Rorug02G0296900

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010646
Physical Location & Seq
Forward (+)
32938968 .. 32941204
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0296900.1

Sequence Viewer

Length: 1899 bp
ATGGAAACGAATAATATAACGGTTAGGATGAGCAGAAGAAGATTTGGGTCAGTTCGATCTGCTAACAGTCTAGTATATGGAGATAGAACACTTGAAGGTAGTCCTTCTCCTTTGCTCAAGAGACAACAGCCCCCATTTGATTCCCCAGAGTCCCCTTCAAGAGCAAGAGAACTCCATATGGCACGGAGGGACATAGGTCGATACAGAGAAACCAGAACTGACACAGACTCGGTCAAAGAACAGGCGCAAATTGAGTTATATGATGCAAAGAAGATAGCCAAAGATCTCTCCTCAGTAATTGAGGAATCAAACTTGATGGCCAGAGGACACACGAGAGAGCTTGAAGCACTAAGGAGACCGAGAAGGCGTGGAGATAATCGAGTATTATTGCCTGTTGGGAATGATCATGTGGAGAATAACAAAAATTATGAACAAGTCATGAGAGAATTGCAGCTTTTGAAACAGGAACTGAGCATGCTCAAGATCGATATGGCTAATGTTTTGGAAGAGAAATCGCAGGCAGAGAAGCAAGCAGAAGCCGCAAATGAAAAGATGATGTTTTATACAAGCTCGGCGGAAGCTATCAGGAAGGAGATTGAGGAAGCTGATGAAGAGCAAGTGCTAGTTGAGTTGGCTCAGATTGAAGCCTTGAAAGAATTTGGAGATATTGAAGCTCAGAGACAACAAGAAGCCAATCAACTCTCATCTGCAGTGGAGGAAACCAGGAAAAAAGTGAAAGATATTACTGAAGAGATTGATCACTCAAAACAAGTTGAAACCAAATTGTCTGTCACATTGTCTAATGTCGATGCGTTACAGAATGAACTAAAGCTAGTTAAAGGAATGAACAAAAGTAGTAGTCAAATGACTGATAGCTTTCAGCTTTCGGAAACCAGTTTCCAAAGAGCAGAGGACTCGGAAGCTTCACCCTTGTTACACTCAATCACAGAAGAACTAGAGGCGGCAAAGAAAGAACTGGCTGCAGTAAAGGAAGAAGGATTCCAGTACATGGCCTCCATGGATGTTATAAGAAACGAGATGAAGCATATCACAGATCAGACAGCTCGGATAAAGAAGGCAGAGGATAAAGCAGATTTAACTGTTCAAAATCTCAATTCAAAGCTTCTCAGAGCCAAAGTCAAGTTGGAAGCTGTAACTGCATCTGAAGAAAAAGCAAAATCAATTCAATCCAGTCTCTCACTCACTCTTGAACAGCTTAAGAAAGATGCTGATGCCGCAAACAAAGAGAAGGAGCATTCCAGTGAAGAAGCTGCAACCATTAAGTCGGAAATACTCAAGATTGAATCGGATATAGACATAGCTGAGGAAAAATTTGAGGCTGCAATGCAAGAGCTTGAAGCAGTAAAATCTTCAGAGGCTGTAGCTCTTGAAAACCTCAAAATACTTATTGAGAATACCATGAGAGCTAGAGCTTCTGCAGCTCAGAGTAGTTCTTCAATTACCATATCCAAGTTTGAATATGAGTACTTGACTGGACGTGCAGTTGGGGCTGAAGAAATTGCTGATAAAAAGGTAGCAGCTGCTCAGGCTTGGGTTGAAGCTATAAAGGCCAGTGAGAAGGAAATATTGATAAAGATGGACTTAGCTGAGAAAGAGCTGAAAGAAACGAAGGCCTCTAGACCTGAAAGACAACCTTCTGGACAGAGGATGCTTGAGGGACAAGAATTACAAATTTGGAGACAAAAGAGGGACAGAAATGCAGCATCTGGAAACCGGCGAACTAATGGAAATTTAACTCCATCAAGGCGAGCCAAGTTCCGAAAATCTGCCTCTCCTGGAGCTCGGCATATGAATAATTTCCCCATTCAGAAAAAGACGAAGGTAATGCCTAATCTGGGCAAGTTTTTTGGGGGTAAGAGAATTGCAAAAGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

