Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010646

Physical Location & Seq

Genomic Coordinates Forward (+)

13149414 .. 13152542

Gene Structure 3129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATGAGAGGTGCTGCTCCCACCGGAGTAGTATCGGTCATGGTTTTAATGATACTTGTGTTGTTAAAACAAATAGAGAGTGCTAGTGCGAATGGTTCATCATTAGGGCTACCACCTAGAAAGTTTTGTAATATTTATCAAGGAAGTTGGGTCTATGACAAATCTTACCCTCTCTATGATTCCAAGAATTGCCCTTTCATCGAGAGACAGTTTAACTGCAAGTCCAATGGTCGCCCTGACAGCGAGTACCTCAAGTATCGATGGCAACCTTCCGGTTGCAATCTCCCCAGATTCAACGGCTTAGATTTTCTGGGAAGGATAATGAAAGGGAAGAAACTGATGTTCGTAGGAGATTCACTGAGTCTAAACCAATGGCAATCTCTCACGTGTTTGCTCCACAACGCCGCACCAAAAGCCAATTCCACATCCACACGTTCCCCTTCTGGCCTCTCCGTCTTCTCATTCCCCGCTTACAATTCTTCGATTATGTTTTCAAGAAACGCGTTTCTTGTGGATATAGTCGGAGCCCCACCGAAGCGAGTGATGAAGCTTGACTCAATCTCGAGTGGTTCGTTGTGGAAAACCGCAGACGTTTTGGTCTTCAACTCTTGGCATTGGTGGCTTCACACAGACCGAAAACAACCATGGGACGCAATTATGTCCGGGAATGTAACGGTTAAAGACATGGACCGGTTAGTGGCATATGAGAAAGCAATGATGACTTGGGCTAAGTGGATTGATCAAAATATTGATCCTTCCAAAACCAAAGTCTTCTTCCAAGGTATTTCTCCGGACCATGGCCGGGCAAGGGAATGGTCGAAACAAGGTGGCAAAGGCAGTTGCATAGGAGAAACAAAGCCGATTATGGGATCGAGTTACCTGGCTGGGCCGCACGCAGCCGAGATGGTGGTGGCGAAAGTGATAAAGACGATGAAGAATCAGGCGCGGTTAATGGATGTGACATTGATGTCTCAGCTAAGGAAAGATGGACATCCTTCAGTATACGGTTTTGGCGGTCACAGAATGGCGGATTGTAGCCATTGGTGTCTCTCTGGAGTCCCGGATAGCTGGAACCAGCTCTTGTATTCTGAGCTGTTTCATTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

368

Amino Acids

41.25

Weight (kDa)

