RLG00000019184

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0010646
Physical Location & Seq
Forward (+)
47948499 .. 47950390
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019184

Sequence Viewer

Length: 1089 bp
ATGGGGGCTGTGACCTTTCTCGAGGACAATGGGTCTATGATCCGTCCTATCCTCTCTACAGTTCCACAGACTGTCCCTTCATTTGGAAGGAGTTTGATTGCCAAAAGAATGGTCGACCAGACAATGAGTACCTCAAGTACAGATGGCAGCCCGCTTCTTGCCAGACACCCAGGTACCAATCCTCTTTTTTCTCTTCATCTTCTCTTATCGTTCTTCGACATGTTTAATGTCTGCCTTCGTGAAGAATTCATCAACCGGCCGGCTTCCACACGAGTGTTCAGTGGTAGCAGATTTTTGGAAAGATTTAGAGGGAAGCGCATACTGTTTGTAGGAGACTCACTGAGTATGAATCAATGGCAGTCCCTCACATGCACGCTTTACAAATCAGTGCAAGCCAAATACACCATAAACAGGATTGGAGGCCTCTCCATATTCAGCTTTCCAGCATATGATGTTTCGATCATGCTGTCCCGAAATGCATTTCTAGTAGATACAGTGCATATGAGAAATGGGAATGTTCTGATGCTGGACTCAATTGAGAATGGAAGTTACTGGAGAACCTTTGATGTTATCATCTTCAATACATGGCATTGGTGGCTTCATACTGGAAAAAAACAACCGTGGGCTTTTGTTCGTTATGGACTGAATAATGCCCACAAAGACATGAATCGCATGGTGGCGTATGAGAAAGCTCTAAATACATGGGCGAGATGGGTGGAGTCAAGTGTGGACACTGATAAAACAAAGATCTTCTTCCAGGGTGTTTCTCCCGATCATGTGAATCCAAGAGAATGGGGTGATAATGCAAACTCAAAGAGTTGTTTGGGAGAAACTGAACCAGTGAAGGGGACACAATATCCAGGAGGTTCACACCCAGGAGAAGTTGTTTTAGAAAGGGTATTGAGAGAAATGTCAAAGCCAGTTCACCTGCTAAACATCACCAGACTTTCACAACTAAGAATAGACAGTCACCCTTCAGCCTATGGCTTCAGCGGCCACCGTGGCATGGATTGTACCCACTGGTGTGTTCCCGGTGTTCCAGATACTTGGAACCAACTTCTATTTGCAGCACTCTTCCGGGGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

363

Amino Acids

41.11

Weight (kDa)