632

Amino Acids

71.34

Weight (kDa)

6.57

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WEMBL PF05701 56 - 546 3e-28 Weak chloroplast movement under blue light
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
AccB7I CCANNNNNTGG 1 cut(s) 1009
AciI CCGC 4 cut(s) 540, 575, 962, 1236
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 4 cut(s) 656, 1331, 1692, 1750
AcuI CTGAAG 4 cut(s) 768, 1185, 1356, 1533
AfaI GTAC 2 cut(s) 1007, 1487
AfiI CCNNNNNNNGG 2 cut(s) 1009, 1856
AflII CTTAAG 1 cut(s) 1217
AjiI CACGTC 1 cut(s) 1499
AjnI CCWGG 2 cut(s) 722, 1795
Alw21I GWGCWC 1 cut(s) 1804
Alw26I GTCTC 5 cut(s) 115, 349, 673, 1199, 1693
AlwNI CAGNNNCTG 3 cut(s) 469, 1379, 1727
AoxI GGCC 4 cut(s) 318, 1011, 1569, 1632
ApeKI GCWGC 8 cut(s) 451, 980, 1271, 1340, 1439, 1538, 1541, 1721
ApoI RAATTY 4 cut(s) 656, 1331, 1692, 1750
ArsI GACNNNNNNTTYG 2 cut(s) 774, 806
Asp700I GAANNNNTTC 1 cut(s) 1817
AspLEI GCGC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 918
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 1804
BauI CACGAG 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 1804
BbvCI CCTCAGC 1 cut(s) 1323
BbvI GCAGC 8 cut(s) 463, 967, 1258, 1327, 1451, 1528, 1550, 1733
BccI CCATC 3 cut(s) 310, 1591, 1768
BcgI CGANNNNNNTGC 4 cut(s) 897, 931, 1828, 1862
BciT130I CCWGG 2 cut(s) 724, 1797
BclI TGATCA 2 cut(s) 403, 757
BcoDI GTCTC 5 cut(s) 115, 349, 673, 1199, 1693
BfaI CTAG 6 cut(s) 71, 623, 833, 956, 1428, 1638
BfmI CTRYAG 4 cut(s) 708, 981, 1380, 1437
BfrI CTTAAG 1 cut(s) 1217
BglII AGATCT 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 1487
Bme1390I CCNGG 2 cut(s) 724, 1797
BmgBI CACGTC 1 cut(s) 1499
BmrFI CCNGG 2 cut(s) 724, 1797
BmsI GCATC 7 cut(s) 253, 799, 1169, 1216, 1222, 1659, 1733
BoxI GACNNNNGTC 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 1818
Bpu10I CCTNAGC 2 cut(s) 1323, 1545
BpuEI CTTGAG 4 cut(s) 101, 464, 1280, 1694
Bsa29I ATCGAT 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 1017
BsaXI ACNNNNNCTCC 2 cut(s) 998, 1028
Bsc4I CCNNNNNNNGG 2 cut(s) 1009, 1856
Bse118I RCCGGY 1 cut(s) 1734
Bse1I ACTGG 7 cut(s) 894, 981, 1003, 1191, 1260, 1498, 1572
Bse3DI GCAATG 1 cut(s) 1350
BseBI CCWGG 2 cut(s) 724, 1797
BseCI ATCGAT 1 cut(s) 486
BseDI CCNNGG 1 cut(s) 1017
BseGI GGATG 3 cut(s) 33, 1027, 1674
BseLI CCNNNNNNNGG 2 cut(s) 1009, 1856
BseMI GCAATG 1 cut(s) 1350
BseMII CTCAG 9 cut(s) 306, 461, 650, 689, 1141, 1314, 1457, 1559, 1599
BseNI ACTGG 7 cut(s) 894, 981, 1003, 1191, 1260, 1498, 1572
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 8 cut(s) 463, 967, 1258, 1327, 1451, 1528, 1550, 1733
BsgI GTGCAG 1 cut(s) 1521
BshFI GGCC 4 cut(s) 320, 1013, 1571, 1634
