Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010646

Physical Location & Seq

Genomic Coordinates Reverse (-)

27774411 .. 27776549

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1229700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGACTTCCATTTCCGGGAAATGGGTTTATGATAGGTCTTATCCTCTCTACACTTCCACTGACTGTCCATTCATAGAGAAGGAGTTTAATTGCCAAAACCATGGACGACCGGATAAGGAGTATCAGAAATACAGATGGCAGCCAACTTCGTGCCAGATACCGAGGATCACTGGAAGAAGTTTTCTTCAAAGATTGAGAGGGAAGCGCATCCTGTTTGTAGGAGACTCACTGAGCTTGAATCAATGGCAGTCTCTCACATGCATGATTCACAAATCAGCACCAGAAGCTAAGTACGATCTAGTCAAGATTGGAGGCCTATCTGTACTCAAATTTCCAGCATACGACATCTCGATCATGCTCTCGCGCAATGCCTTTCTAGTAGATATCGTCCTTGAGGGAAGCCGGCGTGTTCTAGTGCTCGATTCGATTCAAAGTGGAAATTTTTGGAGAACCTTTGACGTCTTGGTCTTTGATACATGGCACTGGTGGCTTCATACTGGAAGGAAACAACCGTGGGATTTTGTCCGATACGAGGGACGGACACACAAAGACATGGATCGCATGGTGGCTTACGAGACAGCTCTGAGGACATGGGCAAGATGGGTAGATTCCAGTGTTGATTCTACTAAAACTCAGGTCTTCTTCCAGGGTGTTTCTCCAGATCACATGAATCCAAGAGAATGGGGTGATGCAAAGTCGGAGAACTGCCGAGGACAAACAGAACCAGTGTTCGGGTCACATTATCCAGGAGGTTCACATCCAGCAGAAATTGTCCTAAAAAAGGTTTTGCGCATAGTGTTTAAGCCAGTTCATTTGCTCGACATAACAACACTTTCACAACTAAGAAAAGACGGTCACCCTTCAGTCTATGGATACGGCGGCCGCCGCGGCACAGACTGCACTCACTGGTGTCTTCCTGGTGTTCCAGATTCTTGGAATCAAATTCTAATTGCAGCACTCTTCCAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

325

Amino Acids

37.51

Weight (kDa)

