Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004513

Physical Location & Seq

Genomic Coordinates Forward (+)

21393699 .. 21394934

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g18480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCTCTCAGAGGGCTCAGTCGGCCAAATGCTTCATGTGCCATGGGGGTTTCTGATGAGAGCAAGAACACTTTCATGGAGCTCCAGAGGAAGAAGGTCCACAGCTATGTGATATTCAAGGTTGATGAGAAGAAGAGGGAGGTTGTAGTTGAAAAAATTGGCGGTCCGGCGGAGAGCTATGATGATTTTGTGGCAGCTTTGCCTGATAATGATTGTCGATATGCAGTATACGACTTCGATTTCGGAACTTCTGATAACTGTCAAAAGAGCAAGATCTCCTTCATCGCATGGTCCCCTTCAACCTCTCGAATCCGTGAGAAGATGCTCTATGCCACATGTAAAGACAGGTTTAGGAGGGAGCTGGACGGTATCCACGACGAGATTCAGGCTACTGACCCAACAGAGATGGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

139

Amino Acids

15.79

Weight (kDa)

5.44

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31200
fragaria_vesca	FvH4_2g21520 FvH4_4g03580
malus_domestica	MD05G1197900.v1.1 MD10G1184500.v1.1
prunus_persica	Prupe.1G039000_v2.0.a1 Prupe.8G224300_v2.0.a1 Prupe.8G224300_v2.0.a1
pyrus_communis	pycom05g18480 pycom10g15980
rosa_chinensis	RchiOBHm_Chr4g0392951 RchiOBHm_Chr6g0288181
rosa_laevigata	RLG00000009779 RLG00000012431
rosa_multiflora	Rmu_sc0002207.1_g000009 Rmu_sc0008339.1_g000023
rosa_roxburghii	Rroxscaffold_5G00338060 Rroxscaffold_7G00180410
rosa_rugosa	Rorug03G0341500 Rorug03G0341600 Rorug06G0194800
rosa_samantha	Rh4AG045000 Rh4BG040900 Rh4CG048600 Rh4DG042600 Rh6AG305200 Rh6BG311100 Rh6CG319200 Rh6DG304300
rosa_wichuraiana	Rw0G014430 Rw4G003530 Rw6G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	162, 170
AcoI	YGGCCR	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	118, 152, 300
AluBI	AGCT	5 cut(s)	82, 105, 177, 197, 361
AluI	AGCT	5 cut(s)	82, 105, 177, 197, 361
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	9
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	194
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	97, 164, 291
AvaII	GGWCC	3 cut(s)	97, 164, 291
BanII	GRGCYC	2 cut(s)	18, 84
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme18I	GGWCC	3 cut(s)	97, 164, 291
BmgT120I	GGNCC	3 cut(s)	97, 164, 291
BmiI	GGNNCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	22, 31
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	18, 84
Bsp143I	GATC	2 cut(s)	273, 409
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	2 cut(s)	162, 170
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	2 cut(s)	21, 30
BspLI	GGNNCC	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	273, 409
BssNAI	GTATAC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	42
Bst1107I	GTATAC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	260, 368
Bst6I	CTCTTC	1 cut(s)	128
BstDEI	CTNAG	2 cut(s)	8, 17
BstDSI	CCRYGG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	276, 412
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	273, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 38
BstNSI	RCATGY	1 cut(s)	339
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	273, 409
BstYI	RGATCY	2 cut(s)	273, 409
BstZ17I	GTATAC	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	42
BtgZI	GCGATG	1 cut(s)	268
Cfr13I	GGNCC	3 cut(s)	97, 164, 291
CpoI	CGGWCCG	1 cut(s)	164
CspI	CGGWCCG	1 cut(s)	164
CviAII	CATG	5 cut(s)	36, 43, 76, 288, 336
CviJI	RGCY	8 cut(s)	16, 25, 82, 105, 177, 197, 361, 389
CviKI_1	RGCY	8 cut(s)	16, 25, 82, 105, 177, 197, 361, 389
DdeI	CTNAG	2 cut(s)	8, 17
DpnI	GATC	2 cut(s)	275, 411
DpnII	GATC	2 cut(s)	273, 409
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	2 cut(s)	18, 84
Eco47I	GGWCC	3 cut(s)	97, 164, 291
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	2 cut(s)	18, 84
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	5 cut(s)	39, 46, 79, 291, 339
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	5 cut(s)	35, 42, 75, 287, 335
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	1 cut(s)	195
FriOI	GRGCYC	2 cut(s)	18, 84
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	5 cut(s)	39, 46, 79, 291, 339
HinfI	GANTC	2 cut(s)	309, 382
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	100, 229
Hpy188I	TCNGA	4 cut(s)	11, 55, 245, 253
Hpy188III	TCNNGA	2 cut(s)	85, 306
Hpy8I	GTNNAC	2 cut(s)	100, 229
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	3 cut(s)	88, 289, 306
HpyCH4III	ACNGT	2 cut(s)	260, 368
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 38
HpyF3I	CTNAG	2 cut(s)	8, 17
Hsp92II	CATG	5 cut(s)	39, 46, 79, 291, 339
Kzo9I	GATC	2 cut(s)	273, 409
LmnI	GCTCC	3 cut(s)	79, 87, 358
LpnPI	CCDG	6 cut(s)	98, 180, 216, 331, 347, 371
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	312
MalI	GATC	2 cut(s)	275, 411
MboI	GATC	2 cut(s)	273, 409
MboII	GAAGA	4 cut(s)	103, 142, 145, 331
MflI	RGATCY	2 cut(s)	273, 409
MhlI	GDGCHC	2 cut(s)	18, 84
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	6 cut(s)	5, 81, 129, 133, 313, 348
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	74, 105
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	22, 38
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	2 cut(s)	273, 409
NlaIII	CATG	5 cut(s)	39, 46, 79, 291, 339
NlaIV	GGNNCC	1 cut(s)	293
NspI	RCATGY	1 cut(s)	339
PciI	ACATGT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	309, 382
PkrI	GCNGC	1 cut(s)	196
PscI	ACATGT	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	97, 164, 291
PsuI	RGATCY	2 cut(s)	273, 409
RseI	CAYNNNNRTG	2 cut(s)	74, 105
Rsr2I	CGGWCCG	1 cut(s)	164
RsrII	CGGWCCG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	273, 409
Sau96I	GGNCC	3 cut(s)	97, 164, 291
SduI	GDGCHC	2 cut(s)	18, 84
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	3 cut(s)	97, 164, 291
SmiMI	CAYNNNNRTG	2 cut(s)	74, 105
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	162, 170
SstI	GAGCTC	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	260, 368
TaqI	TCGA	3 cut(s)	217, 237, 307
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	309, 382
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	3 cut(s)	24, 64, 271
TspGWI	ACGGA	1 cut(s)	302
VpaK11BI	GGWCC	3 cut(s)	97, 164, 291
XceI	RCATGY	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.