Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010646

Physical Location & Seq

Genomic Coordinates Forward (+)

21485273 .. 21487550

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g27910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTGGTTCTACTGGCATTGCTTTAGCAATATGGATATTCTCTATTTTGCACAACATAGGAGGGACGCTTAGTGATGTTGGCTGTTACCTTTCTGGAGGACAATGGGTCTATGATCCGTCCTACCCTCTCTACAGTTCCACAGACTGTCCCTTCATCTGGAAGGAGTTCGATTGCCAAAAGAATGGTCGACCAGACATGGAGTACCTCAAGTACAGATGGCAGCCTACTTCTTGCCAGACACCAAGGTTCAGTGGTAGAAGATTTTTGGAAAGATTTAGAGGGAAGCGCATACTGTTTGTTGGAGACTCACTGAGTATGAATCAATGGCAGTCCCTCACATGCATGTTATACAAATCAGTGAAAGCCAAATACACCATCAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGCATATGATGTTTCAATCATGCTGTCCAGAAATGCATTTCTAGTAGATACAGTGCATATGAGAAATGGAAATAATGTTCTGATGCTGGACTCAATTGAGAATGGAAGTTACTGGAGGACCTTCGATGTTATCATCTTCAATACTTGGCATTGGTGGCTTCATACTGGAAAAAAACAACCGTGGGCTTTTGTTCGTTATGGACTCAATAATGTACACAGAGATATGAATCGGTTGGCGGCATATGAGAAAGCTCTAAATACATGGGCAAGATGGGTGGACTCAAGTGTGGACACTGTTAAAACCAAGATCTTCTTCCAGGGTGTATCTCCAGATCATTTGAATTGTTTAGGAGAAACGCAACCAGTGACGGGGACAGAATATCCAGGAGGTTCACATCCAGCAGAAGTTGTTTTAGAAAGGGTATTGAGAAGAATATCGAAACCAGTTCACTTGCTAAACATCACAAGGCTTTCGCAACTAAGAAAAGACAGTCACCCTTCAGCTTATGGCTTTGGTGGCAACCGTGGCATGGATTGTACCCACTGGTGTCTTCCCGGTGTTCCGGATACCTGGAACCAACTTCTATTTGCAGCACTCTTCCAGGGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

343

Amino Acids

39.18

Weight (kDa)