9.09

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	5 - 53	1e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	54 - 319	5.9e-87	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30900 AT2G30900
fragaria_vesca	FvH4_6g27910
malus_domestica	MD09G1233300.v1.1 MD17G1229600.v1.1 MD17G1229700.v1.1
prunus_persica	Prupe.3G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131461 RchiOBHm_Chr2g0131471
rosa_laevigata	RLG00000019184
rosa_multiflora	Rmu_sc0002869.1_g000010
rosa_roxburghii	Rroxscaffold_2G00112850
rosa_rugosa	Rorug02G0296800 Rorug02G0296900 Rorug02G0297000
rosa_samantha	Rh2AG350500 Rh2BG357000 Rh2CG336100 Rh2DG374900
rosa_wichuraiana	Rw2G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	467
AatII	GACGTC	1 cut(s)	465
Acc16I	TGCGCA	1 cut(s)	794
AccII	CGCG	2 cut(s)	367, 891
AciI	CCGC	4 cut(s)	882, 886, 889, 891
AclWI	GGATC	2 cut(s)	176, 567
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	3 cut(s)	332, 442, 945
AcuI	CTGAAG	1 cut(s)	849
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	2 cut(s)	296, 327
AfiI	CCNNNNNNNGG	5 cut(s)	18, 24, 535, 734, 784
AgsI	TTSAA	3 cut(s)	191, 241, 434
AjnI	CCWGG	3 cut(s)	648, 748, 919
AluBI	AGCT	4 cut(s)	237, 290, 584, 972
AluI	AGCT	4 cut(s)	237, 290, 584, 972
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	3 cut(s)	219, 258, 572
AlwI	GGATC	2 cut(s)	176, 567
AoxI	GGCC	2 cut(s)	316, 883
ApeKI	GCWGC	2 cut(s)	142, 956
ApoI	RAATTY	3 cut(s)	332, 442, 945
AspLEI	GCGC	3 cut(s)	210, 369, 795
AsuC2I	CCSGG	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	701, 851
BbsI	GAAGAC	2 cut(s)	634, 908
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	154, 968
BccI	CCATC	2 cut(s)	132, 597
BceAI	ACGGC	1 cut(s)	895
BciT130I	CCWGG	3 cut(s)	650, 750, 921
BciVI	GTATCC	1 cut(s)	869
BcnI	CCSGG	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	219, 258, 572
BfaI	CTAG	3 cut(s)	302, 380, 416
BfuI	GTATCC	1 cut(s)	869
BglI	GCCNNNNNGGC	1 cut(s)	891
BisI	GCNGC	6 cut(s)	143, 883, 886, 889, 892, 957
BlsI	GCNGC	6 cut(s)	144, 884, 887, 890, 893, 958
Bme1390I	CCNGG	4 cut(s)	19, 650, 750, 921
BmrFI	CCNGG	4 cut(s)	19, 650, 750, 921
BmsI	GCATC	2 cut(s)	219, 682
BpiI	GAAGAC	2 cut(s)	634, 908
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	19
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	6 cut(s)	103, 164, 515, 649, 712, 889
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 24, 535, 734, 784
Bse118I	RCCGGY	1 cut(s)	405
Bse1I	ACTGG	7 cut(s)	178, 491, 505, 615, 728, 809, 914
Bse3DI	GCAATG	1 cut(s)	376
BseBI	CCWGG	3 cut(s)	650, 750, 921
BseDI	CCNNGG	6 cut(s)	103, 164, 515, 649, 712, 889
BseGI	GGATG	2 cut(s)	210, 760
BseLI	CCNNNNNNNGG	5 cut(s)	18, 24, 535, 734, 784
BseMI	GCAATG	1 cut(s)	376
BseMII	CTCAG	3 cut(s)	224, 578, 650
BseNI	ACTGG	7 cut(s)	178, 491, 505, 615, 728, 809, 914
BseX3I	CGGCCG	1 cut(s)	883
BseXI	GCAGC	2 cut(s)	154, 968
BsgI	GTGCAG	1 cut(s)	886
Bsh1236I	CGCG	2 cut(s)	367, 891
Bsh1285I	CGRYCG	2 cut(s)	113, 886
BshFI	GGCC	2 cut(s)	318, 885
BsiEI	CGRYCG	2 cut(s)	113, 886
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	3 cut(s)	18, 113, 406
BslFI	GGGAC	1 cut(s)	552
BslI	CCNNNNNNNGG	5 cut(s)	18, 24, 535, 734, 784
BsmAI	GTCTC	3 cut(s)	219, 258, 572
BsmFI	GGGAC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	318, 885
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	5 cut(s)	168, 298, 354, 559, 664
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	4 cut(s)	882, 886, 889, 891
BspANI	GGCC	2 cut(s)	318, 885
BspCNI	CTCAG	3 cut(s)	225, 579, 649
