Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010646

Physical Location & Seq

Genomic Coordinates Reverse (-)

8660328 .. 8663763

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G107900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTGCTTCTTCTATATTTTCTGTAGCATTAATATTATTTCCTCTGTTGTACCAGATAGGGGGTGTGGTGAGTCAATACTGGGTGAGGGAACAAGTAAACAATGCTGGGTCTGGGTGTGACCTTTTCCATGGAGAATGGGTGTACGATAGGTCCTACCCTCTCTACATTTCAACAGACTGTCCCTTCATTTTGAAGGAGTTTGATTGCCAAAAGAATGGTAGACCAGATAATGAGTATCTCAAGTACAGATGGCAGCCCACTTCATGCGATTTACCAAGGTTCGATGGAAGAAGCTTTTTGGGAAGATTTAGAGGGAAGCGCATCCTATTTGTAGGGGACTCATTGAGCATGAACCAATGGCAGTCTCTCACATGTTTGCTTCATAAATCAGTGCCAGAAGCCAACTACACCTTGTCCAAGGTTGGAGGTGTCTCCACATTCAAGTTTCCAGCATACGACGTTTCGATCGTTCTGTCCCGCAATGCCTTTCTGGTAGATGTTGTGAATGAGAGCAATGGGCGTGTTCTTATGCTTGACTCAATTCAAAATGGAAGTTATTGGAGAACCTTTGATGTCTTGGTCTTCAATACATGGCATTGGTGGCTTCATTCTGGAAGAAAACAACCGTGGGCAGAAGTTCGATATGGTGTGAATAATGCACACAACGACATTGATCGCATGAAGGCCTATGAGAAAGCTTTGACGACATGGGCTAGATGGGTGGAATCTAGTGTGGATCCTAGTAAAACGAAGGTCTTCTTCCAAGGTGTTTCTCCGGATCATATGAGGTCAAGAGAATGGGGTGATAGTGCAAAATCGGAGACCTGTTTTGGACAAACAGCACCAGTGCTAGGAACACAATATCCAGGAGGCTCACATCCAGCACAAGTTATTTTAGAAAGAGTGTTGCGCACAATGTCCAAGCCAGTTTACTTGCTCAACATAACAACACTGTCACAACTCAGGAAAGATGGTCACCCTTCCTTCTATGGTTTTGGTGGCCGCCGTAGCATAGATTGCACCCACTGGTGTCTTCCCGGCATTCCGGATAGTTGGAATCAAATTCTTTTTGCTGCACTCTTCCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

365

Amino Acids

41.68

Weight (kDa)