9.31

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 93 - 356 1.8e-85 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 936
Acc36I ACCTGC 1 cut(s) 936
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 152, 993
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 2 cut(s) 257, 994
AcsI RAATTY 1 cut(s) 245
AcuI CTGAAG 2 cut(s) 960, 973
AfaI GTAC 4 cut(s) 130, 139, 175, 1015
AfiI CCNNNNNNNGG 4 cut(s) 83, 411, 845, 1006
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 580
AhdI GACNNNNNGTC 1 cut(s) 31
AjnI CCWGG 4 cut(s) 169, 756, 859, 874
AleI CACNNNNGTG 2 cut(s) 272, 1023
AluBI AGCT 2 cut(s) 438, 692
AluI AGCT 2 cut(s) 438, 692
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 3 cut(s) 257, 421, 994
ApeKI GCWGC 2 cut(s) 147, 1067
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 318
AsuC2I CCSGG 2 cut(s) 1032, 1079
AsuHPI GGTGA 4 cut(s) 809, 917, 931, 962
AvaI CYCGRG 1 cut(s) 20
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 1085
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 2 cut(s) 159, 1079
BccI CCATC 2 cut(s) 137, 705
BciT130I CCWGG 4 cut(s) 171, 758, 861, 876
BcnI CCSGG 2 cut(s) 1032, 1079
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 1 cut(s) 485
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 936
BglI GCCNNNNNGGC 1 cut(s) 1002
BglII AGATCT 1 cut(s) 747
BisI GCNGC 3 cut(s) 148, 994, 1068
BlsI GCNGC 3 cut(s) 149, 995, 1069
Bme1390I CCNGG 6 cut(s) 171, 758, 861, 876, 1032, 1079
BmeRI GACNNNNNGTC 1 cut(s) 31
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 2 cut(s) 175, 1052
BmrFI CCNGG 6 cut(s) 171, 758, 861, 876, 1032, 1079
BmsI GCATC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 118
BpuMI CCSGG 2 cut(s) 1032, 1079
BsaJI CCNNGG 6 cut(s) 169, 620, 757, 874, 1000, 1078
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 411, 845, 1006
Bse118I RCCGGY 2 cut(s) 255, 259
Bse1I ACTGG 5 cut(s) 557, 610, 839, 920, 1025
BseBI CCWGG 4 cut(s) 171, 758, 861, 876
BseDI CCNNGG 6 cut(s) 169, 620, 757, 874, 1000, 1078
BseLI CCNNNNNNNGG 4 cut(s) 83, 411, 845, 1006
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 5 cut(s) 557, 610, 839, 920, 1025
BseX3I CGGCCG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 159, 1079
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 259, 423, 996
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 4 cut(s) 256, 260, 1032, 1078
BslFI GGGAC 4 cut(s) 59, 346, 454, 862
BslI CCNNNNNNNGG 4 cut(s) 83, 411, 845, 1006
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 4 cut(s) 59, 346, 454, 862
BsnI GGCC 3 cut(s) 259, 423, 996
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp143I GATC 4 cut(s) 39, 459, 747, 772
BspACI CCGC 2 cut(s) 152, 993
BspANI GGCC 3 cut(s) 259, 423, 996
BspCNI CTCAG 1 cut(s) 333
BspHI TCATGA 1 cut(s) 1085
BspLI GGNNCC 2 cut(s) 175, 1052
BspMI ACCTGC 1 cut(s) 936
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 173
BsrFI RCCGGY 2 cut(s) 255, 259
BsrI ACTGG 5 cut(s) 557, 610, 839, 920, 1025
BssAI RCCGGY 2 cut(s) 255, 259
BssECI CCNNGG 6 cut(s) 169, 620, 757, 874, 1000, 1078
BssMI GATC 4 cut(s) 39, 459, 747, 772
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 4 cut(s) 171, 758, 861, 876
Bst4CI ACNGT 7 cut(s) 61, 73, 324, 496, 621, 968, 1001
Bst6I CTCTTC 2 cut(s) 198, 1079
BstC8I GCNNGC 4 cut(s) 152, 261, 374, 393
BstDEI CTNAG 2 cut(s) 341, 956
BstDSI CCRYGG 2 cut(s) 620, 1000
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 4 cut(s) 42, 462, 750, 775
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 4 cut(s) 39, 459, 747, 772
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 3 cut(s) 595, 993, 1002
BstNI CCWGG 4 cut(s) 171, 758, 861, 876
BstNSI RCATGY 2 cut(s) 223, 372
BstSCI CCNGG 6 cut(s) 169, 756, 859, 874, 1030, 1077
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 2 cut(s) 159, 1079
BstX2I RGATCY 1 cut(s) 747
BstXI CCANNNNNNTGG 3 cut(s) 109, 792, 1047
BstYI RGATCY 1 cut(s) 747
BstZI CGGCCG 1 cut(s) 257
BsuRI GGCC 3 cut(s) 259, 423, 996
BtgI CCRYGG 2 cut(s) 620, 1000
BtsIMutI CAGTG 7 cut(s) 286, 338, 393, 501, 732, 846, 1018
BveI ACCTGC 1 cut(s) 936
Cac8I GCNNGC 4 cut(s) 152, 261, 374, 393
CciI TCATGA 1 cut(s) 1085
CfoI GCGC 1 cut(s) 318
Cfr10I RCCGGY 2 cut(s) 255, 259
Csp6I GTAC 4 cut(s) 129, 138, 174, 1014
CviQI GTAC 4 cut(s) 129, 138, 174, 1014
DdeI CTNAG 2 cut(s) 341, 956
DpnI GATC 4 cut(s) 41, 461, 749, 774
DpnII GATC 4 cut(s) 39, 459, 747, 772
DriI GACNNNNNGTC 1 cut(s) 31
EaeI YGGCCR 2 cut(s) 257, 994
EagI CGGCCG 1 cut(s) 257
Eam1104I CTCTTC 2 cut(s) 198, 1079
Eam1105I GACNNNNNGTC 1 cut(s) 31
EarI CTCTTC 2 cut(s) 198, 1079
