Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010646

Physical Location & Seq

Genomic Coordinates Forward (+)

45496205 .. 45500749

Gene Structure 4545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGAGTTTTGAGATATACACATATGGCTTGTTCTACTGCCATTGCTTTAGCAATATGCATTTTCTCTCTTTTTCACAATATAGGAGGGACGCTTAGTGATGGGGGCTGTGACCTTTCTCGAGGACAATGGGTCTATGATCCGTCCTATCCTCTCTACAGTTCCACAGACTGTCCCTTCATTTGGAAGGAGTTTGATTGCCAAAAAAATGGTCGACCAGACAATGAGTACCTCAAGTACAGATGGCAGCCCGCTTCTTGCCAGACACCAAGGTTCAGTGGTAGCAGATTTTTGGAAAGATTTAGAGGGAAGCGCATACTGTTTGTAGGAGACTCACTGAGTATGAATCAATGGCAGTCCCTCACATGCATGCTTTACAAATCAGTGCAAGCCAAATACACCATAAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGCATATGATGTTTCGATCATGCTGTCCCGAAATGCATTTCTAGTAGATACAGTGCATATGAGAAATGGGAATGTTCTGATGCTGGACTCAATTGAGAATGGAAGTTACTGGGGAACCTTTGATGTTATCATCTTCAATACATGGCATTGGTGGCTTCATACTGGAAAAAAACAACCGTGGGCTTTTGTTCGTTATGGACTGAATAATGCCCACAAAGACATGAATCGCATGGTGGCGTATGAGAAAGCTCTAAATACATGGAAGAGATGGGTGGAGTCAAGTGTGGACACTGATAAAACAAAGATCTTCTTCCAGGGTGTTTCTCCCGATCATGTGAATCCAAGAGAATGGGGTGATGATGCAAACTCAAAGAGTTGTTTGGGAGAAACTGAACCAGTGAAGGGGACACAATATCCAGGAGGTTCACACCCAGGAGAAGTTGTTTTAGAAAGGGTATTGAGAAAAATGTCAAAGCCAGTTCATTTGCTAAACATCACCAGACTTTCACAACTAAGAAAAGACAGTCACCCTTCAGCCTATGGCTTCAGCGGCCACCGTGGCATGGATTGTACCCACTGGTCCAGACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

343

Amino Acids

39.41

Weight (kDa)