BspFNI	CGCG	2 cut(s)	367, 891
BspPI	GGATC	2 cut(s)	176, 567
BsrDI	GCAATG	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	405
BsrI	ACTGG	7 cut(s)	178, 491, 505, 615, 728, 809, 914
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	6 cut(s)	103, 164, 515, 649, 712, 889
BssMI	GATC	5 cut(s)	168, 298, 354, 559, 664
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	3 cut(s)	650, 750, 921
Bst4CI	ACNGT	3 cut(s)	68, 516, 857
Bst6I	CTCTTC	1 cut(s)	968
BstACI	GRCGYC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	5 cut(s)	233, 291, 587, 636, 845
BstDSI	CCRYGG	3 cut(s)	103, 515, 889
BstEII	GGTNACC	1 cut(s)	857
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	2 cut(s)	210, 760
BstFNI	CGCG	2 cut(s)	367, 891
BstHHI	GCGC	3 cut(s)	210, 369, 795
BstKTI	GATC	5 cut(s)	171, 301, 357, 562, 667
BstMAI	GTCTC	3 cut(s)	219, 258, 572
BstMBI	GATC	5 cut(s)	168, 298, 354, 559, 664
BstMCI	CGRYCG	2 cut(s)	113, 886
BstMWI	GCNNNNNNNGC	5 cut(s)	287, 490, 888, 891, 900
BstNI	CCWGG	3 cut(s)	650, 750, 921
BstNSI	RCATGY	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	857
BstSCI	CCNGG	4 cut(s)	17, 648, 748, 919
BstUI	CGCG	2 cut(s)	367, 891
BstV1I	GCAGC	2 cut(s)	154, 968
BstV2I	GAAGAC	2 cut(s)	634, 908
BstXI	CCANNNNNNTGG	3 cut(s)	104, 684, 936
BstZI	CGGCCG	1 cut(s)	883
BsuI	GTATCC	1 cut(s)	869
BsuRI	GGCC	2 cut(s)	318, 885
BtgI	CCRYGG	3 cut(s)	103, 515, 889
BtsCI	GGATG	2 cut(s)	210, 760
BtsIMutI	CAGTG	7 cut(s)	60, 171, 230, 484, 622, 735, 907
Cac8I	GCNNGC	1 cut(s)	407
CciNI	GCGGCCGC	1 cut(s)	883
CfoI	GCGC	3 cut(s)	210, 369, 795
Cfr10I	RCCGGY	1 cut(s)	405
Cfr42I	CCGCGG	1 cut(s)	892
Csp6I	GTAC	2 cut(s)	295, 326
CviAII	CATG	9 cut(s)	104, 261, 265, 358, 480, 556, 565, 594, 670
CviQI	GTAC	2 cut(s)	295, 326
DdeI	CTNAG	5 cut(s)	233, 291, 587, 636, 845
DpnI	GATC	5 cut(s)	170, 300, 356, 561, 666
DpnII	GATC	5 cut(s)	168, 298, 354, 559, 664
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	883
EagI	CGGCCG	1 cut(s)	883
Eam1104I	CTCTTC	1 cut(s)	968
EarI	CTCTTC	1 cut(s)	968
EclXI	CGGCCG	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	388
Eco52I	CGGCCG	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	857
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoO65I	GGTNACC	1 cut(s)	857
EcoRII	CCWGG	3 cut(s)	648, 748, 919
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	9 cut(s)	107, 264, 268, 361, 483, 559, 568, 597, 673
FaqI	GGGAC	1 cut(s)	552
FatI	CATG	9 cut(s)	103, 260, 264, 357, 479, 555, 564, 593, 669
Fnu4HI	GCNGC	6 cut(s)	143, 883, 886, 889, 892, 957
FokI	GGATG	2 cut(s)	197, 747
Fsp4HI	GCNGC	6 cut(s)	143, 883, 886, 889, 892, 957
FspBI	CTAG	3 cut(s)	302, 380, 416
FspI	TGCGCA	1 cut(s)	794
GlaI	GCGC	3 cut(s)	209, 368, 794
GluI	GCNGC	6 cut(s)	143, 883, 886, 889, 892, 957
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	318, 885
HapII	CCGG	3 cut(s)	18, 113, 406
HhaI	GCGC	3 cut(s)	210, 369, 795
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	9 cut(s)	107, 264, 268, 361, 483, 559, 568, 597, 673
Hin6I	GCGC	3 cut(s)	208, 367, 793
HinP1I	GCGC	3 cut(s)	208, 367, 793
HpaII	CCGG	3 cut(s)	18, 113, 406
HphI	GGTGA	2 cut(s)	701, 851
Hpy166II	GTNNAC	1 cut(s)	758
Hpy188I	TCNGA	4 cut(s)	129, 530, 588, 703
Hpy188III	TCNNGA	4 cut(s)	307, 352, 662, 929
Hpy8I	GTNNAC	1 cut(s)	758
HpyAV	CCTTC	3 cut(s)	76, 498, 873
HpyCH4III	ACNGT	3 cut(s)	68, 516, 857
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	264, 695, 903, 956
HpyF10VI	GCNNNNNNNGC	5 cut(s)	287, 490, 888, 891, 900
HpyF3I	CTNAG	5 cut(s)	233, 291, 587, 636, 845
