Rh2CG336100

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0010646
Physical Location & Seq
Forward (+)
44382032 .. 44386962
4931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG336100.1

Sequence Viewer

Length: 744 bp
ATGAATCAATGGCAGTCCCTCACATGCATGCTTTACAAATCAGTGCAAGCCAAATACACCATAAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGCATATGATGTTTCGATCATGCTGTCCCGAAATGCATTTCTAGTAGATACAGTGCATATGAGAAATGGGAATGTTCTGATGCTGGACTCAATTGAGAATGGAAGTTACTGGAGAACCTTTGATGTTATCATCTTCAATACATGGCATTGGTGGCTTCATTCTGGAAAAAAACAACCGTGGGCTTTTGTTCGTTATGGACTGAATAATGCCCACAAAGACATGAATCGCATGGTGGCGTATGAGAAAGCTCTAAATACATGGAAGAGATGGGTGGAGTCAAGTGTGGACACTGATAAAACAAAGATCTTCTTCCAGGGTGTCTCTCCCGATCATGTGAATCCAAGAGAATGGGGTGATGATGCAAACTCAAAGAGTTGTTTGGGAGAAACTGAACCAGTGAAGGGGACACAATATCCAGGAGGTTCACACCCAGGAGAAGTTGTTTTAGAAAGGGTATTGAGAAAAATGTCAAAGCCAGTTCATTTGCTAAACATCACCAGACTTTCACAACTAAGAAAAGACAGTCACCCTTCAGCCTATGGCTTCAGCGGCCACCGTGGCATGGATTGTACCCACTGGTGTGTTCCCGGTGTTCCAGATACTTGGAACCAACTTCTATTTGCAGCACTCTTCCAGGGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

247

Amino Acids

28.36

Weight (kDa)