9.13

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	36 - 88	8e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	90 - 340	3.1e-75	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30900 AT2G30900
fragaria_vesca	FvH4_6g27910
malus_domestica	MD09G1233300.v1.1 MD17G1229600.v1.1 MD17G1229700.v1.1
prunus_persica	Prupe.3G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131461 RchiOBHm_Chr2g0131471
rosa_laevigata	RLG00000019184
rosa_multiflora	Rmu_sc0002869.1_g000010
rosa_roxburghii	Rroxscaffold_2G00112850
rosa_rugosa	Rorug02G0296800 Rorug02G0296900 Rorug02G0297000
rosa_samantha	Rh2AG350500 Rh2BG357000 Rh2CG336100 Rh2DG374900
rosa_wichuraiana	Rw2G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	214
AciI	CCGC	2 cut(s)	252, 990
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	991
AcuI	CTGAAG	2 cut(s)	957, 970
AfaI	GTAC	3 cut(s)	230, 239, 1012
AfiI	CCNNNNNNNGG	4 cut(s)	183, 408, 842, 1003
AgsI	TTSAA	1 cut(s)	577
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	3 cut(s)	753, 856, 871
AluBI	AGCT	2 cut(s)	435, 689
AluI	AGCT	2 cut(s)	435, 689
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	134
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	418, 991
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	1020
AsuHPI	GGTGA	3 cut(s)	806, 928, 959
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	1020
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	95, 237, 702
BciT130I	CCWGG	3 cut(s)	755, 858, 873
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	482, 1030
BfmI	CTRYAG	1 cut(s)	157
BglI	GCCNNNNNGGC	1 cut(s)	999
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	2 cut(s)	248, 991
BlsI	GCNGC	2 cut(s)	249, 992
Bme1390I	CCNGG	3 cut(s)	755, 858, 873
Bme18I	GGWCC	1 cut(s)	1020
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	1020
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	3 cut(s)	755, 858, 873
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	510, 790
BmuI	ACTGGG	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	269, 617, 754, 871, 997
BsaXI	ACNNNNNCTCC	2 cut(s)	867, 897
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 408, 842, 1003
Bse1I	ACTGG	5 cut(s)	554, 607, 836, 917, 1022
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	3 cut(s)	755, 858, 873
BseDI	CCNNGG	5 cut(s)	269, 617, 754, 871, 997
BseLI	CCNNNNNNNGG	4 cut(s)	183, 408, 842, 1003
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	5 cut(s)	554, 607, 836, 917, 1022
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	420, 993
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	5 cut(s)	103, 159, 343, 451, 859
BslI	CCNNNNNNNGG	4 cut(s)	183, 408, 842, 1003
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	5 cut(s)	103, 159, 343, 451, 859
BsnI	GGCC	2 cut(s)	420, 993
BsoBI	CYCGRG	1 cut(s)	120
Bsp143I	GATC	4 cut(s)	139, 456, 744, 769
BspACI	CCGC	2 cut(s)	252, 990
BspANI	GGCC	2 cut(s)	420, 993
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	556
BspPI	GGATC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	5 cut(s)	554, 607, 836, 917, 1022
BssECI	CCNNGG	5 cut(s)	269, 617, 754, 871, 997
BssMI	GATC	4 cut(s)	139, 456, 744, 769
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	3 cut(s)	755, 858, 873
Bst4CI	ACNGT	7 cut(s)	161, 173, 321, 493, 618, 965, 998
Bst6I	CTCTTC	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	252, 371, 390
BstDEI	CTNAG	3 cut(s)	95, 338, 953
BstDSI	CCRYGG	2 cut(s)	617, 997
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	4 cut(s)	142, 459, 747, 772
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	4 cut(s)	139, 456, 744, 769
BstMWI	GCNNNNNNNGC	3 cut(s)	592, 990, 999
BstNI	CCWGG	3 cut(s)	755, 858, 873
BstNSI	RCATGY	2 cut(s)	369, 373
BstSCI	CCNGG	3 cut(s)	753, 856, 871
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	744
BstXI	CCANNNNNNTGG	2 cut(s)	209, 789
BstYI	RGATCY	1 cut(s)	744
BsuRI	GGCC	2 cut(s)	420, 993
BtgI	CCRYGG	2 cut(s)	617, 997
BtsIMutI	CAGTG	7 cut(s)	283, 335, 390, 498, 729, 843, 1015
Cac8I	GCNNGC	3 cut(s)	252, 371, 390
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	1020
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	229, 238, 1011
CviAII	CATG	9 cut(s)	366, 370, 460, 582, 661, 670, 699, 773, 1003
CviQI	GTAC	3 cut(s)	229, 238, 1011
DdeI	CTNAG	3 cut(s)	95, 338, 953
DpnI	GATC	4 cut(s)	141, 458, 746, 771
DpnII	GATC	4 cut(s)	139, 456, 744, 769
DriI	GACNNNNNGTC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	1 cut(s)	698
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	1020