9.22

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	29 - 80	3.9e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	82 - 336	9.7e-84	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30900 AT2G30900
fragaria_vesca	FvH4_6g27910
malus_domestica	MD09G1233300.v1.1 MD17G1229600.v1.1 MD17G1229700.v1.1
prunus_persica	Prupe.3G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131461 RchiOBHm_Chr2g0131471
rosa_laevigata	RLG00000019184
rosa_multiflora	Rmu_sc0002869.1_g000010
rosa_roxburghii	Rroxscaffold_2G00112850
rosa_rugosa	Rorug02G0296800 Rorug02G0296900 Rorug02G0297000
rosa_samantha	Rh2AG350500 Rh2BG357000 Rh2CG336100 Rh2DG374900
rosa_wichuraiana	Rw2G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	979
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	110
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	4 cut(s)	206, 215, 630, 955
AfiI	CCNNNNNNNGG	4 cut(s)	159, 384, 785, 946
AgsI	TTSAA	3 cut(s)	432, 556, 757
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	4 cut(s)	732, 799, 986, 1017
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AloI	GAACNNNNNNTCC	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	411, 668, 920
AluI	AGCT	3 cut(s)	411, 668, 920
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	110
Aor13HI	TCCGGA	1 cut(s)	979
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	2 cut(s)	223, 1007
ArsI	GACNNNNNNTTYG	2 cut(s)	172, 204
Asp700I	GAANNNNTTC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	1 cut(s)	534
AsuC2I	CCSGG	1 cut(s)	972
AsuHPI	GGTGA	1 cut(s)	902
AvaII	GGWCC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	1025
BbsI	GAAGAC	1 cut(s)	959
BbvI	GCAGC	2 cut(s)	235, 1019
BccI	CCATC	3 cut(s)	213, 386, 681
BciT130I	CCWGG	4 cut(s)	734, 801, 988, 1019
BciVI	GTATCC	1 cut(s)	976
BcnI	CCSGG	1 cut(s)	972
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	133
BfuI	GTATCC	1 cut(s)	976
BglII	AGATCT	1 cut(s)	723
BisI	GCNGC	3 cut(s)	224, 654, 1008
BlsI	GCNGC	3 cut(s)	225, 655, 1009
Bme1390I	CCNGG	5 cut(s)	734, 801, 972, 988, 1019
Bme18I	GGWCC	1 cut(s)	534
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	534
BmiI	GGNNCC	2 cut(s)	992, 1024
BmrFI	CCNGG	5 cut(s)	734, 801, 972, 988, 1019
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	959
BpmI	CTGGAG	3 cut(s)	117, 550, 729
BpuEI	CTTGAG	2 cut(s)	194, 682
BpuMI	CCSGG	1 cut(s)	972
BsaBI	GATNNNNATC	1 cut(s)	642
BsaJI	CCNNGG	5 cut(s)	245, 596, 733, 940, 1018
BsaWI	WCCGGW	1 cut(s)	979
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 384, 785, 946
Bse1I	ACTGG	6 cut(s)	19, 533, 586, 779, 860, 965
Bse3DI	GCAATG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	642
BseAI	TCCGGA	1 cut(s)	979
BseBI	CCWGG	4 cut(s)	734, 801, 988, 1019
BseDI	CCNNGG	5 cut(s)	245, 596, 733, 940, 1018
BseGI	GGATG	1 cut(s)	811
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	4 cut(s)	159, 384, 785, 946
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	6 cut(s)	19, 533, 586, 779, 860, 965
BseXI	GCAGC	2 cut(s)	235, 1019
BshFI	GGCC	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	972, 980
BslFI	GGGAC	4 cut(s)	79, 135, 319, 802
BslI	CCNNNNNNNGG	4 cut(s)	159, 384, 785, 946
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	4 cut(s)	79, 135, 319, 802
BsnI	GGCC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	1025
Bsp13I	TCCGGA	1 cut(s)	979
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	3 cut(s)	115, 723, 748
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	979
BspLI	GGNNCC	2 cut(s)	992, 1024
BspPI	GGATC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	18
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	6 cut(s)	19, 533, 586, 779, 860, 965
BssECI	CCNNGG	5 cut(s)	245, 596, 733, 940, 1018
BssMI	GATC	3 cut(s)	115, 723, 748
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	4 cut(s)	734, 801, 988, 1019
Bst4CI	ACNGT	8 cut(s)	137, 149, 297, 469, 597, 712, 908, 941
Bst6I	CTCTTC	1 cut(s)	1019
BstAUI	TGTACA	1 cut(s)	628
BstDEI	CTNAG	3 cut(s)	71, 314, 896
BstDSI	CCRYGG	2 cut(s)	596, 940
BstF5I	GGATG	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	3 cut(s)	118, 726, 751
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	115, 723, 748
BstMWI	GCNNNNNNNGC	3 cut(s)	571, 933, 942
BstNI	CCWGG	4 cut(s)	734, 801, 988, 1019
BstNSI	RCATGY	2 cut(s)	345, 349
BstSCI	CCNGG	5 cut(s)	732, 799, 970, 986, 1017
BstSFI	CTRYAG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	235, 1019
BstV2I	GAAGAC	1 cut(s)	959
BstX2I	RGATCY	1 cut(s)	723
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	723
BsuI	GTATCC	1 cut(s)	976
BsuRI	GGCC	1 cut(s)	396
BtgI	CCRYGG	2 cut(s)	596, 940
BtsCI	GGATG	1 cut(s)	811
BtsIMutI	CAGTG	7 cut(s)	259, 311, 366, 474, 708, 786, 958
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	534
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	4 cut(s)	205, 214, 629, 954
CspCI	CAANNNNNGTGG	2 cut(s)	672, 707
CviAII	CATG	6 cut(s)	199, 342, 346, 436, 678, 946
CviQI	GTAC	4 cut(s)	205, 214, 629, 954
DdeI	CTNAG	3 cut(s)	71, 314, 896
DpnI	GATC	3 cut(s)	117, 725, 750