BshVI ATCGAT 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 1804
BsiSI CCGG 1 cut(s) 1735
BslFI GGGAC 4 cut(s) 136, 203, 1692, 1724
BslI CCNNNNNNNGG 2 cut(s) 1009, 1856
BsmAI GTCTC 5 cut(s) 115, 349, 673, 1199, 1693
BsmFI GGGAC 4 cut(s) 136, 203, 1692, 1724
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 4 cut(s) 320, 1013, 1571, 1634
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 1804
Bsp143I GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
Bsp19I CCATGG 1 cut(s) 1017
BspACI CCGC 4 cut(s) 540, 575, 962, 1236
BspANI GGCC 4 cut(s) 320, 1013, 1571, 1634
BspCNI CTCAG 9 cut(s) 305, 462, 649, 688, 1140, 1315, 1456, 1558, 1600
BspDI ATCGAT 1 cut(s) 486
BspHI TCATGA 1 cut(s) 438
BspMAI CTGCAG 3 cut(s) 712, 985, 1441
BspQI GCTCTTC 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 1217
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 1350
BsrFI RCCGGY 1 cut(s) 1734
BsrI ACTGG 7 cut(s) 894, 981, 1003, 1191, 1260, 1498, 1572
BssAI RCCGGY 1 cut(s) 1734
BssECI CCNNGG 1 cut(s) 1017
BssMI GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 1017
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 724, 1797
Bst4CI ACNGT 3 cut(s) 22, 68, 1102
Bst6I CTCTTC 3 cut(s) 501, 606, 744
BstAFI CTTAAG 1 cut(s) 1217
BstC8I GCNNGC 4 cut(s) 476, 519, 531, 1770
BstDSI CCRYGG 1 cut(s) 1017
BstF5I GGATG 3 cut(s) 33, 1027, 1674
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 6 cut(s) 59, 286, 406, 486, 760, 1057
BstMAI GTCTC 5 cut(s) 115, 349, 673, 1199, 1693
BstMBI GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
BstMWI GCNNNNNNNGC 7 cut(s) 539, 1157, 1235, 1439, 1508, 1547, 1568
BstNI CCWGG 2 cut(s) 724, 1797
BstNSI RCATGY 1 cut(s) 478
BstPAI GACNNNNGTC 1 cut(s) 195
BstSCI CCNGG 2 cut(s) 722, 1795
BstSFI CTRYAG 4 cut(s) 708, 981, 1380, 1437
BstV1I GCAGC 8 cut(s) 463, 967, 1258, 1327, 1451, 1528, 1550, 1733
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
Bsu15I ATCGAT 1 cut(s) 486
BsuRI GGCC 4 cut(s) 320, 1013, 1571, 1634
BsuTUI ATCGAT 1 cut(s) 486
BtgI CCRYGG 1 cut(s) 1017
BtrI CACGTC 1 cut(s) 1499
BtsCI GGATG 3 cut(s) 33, 1027, 1674
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 3 cut(s) 717, 1267, 1579
Cac8I GCNNGC 4 cut(s) 476, 519, 531, 1770
CaiI CAGNNNCTG 3 cut(s) 469, 1379, 1727
CciI TCATGA 1 cut(s) 438
CfoI GCGC 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 1734
ClaI ATCGAT 1 cut(s) 486
Csp6I GTAC 2 cut(s) 1006, 1486
CviAII CATG 6 cut(s) 407, 439, 475, 1009, 1018, 1420
CviQI GTAC 2 cut(s) 1006, 1486
DpnI GATC 6 cut(s) 58, 285, 405, 485, 759, 1056
DpnII GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
EaeI YGGCCR 1 cut(s) 318
Eam1104I CTCTTC 3 cut(s) 501, 606, 744
EarI CTCTTC 3 cut(s) 501, 606, 744