Eco57I	CTGAAG	2 cut(s)	957, 970
Eco88I	CYCGRG	1 cut(s)	120
EcoRII	CCWGG	3 cut(s)	753, 856, 871
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	3 cut(s)	62, 371, 478
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	9 cut(s)	369, 373, 463, 585, 664, 673, 702, 776, 1006
FalI	AAGNNNNNCTT	2 cut(s)	734, 766
FaqI	GGGAC	5 cut(s)	103, 159, 343, 451, 859
FatI	CATG	9 cut(s)	365, 369, 459, 581, 660, 669, 698, 772, 1002
FauI	CCCGC	1 cut(s)	259
FauNDI	CATATG	3 cut(s)	24, 445, 498
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	248, 991
Fsp4HI	GCNGC	2 cut(s)	248, 991
FspBI	CTAG	2 cut(s)	482, 1030
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	2 cut(s)	248, 991
HaeIII	GGCC	2 cut(s)	420, 993
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	315
Hin1II	CATG	9 cut(s)	369, 373, 463, 585, 664, 673, 702, 776, 1006
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HinfI	GANTC	6 cut(s)	332, 346, 527, 664, 716, 778
HphI	GGTGA	3 cut(s)	806, 928, 959
Hpy166II	GTNNAC	3 cut(s)	215, 727, 866
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	4 cut(s)	120, 468, 767, 1023
Hpy8I	GTNNAC	3 cut(s)	215, 727, 866
HpyAV	CCTTC	4 cut(s)	181, 187, 835, 981
HpyCH4III	ACNGT	7 cut(s)	161, 173, 321, 493, 618, 965, 998
HpyCH4V	TGCA	6 cut(s)	60, 369, 388, 476, 496, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	592, 990, 999
HpyF3I	CTNAG	3 cut(s)	95, 338, 953
Hsp92II	CATG	9 cut(s)	369, 373, 463, 585, 664, 673, 702, 776, 1006
HspAI	GCGC	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	139, 456, 744, 769
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	510, 790
MaeI	CTAG	2 cut(s)	482, 1030
MaeIII	GTNAC	3 cut(s)	110, 545, 965
MalI	GATC	4 cut(s)	141, 458, 746, 771
MboI	GATC	4 cut(s)	139, 456, 744, 769
MboII	GAAGA	4 cut(s)	565, 715, 739, 742
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	1 cut(s)	744
MluCI	AATT	1 cut(s)	531
MlyI	GAGTC	3 cut(s)	326, 521, 725
MnlI	CCTC	9 cut(s)	80, 116, 162, 242, 299, 371, 410, 431, 854
Mph1103I	ATGCAT	3 cut(s)	62, 371, 478
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	990
MspR9I	CCNGG	3 cut(s)	755, 858, 873
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	3 cut(s)	755, 858, 873
MwoI	GCNNNNNNNGC	3 cut(s)	592, 990, 999
NdeI	CATATG	3 cut(s)	24, 445, 498
NdeII	GATC	4 cut(s)	139, 456, 744, 769
NlaIII	CATG	9 cut(s)	369, 373, 463, 585, 664, 673, 702, 776, 1006
NlaIV	GGNNCC	1 cut(s)	556
NmuCI	GTSAC	2 cut(s)	110, 965
NsiI	ATGCAT	3 cut(s)	62, 371, 478
NspI	RCATGY	2 cut(s)	369, 373
PaeI	GCATGC	1 cut(s)	373
PaeR7I	CTCGAG	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	346, 664, 778
PfoI	TCCNGGA	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	249, 992
PleI	GAGTC	3 cut(s)	326, 521, 724
PpsI	GAGTC	3 cut(s)	326, 521, 724
Psp6I	CCWGG	3 cut(s)	753, 856, 871
PspGI	CCWGG	3 cut(s)	753, 856, 871
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	1 cut(s)	1020
PsuI	RGATCY	1 cut(s)	744
RsaI	GTAC	3 cut(s)	230, 239, 1012
RsaNI	GTAC	3 cut(s)	229, 238, 1011
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	213
SatI	GCNGC	2 cut(s)	248, 991
Sau3AI	GATC	4 cut(s)	139, 456, 744, 769
Sau96I	GGNCC	1 cut(s)	1020
SchI	GAGTC	3 cut(s)	326, 521, 725
ScrFI	CCNGG	3 cut(s)	755, 858, 873
SetI	ASST	7 cut(s)	117, 234, 275, 437, 560, 691, 865
SfaNI	GCATC	2 cut(s)	510, 790
SfcI	CTRYAG	1 cut(s)	157
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	1020
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	120, 233
SmoI	CTYRAG	2 cut(s)	120, 233
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	1 cut(s)	531
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	2 cut(s)	252, 990
SspMI	CTAG	2 cut(s)	482, 1030
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	753, 856, 871
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	7 cut(s)	161, 173, 321, 493, 618, 965, 998
TaqI	TCGA	3 cut(s)	121, 214, 455
TasI	AATT	1 cut(s)	531
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	993
TfiI	GAWTC	3 cut(s)	346, 664, 778
TscAI	CASTG	7 cut(s)	283, 342, 390, 498, 736, 843, 1022
TseFI	GTSAC	2 cut(s)	110, 965
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	2 cut(s)	110, 965
TspDTI	ATGAA	5 cut(s)	169, 359, 587, 677, 911
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	7 cut(s)	283, 342, 390, 498, 736, 843, 1022
VpaK11BI	GGWCC	1 cut(s)	1020
XceI	RCATGY	2 cut(s)	369, 373
XhoI	CTCGAG	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	2 cut(s)	482, 1030
Zsp2I	ATGCAT	3 cut(s)	62, 371, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.