8.93

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30900 AT2G30900
fragaria_vesca	FvH4_6g27910
malus_domestica	MD09G1233300.v1.1 MD17G1229600.v1.1 MD17G1229700.v1.1
prunus_persica	Prupe.3G107900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0131461 RchiOBHm_Chr2g0131471
rosa_laevigata	RLG00000019184
rosa_multiflora	Rmu_sc0002869.1_g000010
rosa_roxburghii	Rroxscaffold_2G00112850
rosa_rugosa	Rorug02G0296800 Rorug02G0296900 Rorug02G0297000
rosa_samantha	Rh2AG350500 Rh2BG357000 Rh2CG336100 Rh2DG374900
rosa_wichuraiana	Rw2G028440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	914
AccI	GTMKAC	1 cut(s)	223
AccIII	TCCGGA	2 cut(s)	778, 1048
AciI	CCGC	2 cut(s)	481, 1006
AclWI	GGATC	3 cut(s)	734, 747, 789
AcoI	YGGCCR	1 cut(s)	1003
AcsI	RAATTY	1 cut(s)	1065
AfaI	GTAC	3 cut(s)	53, 146, 248
AfiI	CCNNNNNNNGG	2 cut(s)	61, 854
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	174, 196, 445, 548, 589
AjnI	CCWGG	1 cut(s)	868
AloI	GAACNNNNNNTCC	2 cut(s)	850, 882
AluBI	AGCT	2 cut(s)	297, 701
AluI	AGCT	2 cut(s)	297, 701
Alw26I	GTCTC	3 cut(s)	372, 439, 818
AlwI	GGATC	3 cut(s)	734, 747, 789
Aor13HI	TCCGGA	2 cut(s)	778, 1048
AoxI	GGCC	2 cut(s)	687, 1003
ApeKI	GCWGC	3 cut(s)	5, 256, 1076
ApoI	RAATTY	1 cut(s)	1065
AseI	ATTAAT	1 cut(s)	32
Asp700I	GAANNNNTTC	1 cut(s)	758
AspLEI	GCGC	2 cut(s)	324, 915
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	1 cut(s)	1041
AsuHPI	GGTGA	4 cut(s)	82, 97, 818, 971
AvaII	GGWCC	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	739
BbsI	GAAGAC	3 cut(s)	577, 751, 1028
BbvI	GCAGC	2 cut(s)	268, 1063
BccI	CCATC	4 cut(s)	246, 281, 714, 968
BceAI	ACGGC	1 cut(s)	993
BciT130I	CCWGG	1 cut(s)	870
BcnI	CCSGG	1 cut(s)	1041
BcoDI	GTCTC	3 cut(s)	372, 439, 818
BfaI	CTAG	4 cut(s)	717, 732, 744, 854
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	4 cut(s)	6, 257, 1006, 1077
BlsI	GCNGC	4 cut(s)	7, 258, 1007, 1078
Bme1390I	CCNGG	2 cut(s)	870, 1041
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	2 cut(s)	870, 1041
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	91
BpiI	GAAGAC	3 cut(s)	577, 751, 1028
BpuEI	CTTGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	1041
BsaI	GGTCTC	1 cut(s)	818
BsaJI	CCNNGG	5 cut(s)	130, 278, 420, 629, 766
BsaWI	WCCGGW	2 cut(s)	778, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 854
Bse1I	ACTGG	4 cut(s)	86, 848, 929, 1034
Bse3DI	GCAATG	2 cut(s)	490, 523
BseAI	TCCGGA	2 cut(s)	778, 1048
BseBI	CCWGG	1 cut(s)	870
BseDI	CCNNGG	5 cut(s)	130, 278, 420, 629, 766
BseGI	GGATG	2 cut(s)	324, 880
BseLI	CCNNNNNNNGG	2 cut(s)	61, 854
BseMI	GCAATG	2 cut(s)	490, 523
BseMII	CTCAG	1 cut(s)	979
BseNI	ACTGG	4 cut(s)	86, 848, 929, 1034
BseXI	GCAGC	2 cut(s)	268, 1063
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	1062
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	689, 1005
BsiEI	CGRYCG	1 cut(s)	471
BsiSI	CCGG	3 cut(s)	779, 1041, 1049
BslFI	GGGAC	3 cut(s)	168, 353, 463
BslI	CCNNNNNNNGG	2 cut(s)	61, 854
BsmAI	GTCTC	3 cut(s)	372, 439, 818
BsmFI	GGGAC	3 cut(s)	168, 353, 463
BsmI	GAATGC	1 cut(s)	1044
BsnI	GGCC	2 cut(s)	689, 1005
Bso31I	GGTCTC	1 cut(s)	818
Bsp13I	TCCGGA	2 cut(s)	778, 1048
Bsp143I	GATC	4 cut(s)	468, 676, 739, 781
Bsp19I	CCATGG	1 cut(s)	130
BspACI	CCGC	2 cut(s)	481, 1006
BspANI	GGCC	2 cut(s)	689, 1005
BspCNI	CTCAG	1 cut(s)	978