EclXI CGGCCG 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 1085
Eco52I CGGCCG 1 cut(s) 257
Eco57I CTGAAG 2 cut(s) 960, 973
Eco88I CYCGRG 1 cut(s) 20
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 4 cut(s) 169, 756, 859, 874
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 1085
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 4 cut(s) 59, 346, 454, 862
FauI CCCGC 1 cut(s) 159
FauNDI CATATG 2 cut(s) 448, 501
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 148, 994, 1068
FriOI GRGCYC 1 cut(s) 1085
Fsp4HI GCNGC 3 cut(s) 148, 994, 1068
FspBI CTAG 1 cut(s) 485
GlaI GCGC 1 cut(s) 317
GluI GCNGC 3 cut(s) 148, 994, 1068
GsuI CTGGAG 1 cut(s) 574
HaeIII GGCC 3 cut(s) 259, 423, 996
HapII CCGG 4 cut(s) 256, 260, 1032, 1078
HhaI GCGC 1 cut(s) 318
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 6 cut(s) 335, 349, 530, 667, 719, 781
HpaII CCGG 4 cut(s) 256, 260, 1032, 1078
HphI GGTGA 4 cut(s) 809, 917, 931, 962
Hpy166II GTNNAC 4 cut(s) 115, 730, 869, 925
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 6 cut(s) 20, 239, 471, 770, 1040, 1086
Hpy8I GTNNAC 4 cut(s) 115, 730, 869, 925
HpyAV CCTTC 5 cut(s) 81, 87, 245, 838, 984
HpyCH4III ACNGT 7 cut(s) 61, 73, 324, 496, 621, 968, 1001
HpyCH4V TGCA 6 cut(s) 372, 391, 479, 499, 806, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 595, 993, 1002
HpyF3I CTNAG 2 cut(s) 341, 956
HspAI GCGC 1 cut(s) 316
KpnI GGTACC 1 cut(s) 177
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Kzo9I GATC 4 cut(s) 39, 459, 747, 772
Lsp1109I GCAGC 2 cut(s) 159, 1079
LweI GCATC 1 cut(s) 513
MaeI CTAG 1 cut(s) 485
MaeIII GTNAC 3 cut(s) 10, 548, 968
MalI GATC 4 cut(s) 41, 461, 749, 774
MboI GATC 4 cut(s) 39, 459, 747, 772
MboII GAAGA 8 cut(s) 185, 191, 205, 254, 568, 742, 745, 1066
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 747
MhlI GDGCHC 1 cut(s) 1085
MluCI AATT 2 cut(s) 245, 534
MlyI GAGTC 3 cut(s) 329, 524, 728
MnlI CCTC 9 cut(s) 16, 62, 142, 192, 302, 374, 413, 434, 857
Mph1103I ATGCAT 1 cut(s) 481
MroNI GCCGGC 1 cut(s) 259
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 2 cut(s) 272, 1023
MspA1I CMGCKG 1 cut(s) 993
MspI CCGG 4 cut(s) 256, 260, 1032, 1078
MspR9I CCNGG 6 cut(s) 171, 758, 861, 876, 1032, 1079
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 4 cut(s) 171, 758, 861, 876
MwoI GCNNNNNNNGC 3 cut(s) 595, 993, 1002
NaeI GCCGGC 1 cut(s) 261
NciI CCSGG 2 cut(s) 1032, 1079
NdeI CATATG 2 cut(s) 448, 501
NdeII GATC 4 cut(s) 39, 459, 747, 772
NgoMIV GCCGGC 1 cut(s) 259
NlaIV GGNNCC 2 cut(s) 175, 1052
NmuCI GTSAC 2 cut(s) 10, 968
NsiI ATGCAT 1 cut(s) 481
NspI RCATGY 2 cut(s) 223, 372
OliI CACNNNNGTG 2 cut(s) 272, 1023
PaeR7I CTCGAG 1 cut(s) 20
PagI TCATGA 1 cut(s) 1085
PaqCI CACCTGC 1 cut(s) 936
PceI AGGCCT 1 cut(s) 423
PciI ACATGT 1 cut(s) 219
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 349, 667, 781
PfoI TCCNGGA 1 cut(s) 859
PkrI GCNGC 3 cut(s) 149, 995, 1069
PleI GAGTC 3 cut(s) 329, 524, 727
PpsI GAGTC 3 cut(s) 329, 524, 727
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 4 cut(s) 169, 756, 859, 874
PspGI CCWGG 4 cut(s) 169, 756, 859, 874
PspN4I GGNNCC 2 cut(s) 175, 1052
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 4 cut(s) 130, 139, 175, 1015
RsaNI GTAC 4 cut(s) 129, 138, 174, 1014
RseI CAYNNNNRTG 2 cut(s) 272, 1023
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 3 cut(s) 148, 994, 1068
Sau3AI GATC 4 cut(s) 39, 459, 747, 772
SchI GAGTC 3 cut(s) 329, 524, 728
ScrFI CCNGG 6 cut(s) 171, 758, 861, 876, 1032, 1079
SduI GDGCHC 1 cut(s) 1085
SetI ASST 8 cut(s) 17, 134, 175, 440, 563, 694, 868, 930
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 2 cut(s) 272, 1023
SmlI CTYRAG 2 cut(s) 20, 133
SmoI CTYRAG 2 cut(s) 20, 133
Sse9I AATT 2 cut(s) 245, 534
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 2 cut(s) 152, 993
SspMI CTAG 1 cut(s) 485
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 6 cut(s) 169, 756, 859, 874, 1030, 1077
TaaI ACNGT 7 cut(s) 61, 73, 324, 496, 621, 968, 1001
TaqI TCGA 4 cut(s) 21, 114, 216, 458
TasI AATT 2 cut(s) 245, 534
TatI WGTACW 1 cut(s) 137
TauI GCSGC 1 cut(s) 996
TfiI GAWTC 3 cut(s) 349, 667, 781
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 7 cut(s) 286, 345, 393, 501, 739, 846, 1025
TseFI GTSAC 2 cut(s) 10, 968
TseI GCWGC 2 cut(s) 147, 1067
Tsp45I GTSAC 2 cut(s) 10, 968
TspDTI ATGAA 6 cut(s) 69, 185, 238, 362, 590, 680
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 7 cut(s) 286, 345, 393, 501, 739, 846, 1025
XapI RAATTY 1 cut(s) 245
XceI RCATGY 2 cut(s) 223, 372
XhoI CTCGAG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.