9.5

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	43 - 94	4.4e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	95 - 363	8.4e-90	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30900 AT2G30900
fragaria_vesca	FvH4_6g27910
malus_domestica	MD09G1233300.v1.1 MD17G1229600.v1.1 MD17G1229700.v1.1
prunus_persica	Prupe.3G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131461 RchiOBHm_Chr2g0131471
rosa_laevigata	RLG00000019184
rosa_multiflora	Rmu_sc0002869.1_g000010
rosa_roxburghii	Rroxscaffold_2G00112850
rosa_rugosa	Rorug02G0296800 Rorug02G0296900 Rorug02G0297000
rosa_samantha	Rh2AG350500 Rh2BG357000 Rh2CG336100 Rh2DG374900
rosa_wichuraiana	Rw2G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	596, 967
AccI	GTMKAC	1 cut(s)	1002
AccII	CGCG	2 cut(s)	503, 946
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	7 cut(s)	405, 468, 585, 890, 946, 1014, 1028
AclWI	GGATC	2 cut(s)	746, 877
AcoI	YGGCCR	1 cut(s)	799
AcuI	CTGAAG	1 cut(s)	981
AcvI	CACGTG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	5 cut(s)	697, 797, 802, 808, 866
AflIII	ACRYGT	3 cut(s)	386, 431, 501
AgeI	ACCGGT	1 cut(s)	690
AgsI	TTSAA	3 cut(s)	295, 495, 604
AjnI	CCWGG	1 cut(s)	879
AjuI	GAANNNNNNNTTGG	4 cut(s)	403, 435, 758, 790
AluBI	AGCT	5 cut(s)	550, 976, 1068, 1078, 1093
AluI	AGCT	5 cut(s)	550, 976, 1068, 1078, 1093
Alw26I	GTCTC	3 cut(s)	199, 975, 1052
AlwI	GGATC	2 cut(s)	746, 877
Ama87I	CYCGRG	1 cut(s)	562
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	3 cut(s)	445, 799, 887
ApeKI	GCWGC	2 cut(s)	14, 896
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AsiGI	ACCGGT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	946
AspS9I	GGNCC	3 cut(s)	688, 793, 887
AsuC2I	CCSGG	3 cut(s)	664, 803, 1061
AvaI	CYCGRG	1 cut(s)	562
AvaII	GGWCC	2 cut(s)	688, 793
BaeI	ACNNNNGTAYC	2 cut(s)	44, 77
BanII	GRGCYC	1 cut(s)	529
BbrPI	CACGTG	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	448, 592, 763
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	3 cut(s)	255, 898, 980
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	739
BcnI	CCSGG	3 cut(s)	664, 803, 1061
BcoDI	GTCTC	3 cut(s)	199, 975, 1052
BfaI	CTAG	2 cut(s)	84, 117
BisI	GCNGC	4 cut(s)	15, 405, 890, 897
BlsI	GCNGC	4 cut(s)	16, 406, 891, 898
Bme1390I	CCNGG	4 cut(s)	664, 803, 881, 1061
Bme18I	GGWCC	2 cut(s)	688, 793
BmeT110I	CYCGRG	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	688, 793, 887
BmiI	GGNNCC	2 cut(s)	526, 1073
BmrFI	CCNGG	4 cut(s)	664, 803, 881, 1061
BpiI	GAAGAC	3 cut(s)	448, 592, 763
BpmI	CTGGAG	1 cut(s)	1074
Bpu10I	CCTNAGC	1 cut(s)	977
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	664, 803, 1061
Bsa29I	ATCGAT	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	990
BsaJI	CCNNGG	3 cut(s)	644, 778, 796
BsaWI	WCCGGW	4 cut(s)	23, 272, 690, 790
Bsc4I	CCNNNNNNNGG	5 cut(s)	697, 797, 802, 808, 866
Bse118I	RCCGGY	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	720
Bse8I	GATNNNNATC	1 cut(s)	990
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	1 cut(s)	881
BseCI	ATCGAT	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	644, 778, 796
BseGI	GGATG	3 cut(s)	425, 961, 991
BseJI	GATNNNNATC	1 cut(s)	990
BseLI	CCNNNNNNNGG	5 cut(s)	697, 797, 802, 808, 866
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	3 cut(s)	350, 986, 1080
BseXI	GCAGC	1 cut(s)	908
BseYI	CCCAGC	1 cut(s)	884
Bsh1236I	CGCG	2 cut(s)	503, 946
BshFI	GGCC	3 cut(s)	447, 801, 889
BshTI	ACCGGT	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	259
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	7 cut(s)	24, 273, 663, 691, 791, 802, 1061