BspEI	TCCGGA	2 cut(s)	778, 1048
BspLI	GGNNCC	1 cut(s)	741
BspPI	GGATC	3 cut(s)	734, 747, 789
BspTNI	GGTCTC	1 cut(s)	818
BsrDI	GCAATG	2 cut(s)	490, 523
BsrI	ACTGG	4 cut(s)	86, 848, 929, 1034
BssECI	CCNNGG	5 cut(s)	130, 278, 420, 629, 766
BssMI	GATC	4 cut(s)	468, 676, 739, 781
BssT1I	CCWWGG	4 cut(s)	130, 278, 420, 766
Bst2UI	CCWGG	1 cut(s)	870
Bst4CI	ACNGT	3 cut(s)	182, 630, 957
Bst6I	CTCTTC	1 cut(s)	1088
BstAPI	GCANNNNNTGC	1 cut(s)	1020
BstDEI	CTNAG	1 cut(s)	965
BstDSI	CCRYGG	2 cut(s)	130, 629
BstEII	GGTNACC	1 cut(s)	977
BstF5I	GGATG	2 cut(s)	324, 880
BstHHI	GCGC	2 cut(s)	324, 915
BstKTI	GATC	4 cut(s)	471, 679, 742, 784
BstMAI	GTCTC	3 cut(s)	372, 439, 818
BstMBI	GATC	4 cut(s)	468, 676, 739, 781
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	3 cut(s)	604, 1011, 1020
BstNI	CCWGG	1 cut(s)	870
BstNSI	RCATGY	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	977
BstSCI	CCNGG	2 cut(s)	868, 1039
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	268, 1063
BstV2I	GAAGAC	3 cut(s)	577, 751, 1028
BstX2I	RGATCY	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	739
BsuRI	GGCC	2 cut(s)	689, 1005
BtgI	CCRYGG	2 cut(s)	130, 629
BtsCI	GGATG	2 cut(s)	324, 880
BtsIMutI	CAGTG	4 cut(s)	399, 855, 953, 1027
CfoI	GCGC	2 cut(s)	324, 915
Cfr13I	GGNCC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	52, 145, 247
CviAII	CATG	7 cut(s)	131, 267, 352, 375, 594, 682, 711
CviQI	GTAC	3 cut(s)	52, 145, 247
DdeI	CTNAG	1 cut(s)	965
DpnI	GATC	4 cut(s)	470, 678, 741, 783
DpnII	GATC	4 cut(s)	468, 676, 739, 781
EaeI	YGGCCR	1 cut(s)	1003
Eam1104I	CTCTTC	1 cut(s)	1088
EarI	CTCTTC	1 cut(s)	1088
Eco130I	CCWWGG	4 cut(s)	130, 278, 420, 766
Eco147I	AGGCCT	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	818
Eco47I	GGWCC	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	977
EcoO109I	RGGNCCY	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	977
EcoRII	CCWGG	1 cut(s)	868
EcoT14I	CCWWGG	4 cut(s)	130, 278, 420, 766
ErhI	CCWWGG	4 cut(s)	130, 278, 420, 766
FaeI	CATG	7 cut(s)	134, 270, 355, 378, 597, 685, 714
FalI	AAGNNNNNCTT	2 cut(s)	746, 778
FaqI	GGGAC	3 cut(s)	168, 353, 463
FatI	CATG	7 cut(s)	130, 266, 351, 374, 593, 681, 710
FauI	CCCGC	1 cut(s)	488
FauNDI	CATATG	1 cut(s)	786
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	4 cut(s)	6, 257, 1006, 1077
FokI	GGATG	2 cut(s)	311, 867
Fsp4HI	GCNGC	4 cut(s)	6, 257, 1006, 1077
FspBI	CTAG	4 cut(s)	717, 732, 744, 854
FspI	TGCGCA	1 cut(s)	914
GlaI	GCGC	2 cut(s)	323, 914
GluI	GCNGC	4 cut(s)	6, 257, 1006, 1077
GsaI	CCCAGC	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	689, 1005
HapII	CCGG	3 cut(s)	779, 1041, 1049
HhaI	GCGC	2 cut(s)	324, 915
Hin1II	CATG	7 cut(s)	134, 270, 355, 378, 597, 685, 714
Hin6I	GCGC	2 cut(s)	322, 913
HinP1I	GCGC	2 cut(s)	322, 913
HindIII	AAGCTT	2 cut(s)	295, 699
HinfI	GANTC	5 cut(s)	73, 341, 539, 728, 1060
HpaII	CCGG	3 cut(s)	779, 1041, 1049
HphI	GGTGA	4 cut(s)	82, 97, 818, 971
Hpy166II	GTNNAC	4 cut(s)	100, 145, 224, 934
Hpy188I	TCNGA	1 cut(s)	823
Hpy188III	TCNNGA	5 cut(s)	615, 779, 795, 967, 1049
Hpy8I	GTNNAC	4 cut(s)	100, 145, 224, 934
Hpy99I	CGWCG	1 cut(s)	464
HpyAV	CCTTC	6 cut(s)	190, 196, 679, 748, 993, 997
HpyCH4III	ACNGT	3 cut(s)	182, 630, 957
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	4 cut(s)	662, 815, 1023, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	604, 1011, 1020
