
Bso31I	GGTCTC	1 cut(s)	473
Bsp119I	TTCGAA	2 cut(s)	904, 1210
Bsp143I	GATC	4 cut(s)	187, 262, 450, 697
Bsp19I	CCATGG	1 cut(s)	1292
BspACI	CCGC	2 cut(s)	454, 1111
BspANI	GGCC	3 cut(s)	683, 1297, 1336
BspCNI	CTCAG	3 cut(s)	1049, 1235, 1330
BspLI	GGNNCC	2 cut(s)	223, 1102
BspMAI	CTGCAG	1 cut(s)	719
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	3 cut(s)	257, 445, 692
BspT104I	TTCGAA	2 cut(s)	904, 1210
BspTI	CTTAAG	1 cut(s)	755
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	3 cut(s)	143, 1281, 1346
BsrFI	RCCGGY	1 cut(s)	1247
BsrI	ACTGG	4 cut(s)	331, 552, 626, 681
BssAI	RCCGGY	1 cut(s)	1247
BssECI	CCNNGG	4 cut(s)	399, 463, 997, 1292
BssMI	GATC	4 cut(s)	187, 262, 450, 697
BssT1I	CCWWGG	2 cut(s)	399, 1292
Bst2UI	CCWGG	2 cut(s)	464, 1386
Bst4CI	ACNGT	6 cut(s)	64, 154, 438, 569, 694, 839
BstAFI	CTTAAG	1 cut(s)	755
BstBI	TTCGAA	2 cut(s)	904, 1210
BstC8I	GCNNGC	5 cut(s)	685, 735, 919, 1217, 1353
BstDEI	CTNAG	4 cut(s)	547, 1036, 1222, 1338
BstDSI	CCRYGG	1 cut(s)	1292
BstF5I	GGATG	3 cut(s)	640, 751, 1304
BstKTI	GATC	4 cut(s)	190, 265, 453, 700
BstMAI	GTCTC	2 cut(s)	473, 1364
BstMBI	GATC	4 cut(s)	187, 262, 450, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	464, 1386
BstNSI	RCATGY	1 cut(s)	1266
BstSCI	CCNGG	3 cut(s)	462, 997, 1384
BstSFI	CTRYAG	5 cut(s)	472, 715, 1012, 1077, 1252
BstV1I	GCAGC	7 cut(s)	416, 701, 736, 967, 979, 1193, 1298
BstX2I	RGATCY	2 cut(s)	187, 262
BstYI	RGATCY	2 cut(s)	187, 262
BsuRI	GGCC	3 cut(s)	683, 1297, 1336
BtgI	CCRYGG	1 cut(s)	1292
BtsCI	GGATG	3 cut(s)	640, 751, 1304
BtsI	GCAGTG	2 cut(s)	144, 991
BtsIMutI	CAGTG	4 cut(s)	144, 633, 690, 991
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	5 cut(s)	685, 735, 919, 1217, 1353
CaiI	CAGNNNCTG	3 cut(s)	266, 383, 887
Cfr10I	RCCGGY	1 cut(s)	1247
Cfr13I	GGNCC	4 cut(s)	221, 1001, 1101, 1334
Csp6I	GTAC	3 cut(s)	289, 570, 1456
CviAII	CATG	8 cut(s)	170, 367, 742, 818, 1105, 1126, 1263, 1293
CviQI	GTAC	3 cut(s)	289, 570, 1456
DdeI	CTNAG	4 cut(s)	547, 1036, 1222, 1338
DpnI	GATC	4 cut(s)	189, 264, 452, 699
DpnII	GATC	4 cut(s)	187, 262, 450, 697
DraI	TTTAAA	1 cut(s)	1378
DrdI	GACNNNNNNGTC	2 cut(s)	219, 726
DseDI	GACNNNNNNGTC	2 cut(s)	219, 726
Eco130I	CCWWGG	2 cut(s)	399, 1292
Eco147I	AGGCCT	1 cut(s)	683
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	3 cut(s)	221, 1001, 1101
Eco57I	CTGAAG	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	462, 1384
EcoT14I	CCWWGG	2 cut(s)	399, 1292
ErhI	CCWWGG	2 cut(s)	399, 1292
FaeI	CATG	8 cut(s)	173, 370, 745, 821, 1108, 1129, 1266, 1296
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	8 cut(s)	169, 366, 741, 817, 1104, 1125, 1262, 1292
FauNDI	CATATG	1 cut(s)	1186
FblI	GTMKAC	1 cut(s)	1204
Fnu4HI	GCNGC	7 cut(s)	405, 715, 750, 956, 993, 1182, 1287
FokI	GGATG	3 cut(s)	647, 758, 1291
Fsp4HI	GCNGC	7 cut(s)	405, 715, 750, 956, 993, 1182, 1287
FspBI	CTAG	4 cut(s)	41, 191, 207, 306
GluI	GCNGC	7 cut(s)	405, 715, 750, 956, 993, 1182, 1287
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	683, 1297, 1336
HapII	CCGG	2 cut(s)	999, 1248
Hin1II	CATG	8 cut(s)	173, 370, 745, 821, 1108, 1129, 1266, 1296
HincII	GTYRAC	3 cut(s)	928, 1156, 1193
HindII	GTYRAC	3 cut(s)	928, 1156, 1193
HindIII	AAGCTT	1 cut(s)	1213
HinfI	GANTC	1 cut(s)	213
HpaI	GTTAAC	1 cut(s)	928
HpaII	CCGG	2 cut(s)	999, 1248
HphI	GGTGA	2 cut(s)	228, 818
Hpy166II	GTNNAC	6 cut(s)	212, 604, 928, 1156, 1193, 1205
Hpy188I	TCNGA	5 cut(s)	385, 487, 1225, 1369, 1416
Hpy188III	TCNNGA	5 cut(s)	131, 185, 266, 765, 1038