BslFI	GGGAC	2 cut(s)	662, 1043
BslI	CCNNNNNNNGG	5 cut(s)	697, 797, 802, 808, 866
BsmAI	GTCTC	3 cut(s)	199, 975, 1052
BsmFI	GGGAC	2 cut(s)	662, 1043
BsnI	GGCC	3 cut(s)	447, 801, 889
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	3 cut(s)	739, 751, 869
Bsp19I	CCATGG	2 cut(s)	644, 796
BspACI	CCGC	7 cut(s)	405, 468, 585, 890, 946, 1014, 1028
BspANI	GGCC	3 cut(s)	447, 801, 889
BspCNI	CTCAG	3 cut(s)	351, 985, 1081
BspDI	ATCGAT	1 cut(s)	259
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	2 cut(s)	503, 946
BspLI	GGNNCC	2 cut(s)	526, 1073
BspPI	GGATC	2 cut(s)	746, 877
BsrDI	GCAATG	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	690
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	3 cut(s)	644, 778, 796
BssMI	GATC	3 cut(s)	739, 751, 869
BssNAI	GTATAC	1 cut(s)	1003
BssT1I	CCWWGG	3 cut(s)	644, 778, 796
Bst1107I	GTATAC	1 cut(s)	1003
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	3 cut(s)	210, 676, 1007
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	894
BstDEI	CTNAG	6 cut(s)	301, 359, 729, 972, 977, 1089
BstDSI	CCRYGG	2 cut(s)	644, 796
BstF5I	GGATG	3 cut(s)	425, 961, 991
BstFNI	CGCG	2 cut(s)	503, 946
BstHHI	GCGC	1 cut(s)	946
BstKTI	GATC	3 cut(s)	742, 754, 872
BstMAI	GTCTC	3 cut(s)	199, 975, 1052
BstMBI	GATC	3 cut(s)	739, 751, 869
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 413, 619
BstNI	CCWGG	1 cut(s)	881
BstSCI	CCNGG	4 cut(s)	662, 801, 879, 1059
BstUI	CGCG	2 cut(s)	503, 946
BstV1I	GCAGC	1 cut(s)	908
BstV2I	GAAGAC	3 cut(s)	448, 592, 763
BstZ17I	GTATAC	1 cut(s)	1003
Bsu15I	ATCGAT	1 cut(s)	259
BsuRI	GGCC	3 cut(s)	447, 801, 889
BsuTUI	ATCGAT	1 cut(s)	259
BtgI	CCRYGG	2 cut(s)	644, 796
BtsCI	GGATG	3 cut(s)	425, 961, 991
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	894
CfoI	GCGC	1 cut(s)	946
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	3 cut(s)	688, 793, 887
ClaI	ATCGAT	1 cut(s)	259
CseI	GACGC	1 cut(s)	659
Csp6I	GTAC	1 cut(s)	247
CspAI	ACCGGT	1 cut(s)	690
CviAII	CATG	4 cut(s)	40, 645, 685, 797
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	6 cut(s)	301, 359, 729, 972, 977, 1089
DpnI	GATC	3 cut(s)	741, 753, 871
DpnII	GATC	3 cut(s)	739, 751, 869
DrdI	GACNNNNNNGTC	2 cut(s)	596, 967
DseDI	GACNNNNNNGTC	2 cut(s)	596, 967
EaeI	YGGCCR	1 cut(s)	799
EciI	GGCGGA	1 cut(s)	1043
Eco130I	CCWWGG	3 cut(s)	644, 778, 796
Eco24I	GRGCYC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	688, 793
Eco57I	CTGAAG	1 cut(s)	981
Eco72I	CACGTG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	562
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	3 cut(s)	644, 778, 796
EcoT38I	GRGCYC	1 cut(s)	529
ErhI	CCWWGG	3 cut(s)	644, 778, 796
FaeI	CATG	4 cut(s)	43, 648, 688, 800
FaqI	GGGAC	2 cut(s)	662, 1043
FatI	CATG	4 cut(s)	39, 644, 684, 796
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	703
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	1002
Fnu4HI	GCNGC	4 cut(s)	15, 405, 890, 897
FokI	GGATG	3 cut(s)	412, 968, 978
FriOI	GRGCYC	1 cut(s)	529
Fsp4HI	GCNGC	4 cut(s)	15, 405, 890, 897
FspBI	CTAG	2 cut(s)	84, 117
GlaI	GCGC	1 cut(s)	945
GluI	GCNGC	4 cut(s)	15, 405, 890, 897
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	1 cut(s)	1074
HaeIII	GGCC	3 cut(s)	447, 801, 889
HapII	CCGG	7 cut(s)	24, 273, 663, 691, 791, 802, 1061
HgaI	GACGC	1 cut(s)	659
HhaI	GCGC	1 cut(s)	946
Hin1II	CATG	4 cut(s)	43, 648, 688, 800
Hin6I	GCGC	1 cut(s)	944
HinP1I	GCGC	1 cut(s)	944
HindIII	AAGCTT	1 cut(s)	548
HinfI	GANTC	7 cut(s)	179, 291, 353, 361, 554, 937, 1056
HpaII	CCGG	7 cut(s)	24, 273, 663, 691, 791, 802, 1061
Hpy166II	GTNNAC	1 cut(s)	1003
Hpy188I	TCNGA	2 cut(s)	524, 1090