HpyF3I	CTNAG	1 cut(s)	965
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	7 cut(s)	134, 270, 355, 378, 597, 685, 714
HspAI	GCGC	2 cut(s)	322, 913
Kpn2I	TCCGGA	2 cut(s)	778, 1048
Kzo9I	GATC	4 cut(s)	468, 676, 739, 781
Lsp1109I	GCAGC	2 cut(s)	268, 1063
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	4 cut(s)	717, 732, 744, 854
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	119, 957, 977
MalI	GATC	4 cut(s)	470, 678, 741, 783
MboI	GATC	4 cut(s)	468, 676, 739, 781
MboII	GAAGA	9 cut(s)	3, 303, 318, 577, 630, 751, 754, 1028, 1075
MflI	RGATCY	1 cut(s)	739
MluCI	AATT	2 cut(s)	543, 1065
MlyI	GAGTC	3 cut(s)	82, 335, 533
MmeI	TCCRAC	2 cut(s)	406, 1037
MnlI	CCTC	7 cut(s)	54, 81, 171, 308, 422, 783, 866
MroI	TCCGGA	2 cut(s)	778, 1048
MroXI	GAANNNNTTC	1 cut(s)	758
MseI	TTAA	1 cut(s)	32
MspI	CCGG	3 cut(s)	779, 1041, 1049
MspR9I	CCNGG	2 cut(s)	870, 1041
Mva1269I	GAATGC	1 cut(s)	1044
MvaI	CCWGG	1 cut(s)	870
MwoI	GCNNNNNNNGC	3 cut(s)	604, 1011, 1020
NciI	CCSGG	1 cut(s)	1041
NcoI	CCATGG	1 cut(s)	130
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	4 cut(s)	468, 676, 739, 781
NlaIII	CATG	7 cut(s)	134, 270, 355, 378, 597, 685, 714
NlaIV	GGNNCC	1 cut(s)	741
NmuCI	GTSAC	3 cut(s)	119, 957, 977
NsbI	TGCGCA	1 cut(s)	914
NspI	RCATGY	1 cut(s)	378
PceI	AGGCCT	1 cut(s)	689
PciI	ACATGT	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	1044
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	728, 1060
PfoI	TCCNGGA	1 cut(s)	868
PkrI	GCNGC	4 cut(s)	7, 258, 1007, 1078
Ple19I	CGATCG	1 cut(s)	471
PleI	GAGTC	3 cut(s)	81, 335, 533
PpsI	GAGTC	3 cut(s)	81, 335, 533
PpuMI	RGGWCCY	1 cut(s)	153
PscI	ACATGT	1 cut(s)	374
PshBI	ATTAAT	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	868
PspEI	GGTNACC	1 cut(s)	977
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	868
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	739
PvuI	CGATCG	1 cut(s)	471
RsaI	GTAC	3 cut(s)	53, 146, 248
RsaNI	GTAC	3 cut(s)	52, 145, 247
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	4 cut(s)	6, 257, 1006, 1077
Sau3AI	GATC	4 cut(s)	468, 676, 739, 781
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	3 cut(s)	82, 335, 533
ScrFI	CCNGG	2 cut(s)	870, 1041
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	2 cut(s)	543, 1065
SseBI	AGGCCT	1 cut(s)	689
SsiI	CCGC	2 cut(s)	481, 1006
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	4 cut(s)	717, 732, 744, 854
StuI	AGGCCT	1 cut(s)	689
StyD4I	CCNGG	2 cut(s)	868, 1039
StyI	CCWWGG	4 cut(s)	130, 278, 420, 766
TaaI	ACNGT	3 cut(s)	182, 630, 957
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	3 cut(s)	285, 467, 643
TasI	AATT	2 cut(s)	543, 1065
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	1008
TfiI	GAWTC	2 cut(s)	728, 1060
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	4 cut(s)	399, 855, 960, 1034
TseFI	GTSAC	3 cut(s)	119, 957, 977
TseI	GCWGC	3 cut(s)	5, 256, 1076
Tsp45I	GTSAC	3 cut(s)	119, 957, 977
TspDTI	ATGAA	6 cut(s)	178, 255, 368, 374, 599, 698
TspRI	CASTG	4 cut(s)	399, 855, 960, 1034
VpaK11BI	GGWCC	1 cut(s)	153
VspI	ATTAAT	1 cut(s)	32
XapI	RAATTY	1 cut(s)	1065
XceI	RCATGY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	4 cut(s)	717, 732, 744, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.