EciI GGCGGA 1 cut(s) 590
Ecl136II GAGCTC 1 cut(s) 1802
Eco130I CCWWGG 1 cut(s) 1017
Eco147I AGGCCT 1 cut(s) 1634
Eco24I GRGCYC 1 cut(s) 1804
Eco31I GGTCTC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 1802
Eco57I CTGAAG 4 cut(s) 768, 1185, 1356, 1533
EcoICRI GAGCTC 1 cut(s) 1802
EcoRII CCWGG 2 cut(s) 722, 1795
EcoT14I CCWWGG 1 cut(s) 1017
EcoT38I GRGCYC 1 cut(s) 1804
ErhI CCWWGG 1 cut(s) 1017
FaeI CATG 6 cut(s) 410, 442, 478, 1012, 1021, 1423
FalI AAGNNNNNCTT 4 cut(s) 1586, 1618, 1639, 1671
FaqI GGGAC 4 cut(s) 136, 203, 1692, 1724
FatI CATG 6 cut(s) 406, 438, 474, 1008, 1017, 1419
FauNDI CATATG 2 cut(s) 177, 1809
FbaI TGATCA 2 cut(s) 403, 757
FokI GGATG 3 cut(s) 40, 1034, 1681
FriOI GRGCYC 1 cut(s) 1804
FspBI CTAG 6 cut(s) 71, 623, 833, 956, 1428, 1638
GlaI GCGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 1818
HaeIII GGCC 4 cut(s) 320, 1013, 1571, 1634
HapII CCGG 1 cut(s) 1735
HhaI GCGC 1 cut(s) 247
Hin1II CATG 6 cut(s) 410, 442, 478, 1012, 1021, 1423
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HindIII AAGCTT 2 cut(s) 921, 1121
HinfI GANTC 7 cut(s) 140, 149, 227, 305, 914, 999, 1304
HpaII CCGG 1 cut(s) 1735
HphI GGTGA 1 cut(s) 918
HpyCH4III ACNGT 3 cut(s) 22, 68, 1102
HpyCH4IV ACGT 1 cut(s) 1498
HpyF10VI GCNNNNNNNGC 7 cut(s) 539, 1157, 1235, 1439, 1508, 1547, 1568
HpySE526I ACGT 1 cut(s) 1498
Hsp92II CATG 6 cut(s) 410, 442, 478, 1012, 1021, 1423
HspAI GCGC 1 cut(s) 245
Ksp22I TGATCA 2 cut(s) 403, 757
Kzo9I GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 2 cut(s) 1252, 1799
Lsp1109I GCAGC 8 cut(s) 463, 967, 1258, 1327, 1451, 1528, 1550, 1733
LweI GCATC 7 cut(s) 253, 799, 1169, 1216, 1222, 1659, 1733
MaeI CTAG 6 cut(s) 71, 623, 833, 956, 1428, 1638
MaeII ACGT 1 cut(s) 1498
MaeIII GTNAC 4 cut(s) 790, 813, 933, 1153
MalI GATC 6 cut(s) 58, 285, 405, 485, 759, 1056
MboI GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 1804
MlsI TGGCCA 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 3 cut(s) 158, 221, 908
MmeI TCCRAC 2 cut(s) 1125, 1266
Mox20I TGGCCA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 1817
MscI TGGCCA 1 cut(s) 320
MseI TTAA 5 cut(s) 837, 1097, 1218, 1281, 1754
MslI CAYNNNNRTG 1 cut(s) 1260
Msp20I TGGCCA 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 1541
MspCI CTTAAG 1 cut(s) 1217
MspI CCGG 1 cut(s) 1735
MspR9I CCNGG 2 cut(s) 724, 1797
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 2 cut(s) 724, 1797
MwoI GCNNNNNNNGC 7 cut(s) 539, 1157, 1235, 1439, 1508, 1547, 1568
NcoI CCATGG 1 cut(s) 1017
NdeI CATATG 2 cut(s) 177, 1809
NdeII GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
NlaIII CATG 6 cut(s) 410, 442, 478, 1012, 1021, 1423
NmeAIII GCCGAG 2 cut(s) 551, 1783