DpnII	GATC	3 cut(s)	115, 723, 748
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	1019
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	1019
Eco130I	CCWWGG	1 cut(s)	245
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	1025
Eco47I	GGWCC	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	900
EcoO109I	RGGNCCY	1 cut(s)	534
EcoRII	CCWGG	4 cut(s)	732, 799, 986, 1017
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	2 cut(s)	347, 454
EcoT38I	GRGCYC	1 cut(s)	1025
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	6 cut(s)	202, 345, 349, 439, 681, 949
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	4 cut(s)	79, 135, 319, 802
FatI	CATG	6 cut(s)	198, 341, 345, 435, 677, 945
FauNDI	CATATG	3 cut(s)	421, 474, 658
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	224, 654, 1008
FokI	GGATG	1 cut(s)	798
FriOI	GRGCYC	1 cut(s)	1025
Fsp4HI	GCNGC	3 cut(s)	224, 654, 1008
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	3 cut(s)	224, 654, 1008
GsuI	CTGGAG	3 cut(s)	117, 550, 729
HaeIII	GGCC	1 cut(s)	396
HapII	CCGG	2 cut(s)	972, 980
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	6 cut(s)	202, 345, 349, 439, 681, 949
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HincII	GTYRAC	1 cut(s)	191
HindII	GTYRAC	1 cut(s)	191
HinfI	GANTC	6 cut(s)	308, 322, 506, 618, 643, 695
HpaII	CCGG	2 cut(s)	972, 980
HphI	GGTGA	1 cut(s)	902
Hpy166II	GTNNAC	6 cut(s)	191, 631, 694, 706, 809, 865
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	6 cut(s)	96, 160, 444, 746, 980, 1026
Hpy8I	GTNNAC	6 cut(s)	191, 631, 694, 706, 809, 865
HpyAV	CCTTC	4 cut(s)	157, 163, 547, 924
HpyCH4III	ACNGT	8 cut(s)	137, 149, 297, 469, 597, 712, 908, 941
HpyCH4V	TGCA	5 cut(s)	52, 345, 452, 472, 1007
HpyF10VI	GCNNNNNNNGC	3 cut(s)	571, 933, 942
HpyF3I	CTNAG	3 cut(s)	71, 314, 896
Hsp92II	CATG	6 cut(s)	202, 345, 349, 439, 681, 949
HspAI	GCGC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	979
Kzo9I	GATC	3 cut(s)	115, 723, 748
LmnI	GCTCC	1 cut(s)	1028
Lsp1109I	GCAGC	2 cut(s)	235, 1019
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	4 cut(s)	86, 524, 781, 908
MalI	GATC	3 cut(s)	117, 725, 750
MboI	GATC	3 cut(s)	115, 723, 748
MboII	GAAGA	7 cut(s)	273, 544, 718, 721, 858, 959, 1006
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	1025
MluCI	AATT	2 cut(s)	510, 757
MlyI	GAGTC	4 cut(s)	302, 500, 612, 689
MmeI	TCCRAC	1 cut(s)	283
Mph1103I	ATGCAT	2 cut(s)	347, 454
MroI	TCCGGA	1 cut(s)	979
MroXI	GAANNNNTTC	1 cut(s)	167
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	1 cut(s)	344
MspI	CCGG	2 cut(s)	972, 980
MspR9I	CCNGG	5 cut(s)	734, 801, 972, 988, 1019
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	4 cut(s)	734, 801, 988, 1019
MwoI	GCNNNNNNNGC	3 cut(s)	571, 933, 942
NciI	CCSGG	1 cut(s)	972
NdeI	CATATG	3 cut(s)	421, 474, 658
NdeII	GATC	3 cut(s)	115, 723, 748
NlaIII	CATG	6 cut(s)	202, 345, 349, 439, 681, 949
NlaIV	GGNNCC	2 cut(s)	992, 1024
NmuCI	GTSAC	2 cut(s)	781, 908
NsiI	ATGCAT	2 cut(s)	347, 454
NspI	RCATGY	2 cut(s)	345, 349
PceI	AGGCCT	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	322, 643
PfoI	TCCNGGA	1 cut(s)	799
PkrI	GCNGC	3 cut(s)	225, 655, 1009
PleI	GAGTC	4 cut(s)	302, 500, 612, 689
PpsI	GAGTC	4 cut(s)	302, 500, 612, 689
PpuMI	RGGWCCY	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	534
Psp6I	CCWGG	4 cut(s)	732, 799, 986, 1017
PspGI	CCWGG	4 cut(s)	732, 799, 986, 1017
PspN4I	GGNNCC	2 cut(s)	992, 1024
PspPI	GGNCC	1 cut(s)	534
PspPPI	RGGWCCY	1 cut(s)	534
PsuI	RGATCY	1 cut(s)	723
RsaI	GTAC	4 cut(s)	206, 215, 630, 955
RsaNI	GTAC	4 cut(s)	205, 214, 629, 954
RseI	CAYNNNNRTG	1 cut(s)	344
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	3 cut(s)	224, 654, 1008
Sau3AI	GATC	3 cut(s)	115, 723, 748
Sau96I	GGNCC	1 cut(s)	534
SchI	GAGTC	4 cut(s)	302, 500, 612, 689
ScrFI	CCNGG	5 cut(s)	734, 801, 972, 988, 1019
SduI	GDGCHC	1 cut(s)	1025
SetI	ASST	9 cut(s)	93, 210, 251, 413, 539, 670, 808, 922, 989
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	2 cut(s)	209, 697
SmoI	CTYRAG	2 cut(s)	209, 697
Sse9I	AATT	2 cut(s)	510, 757
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	653
SspMI	CTAG	1 cut(s)	458
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	5 cut(s)	732, 799, 970, 986, 1017
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	8 cut(s)	137, 149, 297, 469, 597, 712, 908, 941
TaqI	TCGA	4 cut(s)	171, 190, 540, 854
TasI	AATT	2 cut(s)	510, 757
TatI	WGTACW	2 cut(s)	213, 628
TauI	GCSGC	1 cut(s)	656
TfiI	GAWTC	2 cut(s)	322, 643
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TscAI	CASTG	7 cut(s)	259, 318, 366, 474, 715, 786, 965
TseFI	GTSAC	2 cut(s)	781, 908
TseI	GCWGC	2 cut(s)	223, 1007
Tsp45I	GTSAC	2 cut(s)	781, 908
TspDTI	ATGAA	4 cut(s)	145, 335, 566, 656
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	7 cut(s)	259, 318, 366, 474, 715, 786, 965
VpaK11BI	GGWCC	1 cut(s)	534
XceI	RCATGY	2 cut(s)	345, 349
XmiI	GTMKAC	1 cut(s)	190
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	458
Zsp2I	ATGCAT	2 cut(s)	347, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.