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	9 cut(s)	107, 264, 268, 361, 483, 559, 568, 597, 673
HspAI	GCGC	3 cut(s)	208, 367, 793
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
KspI	CCGCGG	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	168, 298, 354, 559, 664
Lsp1109I	GCAGC	2 cut(s)	154, 968
LweI	GCATC	2 cut(s)	219, 682
MaeI	CTAG	3 cut(s)	302, 380, 416
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	738, 857
MalI	GATC	5 cut(s)	170, 300, 356, 561, 666
MboI	GATC	5 cut(s)	168, 298, 354, 559, 664
MboII	GAAGA	6 cut(s)	179, 189, 634, 637, 908, 955
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	6 cut(s)	91, 332, 442, 771, 945, 951
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	681
MnlI	CCTC	9 cut(s)	57, 159, 194, 308, 391, 529, 582, 707, 746
Mph1103I	ATGCAT	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	2 cut(s)	90, 804
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	891
MspI	CCGG	3 cut(s)	18, 113, 406
MspR9I	CCNGG	4 cut(s)	19, 650, 750, 921
MvaI	CCWGG	3 cut(s)	650, 750, 921
MvnI	CGCG	2 cut(s)	367, 891
MwoI	GCNNNNNNNGC	5 cut(s)	287, 490, 888, 891, 900
NaeI	GCCGGC	1 cut(s)	407
NciI	CCSGG	1 cut(s)	19
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	5 cut(s)	168, 298, 354, 559, 664
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	9 cut(s)	107, 264, 268, 361, 483, 559, 568, 597, 673
NmeAIII	GCCGAG	1 cut(s)	737
NmuCI	GTSAC	2 cut(s)	738, 857
NotI	GCGGCCGC	1 cut(s)	883
NsbI	TGCGCA	1 cut(s)	794
NsiI	ATGCAT	1 cut(s)	266
NspI	RCATGY	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	407
PfeI	GAWTC	9 cut(s)	241, 268, 425, 430, 611, 623, 673, 932, 940
PfoI	TCCNGGA	2 cut(s)	17, 748
PkrI	GCNGC	6 cut(s)	144, 884, 887, 890, 893, 958
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp6I	CCWGG	3 cut(s)	648, 748, 919
PspEI	GGTNACC	1 cut(s)	857
PspGI	CCWGG	3 cut(s)	648, 748, 919
RsaI	GTAC	2 cut(s)	296, 327
RsaNI	GTAC	2 cut(s)	295, 326
RseI	CAYNNNNRTG	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	892
SaqAI	TTAA	2 cut(s)	90, 804
SatI	GCNGC	6 cut(s)	143, 883, 886, 889, 892, 957
Sau3AI	GATC	5 cut(s)	168, 298, 354, 559, 664
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	4 cut(s)	19, 650, 750, 921
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	2 cut(s)	219, 682
Sfr303I	CCGCGG	1 cut(s)	892
SgrBI	CCGCGG	1 cut(s)	892
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	6 cut(s)	91, 332, 442, 771, 945, 951
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	4 cut(s)	882, 886, 889, 891
SspMI	CTAG	3 cut(s)	302, 380, 416
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	17, 648, 748, 919
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	68, 516, 857
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	4 cut(s)	353, 423, 428, 822
TasI	AATT	6 cut(s)	91, 332, 442, 771, 945, 951
TatI	WGTACW	1 cut(s)	325
TauI	GCSGC	4 cut(s)	885, 888, 891, 894
TfiI	GAWTC	9 cut(s)	241, 268, 425, 430, 611, 623, 673, 932, 940
Tru1I	TTAA	2 cut(s)	90, 804
Tru9I	TTAA	2 cut(s)	90, 804
TscAI	CASTG	7 cut(s)	67, 178, 237, 491, 622, 735, 914
TseFI	GTSAC	2 cut(s)	738, 857
TseI	GCWGC	2 cut(s)	142, 956
Tsp45I	GTSAC	2 cut(s)	738, 857
TspDTI	ATGAA	4 cut(s)	64, 485, 686, 803
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	7 cut(s)	67, 178, 237, 491, 622, 735, 914
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	3 cut(s)	332, 442, 945
XceI	RCATGY	1 cut(s)	264
XspI	CTAG	3 cut(s)	302, 380, 416
ZraI	GACGTC	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.