Hpy188III	TCNNGA	5 cut(s)	202, 495, 562, 791, 1053
Hpy8I	GTNNAC	1 cut(s)	1003
HpyAV	CCTTC	5 cut(s)	279, 309, 450, 765, 1005
HpyCH4III	ACNGT	3 cut(s)	210, 676, 1007
HpyCH4IV	ACGT	3 cut(s)	386, 433, 591
HpyCH4V	TGCA	3 cut(s)	219, 279, 843
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 413, 619
HpyF3I	CTNAG	6 cut(s)	301, 359, 729, 972, 977, 1089
HpySE526I	ACGT	3 cut(s)	386, 433, 591
Hsp92II	CATG	4 cut(s)	43, 648, 688, 800
HspAI	GCGC	1 cut(s)	944
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	3 cut(s)	739, 751, 869
LmnI	GCTCC	3 cut(s)	22, 399, 524
Lsp1109I	GCAGC	1 cut(s)	908
MaeI	CTAG	2 cut(s)	84, 117
MaeII	ACGT	3 cut(s)	386, 433, 591
MaeIII	GTNAC	4 cut(s)	670, 875, 958, 1016
MalI	GATC	3 cut(s)	741, 753, 871
MboI	GATC	3 cut(s)	739, 751, 869
MboII	GAAGA	7 cut(s)	343, 448, 471, 592, 763, 766, 946
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	4 cut(s)	187, 418, 475, 654
MluI	ACGCGT	1 cut(s)	501
MlyI	GAGTC	3 cut(s)	370, 548, 1065
MmeI	TCCRAC	1 cut(s)	502
MnlI	CCTC	3 cut(s)	180, 260, 458
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	6 cut(s)	47, 65, 213, 678, 950, 1105
MspI	CCGG	7 cut(s)	24, 273, 663, 691, 791, 802, 1061
MspR9I	CCNGG	4 cut(s)	664, 803, 881, 1061
MvaI	CCWGG	1 cut(s)	881
MvnI	CGCG	2 cut(s)	503, 946
MwoI	GCNNNNNNNGC	3 cut(s)	240, 413, 619
NciI	CCSGG	3 cut(s)	664, 803, 1061
NcoI	CCATGG	2 cut(s)	644, 796
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	739, 751, 869
NlaIII	CATG	4 cut(s)	43, 648, 688, 800
NlaIV	GGNNCC	2 cut(s)	526, 1073
NmeAIII	GCCGAG	1 cut(s)	925
NmuCI	GTSAC	2 cut(s)	958, 1016
PaeR7I	CTCGAG	1 cut(s)	562
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PfeI	GAWTC	4 cut(s)	179, 291, 353, 937
PfoI	TCCNGGA	2 cut(s)	662, 1059
PinAI	ACCGGT	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	16, 406, 891, 898
PleI	GAGTC	3 cut(s)	369, 548, 1064
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
PpsI	GAGTC	3 cut(s)	369, 548, 1064
Ppu21I	YACGTR	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	879
PspCI	CACGTG	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	1 cut(s)	879
PspN4I	GGNNCC	2 cut(s)	526, 1073
PspPI	GGNCC	3 cut(s)	688, 793, 887
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	6 cut(s)	47, 65, 213, 678, 950, 1105
SatI	GCNGC	4 cut(s)	15, 405, 890, 897
Sau3AI	GATC	3 cut(s)	739, 751, 869
Sau96I	GGNCC	3 cut(s)	688, 793, 887
SchI	GAGTC	3 cut(s)	370, 548, 1065
ScrFI	CCNGG	4 cut(s)	664, 803, 881, 1061
SduI	GDGCHC	1 cut(s)	529
Sfr274I	CTCGAG	1 cut(s)	562
SinI	GGWCC	2 cut(s)	688, 793
SlaI	CTCGAG	1 cut(s)	562
SmlI	CTYRAG	2 cut(s)	251, 562
SmoI	CTYRAG	2 cut(s)	251, 562
Sse9I	AATT	4 cut(s)	187, 418, 475, 654
SsiI	CCGC	7 cut(s)	405, 468, 585, 890, 946, 1014, 1028
SspI	AATATT	2 cut(s)	133, 748
SspMI	CTAG	2 cut(s)	84, 117
StyD4I	CCNGG	4 cut(s)	662, 801, 879, 1059
StyI	CCWWGG	3 cut(s)	644, 778, 796
TaaI	ACNGT	3 cut(s)	210, 676, 1007
TaiI	ACGT	3 cut(s)	389, 436, 594
TaqI	TCGA	6 cut(s)	201, 259, 482, 563, 818, 872
TaqII	GACCGA	2 cut(s)	25, 648
TasI	AATT	4 cut(s)	187, 418, 475, 654
TauI	GCSGC	2 cut(s)	407, 892
TfiI	GAWTC	4 cut(s)	179, 291, 353, 937
Tru1I	TTAA	6 cut(s)	47, 65, 213, 678, 950, 1105
Tru9I	TTAA	6 cut(s)	47, 65, 213, 678, 950, 1105
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	958, 1016
TseI	GCWGC	2 cut(s)	14, 896
Tsp45I	GTSAC	2 cut(s)	958, 1016
TspDTI	ATGAA	6 cut(s)	87, 187, 338, 560, 947, 1088
TspGWI	ACGGA	1 cut(s)	442
TspRI	CASTG	1 cut(s)	363
VpaK11BI	GGWCC	2 cut(s)	688, 793
XhoI	CTCGAG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	1002
XspI	CTAG	2 cut(s)	84, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.