Hpy8I	GTNNAC	6 cut(s)	212, 604, 928, 1156, 1193, 1205
HpyAV	CCTTC	3 cut(s)	625, 1014, 1308
HpyCH4III	ACNGT	6 cut(s)	64, 154, 438, 569, 694, 839
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	4 cut(s)	547, 1036, 1222, 1338
Hsp92II	CATG	8 cut(s)	173, 370, 745, 821, 1108, 1129, 1266, 1296
KspAI	GTTAAC	1 cut(s)	928
Kzo9I	GATC	4 cut(s)	187, 262, 450, 697
LmnI	GCTCC	1 cut(s)	593
Lsp1109I	GCAGC	7 cut(s)	416, 701, 736, 967, 979, 1193, 1298
LweI	GCATC	4 cut(s)	389, 465, 736, 874
MaeI	CTAG	4 cut(s)	41, 191, 207, 306
MaeIII	GTNAC	1 cut(s)	1274
MalI	GATC	4 cut(s)	189, 264, 452, 699
MboI	GATC	4 cut(s)	187, 262, 450, 697
MboII	GAAGA	2 cut(s)	13, 451
MflI	RGATCY	2 cut(s)	187, 262
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	326
MnlI	CCTC	8 cut(s)	29, 187, 673, 711, 1112, 1231, 1318, 1327
MseI	TTAA	9 cut(s)	323, 705, 756, 927, 951, 972, 1022, 1058, 1377
MspCI	CTTAAG	1 cut(s)	755
MspI	CCGG	2 cut(s)	999, 1248
MspR9I	CCNGG	3 cut(s)	464, 999, 1386
Mva1269I	GAATGC	1 cut(s)	1173
MvaI	CCWGG	2 cut(s)	464, 1386
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	999
NcoI	CCATGG	1 cut(s)	1292
NdeI	CATATG	1 cut(s)	1186
NdeII	GATC	4 cut(s)	187, 262, 450, 697
NlaIII	CATG	8 cut(s)	173, 370, 745, 821, 1108, 1129, 1266, 1296
NlaIV	GGNNCC	2 cut(s)	223, 1102
NmuCI	GTSAC	1 cut(s)	1274
NspI	RCATGY	1 cut(s)	1266
NspV	TTCGAA	2 cut(s)	904, 1210
PaqCI	CACCTGC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	683
PciI	ACATGT	1 cut(s)	1262
PctI	GAATGC	1 cut(s)	1173
PkrI	GCNGC	7 cut(s)	406, 716, 751, 957, 994, 1183, 1288
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PscI	ACATGT	1 cut(s)	1262
Psp6I	CCWGG	2 cut(s)	462, 1384
PspGI	CCWGG	2 cut(s)	462, 1384
PspN4I	GGNNCC	2 cut(s)	223, 1102
PspPI	GGNCC	4 cut(s)	221, 1001, 1101, 1334
PstI	CTGCAG	1 cut(s)	719
PstNI	CAGNNNCTG	3 cut(s)	266, 383, 887
PsuI	RGATCY	2 cut(s)	187, 262
RsaI	GTAC	3 cut(s)	290, 571, 1457
RsaNI	GTAC	3 cut(s)	289, 570, 1456
SaqAI	TTAA	9 cut(s)	323, 705, 756, 927, 951, 972, 1022, 1058, 1377
SatI	GCNGC	7 cut(s)	405, 715, 750, 956, 993, 1182, 1287
Sau3AI	GATC	4 cut(s)	187, 262, 450, 697
Sau96I	GGNCC	4 cut(s)	221, 1001, 1101, 1334
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	3 cut(s)	464, 999, 1386
SfaNI	GCATC	4 cut(s)	389, 465, 736, 874
SfcI	CTRYAG	5 cut(s)	472, 715, 1012, 1077, 1252
SfuI	TTCGAA	2 cut(s)	904, 1210
SinI	GGWCC	3 cut(s)	221, 1001, 1101
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SpeI	ACTAGT	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	683
SsiI	CCGC	2 cut(s)	454, 1111
SspI	AATATT	2 cut(s)	909, 1135
SspMI	CTAG	4 cut(s)	41, 191, 207, 306
StuI	AGGCCT	1 cut(s)	683
StyD4I	CCNGG	3 cut(s)	462, 997, 1384
StyI	CCWWGG	2 cut(s)	399, 1292
TaaI	ACNGT	6 cut(s)	64, 154, 438, 569, 694, 839
TaqI	TCGA	3 cut(s)	359, 904, 1210
TatI	WGTACW	2 cut(s)	569, 1455
Tru1I	TTAA	9 cut(s)	323, 705, 756, 927, 951, 972, 1022, 1058, 1377
Tru9I	TTAA	9 cut(s)	323, 705, 756, 927, 951, 972, 1022, 1058, 1377
TscAI	CASTG	4 cut(s)	144, 633, 697, 991
TseFI	GTSAC	1 cut(s)	1274
TseI	GCWGC	7 cut(s)	404, 714, 749, 955, 992, 1181, 1286
Tsp45I	GTSAC	1 cut(s)	1274
TspDTI	ATGAA	2 cut(s)	1419, 1432
TspGWI	ACGGA	1 cut(s)	977
TspRI	CASTG	4 cut(s)	144, 633, 697, 991
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	3 cut(s)	221, 1001, 1101
XapI	RAATTY	6 cut(s)	343, 505, 595, 661, 796, 1409
XceI	RCATGY	1 cut(s)	1266
XmiI	GTMKAC	1 cut(s)	1204
XspI	CTAG	4 cut(s)	41, 191, 207, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.