9.14

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 2 - 241 2.8e-73 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 648
AcoI YGGCCR 1 cut(s) 649
AcuI CTGAAG 2 cut(s) 615, 628
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 3 cut(s) 66, 500, 661
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 4 cut(s) 411, 514, 529, 732
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 2 cut(s) 93, 347
AluI AGCT 2 cut(s) 93, 347
Alw26I GTCTC 1 cut(s) 424
AoxI GGCC 2 cut(s) 76, 649
ApeKI GCWGC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 3 cut(s) 464, 586, 617
BanII GRGCYC 1 cut(s) 740
BbvI GCAGC 1 cut(s) 734
BccI CCATC 1 cut(s) 360
BciT130I CCWGG 4 cut(s) 413, 516, 531, 734
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 1 cut(s) 424
BfaI CTAG 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 657
BglII AGATCT 1 cut(s) 402
BisI GCNGC 2 cut(s) 649, 723
BlsI GCNGC 2 cut(s) 650, 724
Bme1390I CCNGG 5 cut(s) 413, 516, 531, 687, 734
BmiI GGNNCC 1 cut(s) 707
BmrFI CCNGG 5 cut(s) 413, 516, 531, 687, 734
BmsI GCATC 2 cut(s) 168, 448
BpmI CTGGAG 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 687
BsaJI CCNNGG 5 cut(s) 275, 412, 529, 655, 733
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 500, 661
Bse1I ACTGG 4 cut(s) 212, 494, 575, 680
BseBI CCWGG 4 cut(s) 413, 516, 531, 734
BseDI CCNNGG 5 cut(s) 275, 412, 529, 655, 733
BseLI CCNNNNNNNGG 3 cut(s) 66, 500, 661
BseNI ACTGG 4 cut(s) 212, 494, 575, 680
BseXI GCAGC 1 cut(s) 734
BshFI GGCC 2 cut(s) 78, 651
BsiSI CCGG 1 cut(s) 687
BslFI GGGAC 2 cut(s) 109, 517
BslI CCNNNNNNNGG 3 cut(s) 66, 500, 661
BsmAI GTCTC 1 cut(s) 424
BsmFI GGGAC 2 cut(s) 109, 517
BsnI GGCC 2 cut(s) 78, 651
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 3 cut(s) 114, 402, 427
BspACI CCGC 1 cut(s) 648
BspANI GGCC 2 cut(s) 78, 651
BspHI TCATGA 1 cut(s) 740
BspLI GGNNCC 1 cut(s) 707
BsrI ACTGG 4 cut(s) 212, 494, 575, 680
BssECI CCNNGG 5 cut(s) 275, 412, 529, 655, 733
BssMI GATC 3 cut(s) 114, 402, 427
Bst2UI CCWGG 4 cut(s) 413, 516, 531, 734
Bst4CI ACNGT 4 cut(s) 151, 276, 623, 656
Bst6I CTCTTC 2 cut(s) 356, 734
BstC8I GCNNGC 2 cut(s) 29, 48
BstDEI CTNAG 1 cut(s) 611
BstDSI CCRYGG 2 cut(s) 275, 655
BstKTI GATC 3 cut(s) 117, 405, 430
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 114, 402, 427
BstMWI GCNNNNNNNGC 3 cut(s) 250, 648, 657
BstNI CCWGG 4 cut(s) 413, 516, 531, 734
BstNSI RCATGY 2 cut(s) 27, 31
BstSCI CCNGG 5 cut(s) 411, 514, 529, 685, 732
BstV1I GCAGC 1 cut(s) 734
BstX2I RGATCY 1 cut(s) 402
BstXI CCANNNNNNTGG 2 cut(s) 447, 702
BstYI RGATCY 1 cut(s) 402
BsuRI GGCC 2 cut(s) 78, 651
BtgI CCRYGG 2 cut(s) 275, 655
BtsIMutI CAGTG 5 cut(s) 48, 156, 387, 501, 673
Cac8I GCNNGC 2 cut(s) 29, 48
CciI TCATGA 1 cut(s) 740
Csp6I GTAC 1 cut(s) 669
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 1 cut(s) 611
DpnI GATC 3 cut(s) 116, 404, 429
DpnII GATC 3 cut(s) 114, 402, 427
EaeI YGGCCR 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 356, 734
EarI CTCTTC 2 cut(s) 356, 734
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 615, 628
EcoRII CCWGG 4 cut(s) 411, 514, 529, 732
EcoT22I ATGCAT 2 cut(s) 29, 136
EcoT38I GRGCYC 1 cut(s) 740
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FaqI GGGAC 2 cut(s) 109, 517
FauNDI CATATG 2 cut(s) 103, 156
Fnu4HI GCNGC 2 cut(s) 649, 723
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 2 cut(s) 649, 723
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 649, 723
GsuI CTGGAG 1 cut(s) 229
HaeIII GGCC 2 cut(s) 78, 651
HapII CCGG 1 cut(s) 687
HinfI GANTC 5 cut(s) 4, 185, 322, 374, 436
HpaII CCGG 1 cut(s) 687
HphI GGTGA 3 cut(s) 464, 586, 617
Hpy166II GTNNAC 2 cut(s) 385, 524
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 5 cut(s) 126, 261, 425, 695, 741
Hpy8I GTNNAC 2 cut(s) 385, 524
HpyAV CCTTC 2 cut(s) 493, 639
HpyCH4III ACNGT 4 cut(s) 151, 276, 623, 656
HpyCH4V TGCA 6 cut(s) 27, 46, 134, 154, 461, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 648, 657
HpyF3I CTNAG 1 cut(s) 611
Kzo9I GATC 3 cut(s) 114, 402, 427
Lsp1109I GCAGC 1 cut(s) 734
LweI GCATC 2 cut(s) 168, 448
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 203, 623
MalI GATC 3 cut(s) 116, 404, 429
MboI GATC 3 cut(s) 114, 402, 427
MboII GAAGA 5 cut(s) 223, 373, 397, 400, 721
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 1 cut(s) 189
MlyI GAGTC 2 cut(s) 179, 383
MnlI CCTC 4 cut(s) 29, 68, 89, 512
Mph1103I ATGCAT 2 cut(s) 29, 136
MslI CAYNNNNRTG 2 cut(s) 26, 678
MspA1I CMGCKG 1 cut(s) 648
MspI CCGG 1 cut(s) 687
MspR9I CCNGG 5 cut(s) 413, 516, 531, 687, 734
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 4 cut(s) 413, 516, 531, 734
MwoI GCNNNNNNNGC 3 cut(s) 250, 648, 657
NciI CCSGG 1 cut(s) 687
NdeI CATATG 2 cut(s) 103, 156
NdeII GATC 3 cut(s) 114, 402, 427
NlaIV GGNNCC 1 cut(s) 707
NmuCI GTSAC 1 cut(s) 623
NsiI ATGCAT 2 cut(s) 29, 136
NspI RCATGY 2 cut(s) 27, 31
OliI CACNNNNGTG 1 cut(s) 678
PaeI GCATGC 1 cut(s) 31
PagI TCATGA 1 cut(s) 740
PceI AGGCCT 1 cut(s) 78
PfeI GAWTC 3 cut(s) 4, 322, 436
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 2 cut(s) 650, 724
PleI GAGTC 2 cut(s) 179, 382
PpsI GAGTC 2 cut(s) 179, 382
Psp6I CCWGG 4 cut(s) 411, 514, 529, 732
PspGI CCWGG 4 cut(s) 411, 514, 529, 732
PspN4I GGNNCC 1 cut(s) 707
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 2 cut(s) 26, 678
SatI GCNGC 2 cut(s) 649, 723
Sau3AI GATC 3 cut(s) 114, 402, 427
SchI GAGTC 2 cut(s) 179, 383
ScrFI CCNGG 5 cut(s) 413, 516, 531, 687, 734
SduI GDGCHC 1 cut(s) 740
SetI ASST 4 cut(s) 95, 218, 349, 523
SfaNI GCATC 2 cut(s) 168, 448
SmiMI CAYNNNNRTG 2 cut(s) 26, 678
SphI GCATGC 1 cut(s) 31
Sse9I AATT 1 cut(s) 189
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 1 cut(s) 648
SspMI CTAG 1 cut(s) 140
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 5 cut(s) 411, 514, 529, 685, 732
TaaI ACNGT 4 cut(s) 151, 276, 623, 656
TaqI TCGA 1 cut(s) 113
TasI AATT 1 cut(s) 189
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 3 cut(s) 4, 322, 436
TscAI CASTG 5 cut(s) 48, 156, 394, 501, 680
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 4 cut(s) 17, 245, 335, 569
TspRI CASTG 5 cut(s) 48, 156, 394, 501, 680
XceI RCATGY 2 cut(s) 27, 31
XspI CTAG 1 cut(s) 140
Zsp2I ATGCAT 2 cut(s) 29, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.