Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004513

Physical Location & Seq

Genomic Coordinates Forward (+)

13293953 .. 13295410

Gene Structure 1458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCTTTCAGAGGACTTAGCAGGCCAAATGCAATATCTGGAATGGGTGTTGCAGATGAGAGCAAAACCACATTTCTAGAGCTTCAAAGGAAAAAAACTCATCGCTATGTGGTCTTCAAGATTGATGAATCCAAAAAAGAAGTTGTTGTTGAGAAAACTGGAAATCCTACAGAGAGCTACGATGATTTCTTAGCTTCACTTCCTGATAATGACTGCAGATACGCTGTTTATGACTTTGATTTCGTTACTTCTGAGAATTGTCAAAAGAGCAAAATCTTCTTCTTTGCTTGGTCTCCTTCGACCTCTGGAATTCGAGCCAAGGTGCTTTACTCGACTTCTAAAGACCAGTTAAGTAGGGAGCTTCAAGGGATTCACTATGAGATTCAAGCTACTGATCCTACTGAGGTTGATCTTGAAGTGTTACGCGAACGAGCGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

146

Amino Acids

16.71

Weight (kDa)

5.46

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cofilin_ADF	PF00241	14 - 145	2.9e-41	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31200
fragaria_vesca	FvH4_2g21520 FvH4_4g03580
malus_domestica	MD05G1197900.v1.1 MD10G1184500.v1.1
prunus_persica	Prupe.1G039000_v2.0.a1 Prupe.8G224300_v2.0.a1 Prupe.8G224300_v2.0.a1
pyrus_communis	pycom05g18480 pycom10g15980
rosa_chinensis	RchiOBHm_Chr4g0392951 RchiOBHm_Chr6g0288181
rosa_laevigata	RLG00000009779 RLG00000012431
rosa_multiflora	Rmu_sc0002207.1_g000009 Rmu_sc0008339.1_g000023
rosa_roxburghii	Rroxscaffold_5G00338060 Rroxscaffold_7G00180410
rosa_rugosa	Rorug03G0341500 Rorug03G0341600 Rorug06G0194800
rosa_samantha	Rh4AG045000 Rh4BG040900 Rh4CG048600 Rh4DG042600 Rh6AG305200 Rh6BG311100 Rh6CG319200 Rh6DG304300
rosa_wichuraiana	Rw0G014430 Rw4G003530 Rw6G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	426
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	309
AgsI	TTSAA	5 cut(s)	86, 118, 365, 386, 416
AluBI	AGCT	5 cut(s)	82, 177, 194, 361, 389
AluI	AGCT	5 cut(s)	82, 177, 194, 361, 389
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	389
AoxI	GGCC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	309
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
BbsI	GAAGAC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	77
BfmI	CTRYAG	2 cut(s)	168, 214
BpiI	GAAGAC	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	163, 346
BseDI	CCNNGG	1 cut(s)	318
BseMII	CTCAG	2 cut(s)	243, 393
BseNI	ACTGG	2 cut(s)	163, 346
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	394, 409
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	244, 394
BspFNI	CGCG	1 cut(s)	426
BspMAI	CTGCAG	1 cut(s)	218
BspPI	GGATC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	163, 346
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	2 cut(s)	394, 409
BssT1I	CCWWGG	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	4 cut(s)	17, 190, 252, 402
BstFNI	CGCG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	397, 412
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	394, 409
BstSFI	CTRYAG	2 cut(s)	168, 214
BstUI	CGCG	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	25
BtgZI	GCGATG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	23
CviJI	RGCY	7 cut(s)	25, 82, 177, 194, 317, 361, 389
CviKI_1	RGCY	7 cut(s)	25, 82, 177, 194, 317, 361, 389
DdeI	CTNAG	4 cut(s)	17, 190, 252, 402
DpnI	GATC	2 cut(s)	396, 411
DpnII	GATC	2 cut(s)	394, 409
Eco130I	CCWWGG	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	297
EcoRI	GAATTC	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaiI	YATR	3 cut(s)	108, 231, 378
FspBI	CTAG	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	128, 370, 382
Hpy188I	TCNGA	2 cut(s)	11, 253
Hpy188III	TCNNGA	6 cut(s)	39, 77, 118, 203, 306, 413
HpyAV	CCTTC	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	32, 53, 216
HpyF3I	CTNAG	4 cut(s)	17, 190, 252, 402
Kzo9I	GATC	2 cut(s)	394, 409
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	6 cut(s)	7, 24, 144, 216, 291, 359
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	2 cut(s)	244, 420
MalI	GATC	2 cut(s)	396, 411
MboI	GATC	2 cut(s)	394, 409
MboII	GAAGA	3 cut(s)	106, 268, 271
MluCI	AATT	2 cut(s)	256, 309
MnlI	CCTC	3 cut(s)	5, 313, 397
MseI	TTAA	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	426
NdeII	GATC	2 cut(s)	394, 409
PfeI	GAWTC	3 cut(s)	128, 370, 382
PstI	CTGCAG	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	394, 409
SetI	ASST	8 cut(s)	84, 179, 196, 305, 324, 363, 391, 408
SfcI	CTRYAG	2 cut(s)	168, 214
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	256, 309
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	3 cut(s)	299, 313, 332
TasI	AATT	2 cut(s)	256, 309
TfiI	GAWTC	3 cut(s)	128, 370, 382
Tru1I	TTAA	1 cut(s)	350
Tru9I	TTAA	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	141
XapI	RAATTY	1 cut(s)	309
XbaI	TCTAGA	1 cut(s)	76
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.