NmuCI GTSAC 1 cut(s) 790
NspI RCATGY 1 cut(s) 478
PaeI GCATGC 1 cut(s) 478
PagI TCATGA 1 cut(s) 438
PceI AGGCCT 1 cut(s) 1634
PciSI GCTCTTC 1 cut(s) 606
PctI GAATGC 1 cut(s) 1255
PdmI GAANNNNTTC 1 cut(s) 1817
PfeI GAWTC 4 cut(s) 140, 305, 999, 1304
PflFI GACNNNGTC 1 cut(s) 230
PflMI CCANNNNNTGG 1 cut(s) 1009
PfoI TCCNGGA 1 cut(s) 1795
PleI GAGTC 3 cut(s) 157, 221, 908
PpsI GAGTC 3 cut(s) 157, 221, 908
PshAI GACNNNNGTC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 1028
Psp124BI GAGCTC 1 cut(s) 1804
Psp6I CCWGG 2 cut(s) 722, 1795
PspGI CCWGG 2 cut(s) 722, 1795
PstI CTGCAG 3 cut(s) 712, 985, 1441
PstNI CAGNNNCTG 3 cut(s) 469, 1379, 1727
PsuI RGATCY 1 cut(s) 283
PsyI GACNNNGTC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 1541
RsaI GTAC 2 cut(s) 1007, 1487
RsaNI GTAC 2 cut(s) 1006, 1486
RseI CAYNNNNRTG 1 cut(s) 1260
SacI GAGCTC 1 cut(s) 1804
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 5 cut(s) 837, 1097, 1218, 1281, 1754
Sau3AI GATC 6 cut(s) 56, 283, 403, 483, 757, 1054
ScaI AGTACT 1 cut(s) 1487
SchI GAGTC 3 cut(s) 158, 221, 908
ScrFI CCNGG 2 cut(s) 724, 1797
SduI GDGCHC 1 cut(s) 1804
SfaNI GCATC 7 cut(s) 253, 799, 1169, 1216, 1222, 1659, 1733
SfcI CTRYAG 4 cut(s) 708, 981, 1380, 1437
SmiMI CAYNNNNRTG 1 cut(s) 1260
SmlI CTYRAG 5 cut(s) 116, 479, 1217, 1295, 1673
SmoI CTYRAG 5 cut(s) 116, 479, 1217, 1295, 1673
SphI GCATGC 1 cut(s) 478
SseBI AGGCCT 1 cut(s) 1634
SsiI CCGC 4 cut(s) 540, 575, 962, 1236
SspI AATATT 1 cut(s) 1587
SspMI CTAG 6 cut(s) 71, 623, 833, 956, 1428, 1638
SstI GAGCTC 1 cut(s) 1804
StuI AGGCCT 1 cut(s) 1634
StyD4I CCNGG 2 cut(s) 722, 1795
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 3 cut(s) 22, 68, 1102
TaiI ACGT 1 cut(s) 1501
TaqI TCGA 5 cut(s) 55, 199, 379, 486, 807
TaqII GACCGA 2 cut(s) 220, 373
TatI WGTACW 2 cut(s) 1005, 1485
TauI GCSGC 3 cut(s) 542, 965, 1238
TfiI GAWTC 4 cut(s) 140, 305, 999, 1304
Tru1I TTAA 5 cut(s) 837, 1097, 1218, 1281, 1754
Tru9I TTAA 5 cut(s) 837, 1097, 1218, 1281, 1754
TscAI CASTG 3 cut(s) 717, 1267, 1579
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 8 cut(s) 451, 980, 1271, 1340, 1439, 1538, 1541, 1721
Tsp45I GTSAC 1 cut(s) 790
TspDTI ATGAA 7 cut(s) 444, 561, 624, 837, 860, 1055, 1826
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 3 cut(s) 717, 1267, 1579
Tth111I GACNNNGTC 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 1009
Vha464I CTTAAG 1 cut(s) 1217
XapI RAATTY 4 cut(s) 656, 1331, 1692, 1750
XbaI TCTAGA 1 cut(s) 1637
XceI RCATGY 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 1141
XmnI GAANNNNTTC 1 cut(s) 1817
XspI CTAG 6 cut(s) 71, 623, 833, 956, 1428, 1638
ZrmI AGTACT 1 cut(s) 1487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.