Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004513

Physical Location & Seq

Genomic Coordinates Reverse (-)

2754400 .. 2756652

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTTTCAGAGGAGGAAATGCTTCATCAGGCATGGGTGTTGCTGAGCACTGCAAAAACACGTTCTTGGAACTGCAGAGGAAGAAGGCTTATCGCTACGTGATTTTTAAAATTGACGAGAAGAAAAAAGAGGTTGTGGTTGAAAAGACTGGAGGTCCAGCTGAAAGCTATGATGATTTCACTGCTTCAATGCCTGAGAATGACTGCCGCTATGCAATTTATGACTTTGATTTTGTCACTTCAGAGAATTGTCAAAAGAGCAAGATCTTTTTCATTGCATGGTCACCCTCTGTGTCACGGATCCGTGCCAAGATGCTGTATGCAACATCAAAGGACAGGTTCAGGAGGGAGCTGGATGGTATCCATTATGAAATCCAGGCAACTGACCCAACCGAGATGGAACTAGAAGTCCTTAGGGACCGTGCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

144

Amino Acids

16.57

Weight (kDa)

6.83

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31200
fragaria_vesca	FvH4_2g21520 FvH4_4g03580
malus_domestica	MD05G1197900.v1.1 MD10G1184500.v1.1
prunus_persica	Prupe.1G039000_v2.0.a1 Prupe.8G224300_v2.0.a1 Prupe.8G224300_v2.0.a1
pyrus_communis	pycom05g18480 pycom10g15980
rosa_chinensis	RchiOBHm_Chr4g0392951 RchiOBHm_Chr6g0288181
rosa_laevigata	RLG00000009779 RLG00000012431
rosa_multiflora	Rmu_sc0002207.1_g000009 Rmu_sc0008339.1_g000023
rosa_roxburghii	Rroxscaffold_5G00338060 Rroxscaffold_7G00180410
rosa_rugosa	Rorug03G0341500 Rorug03G0341600 Rorug06G0194800
rosa_samantha	Rh4AG045000 Rh4BG040900 Rh4CG048600 Rh4DG042600 Rh6AG305200 Rh6BG311100 Rh6CG319200 Rh6DG304300
rosa_wichuraiana	Rw0G014430 Rw4G003530 Rw6G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	295, 308
AcuI	CTGAAG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	2 cut(s)	143, 189
AhdI	GACNNNNNGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	375
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	3 cut(s)	161, 168, 352
AluI	AGCT	3 cut(s)	161, 168, 352
Alw21I	GWGCWC	2 cut(s)	51, 427
Alw44I	GTGCAC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	295, 308
ApaLI	GTGCAC	1 cut(s)	423
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	1 cut(s)	22
AspS9I	GGNCC	2 cut(s)	155, 418
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	2 cut(s)	155, 418
AxyI	CCTNAGG	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	51, 427
BccI	CCATC	2 cut(s)	350, 391
BciT130I	CCWGG	1 cut(s)	377
BciVI	GTATCC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	264
BisI	GCNGC	1 cut(s)	208
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	2 cut(s)	155, 418
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	155, 418
BmiI	GGNNCC	2 cut(s)	302, 419
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	45
BsaAI	YACGTR	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	154
Bse21I	CCTNAGG	1 cut(s)	413
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	36, 186
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	51, 427
Bsp1286I	GDGCHC	2 cut(s)	51, 427
Bsp143I	GATC	2 cut(s)	264, 300
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	37, 187
BspLI	GGNNCC	2 cut(s)	302, 419
BspMAI	CTGCAG	1 cut(s)	78
BspPI	GGATC	2 cut(s)	295, 308
BsrDI	GCAATG	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	264, 300
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	45, 195, 413
BstEII	GGTNACC	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	2 cut(s)	267, 303
BstMBI	GATC	2 cut(s)	264, 300
BstNI	CCWGG	1 cut(s)	377
BstPI	GGTNACC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	264, 300
BstYI	RGATCY	2 cut(s)	264, 300
Bsu36I	CCTNAGG	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	2 cut(s)	49, 180
BtsIMutI	CAGTG	3 cut(s)	49, 180, 427
Cfr13I	GGNCC	2 cut(s)	155, 418
CviAII	CATG	2 cut(s)	34, 279
CviJI	RGCY	5 cut(s)	5, 89, 161, 168, 352
CviKI_1	RGCY	5 cut(s)	5, 89, 161, 168, 352
DdeI	CTNAG	3 cut(s)	45, 195, 413
DpnI	GATC	2 cut(s)	266, 302
DpnII	GATC	2 cut(s)	264, 300
DraI	TTTAAA	1 cut(s)	109
DriI	GACNNNNNGTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	155, 418
Eco57I	CTGAAG	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	413
Eco91I	GGTNACC	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	375
FaeI	CATG	2 cut(s)	37, 282
FaiI	YATR	7 cut(s)	35, 171, 213, 222, 280, 321, 369
FatI	CATG	2 cut(s)	33, 278
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	171
Hin1II	CATG	2 cut(s)	37, 282
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	2 cut(s)	11, 244
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4IV	ACGT	2 cut(s)	62, 99
HpyCH4V	TGCA	6 cut(s)	54, 76, 215, 278, 323, 425
HpyF3I	CTNAG	3 cut(s)	45, 195, 413
HpySE526I	ACGT	2 cut(s)	62, 99
Hsp92II	CATG	2 cut(s)	37, 282
Kzo9I	GATC	2 cut(s)	264, 300
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	15, 135, 171, 207, 322, 328, 338, 362, 389
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	404
MaeII	ACGT	2 cut(s)	62, 99
MaeIII	GTNAC	3 cut(s)	235, 282, 294
MalI	GATC	2 cut(s)	266, 302
MboI	GATC	2 cut(s)	264, 300
MboII	GAAGA	2 cut(s)	94, 133
MflI	RGATCY	2 cut(s)	264, 300
MhlI	GDGCHC	2 cut(s)	51, 427
MluCI	AATT	3 cut(s)	111, 216, 247
MnlI	CCTC	7 cut(s)	5, 8, 72, 124, 146, 298, 339
MroXI	GAANNNNTTC	1 cut(s)	22
MseI	TTAA	1 cut(s)	108
MspA1I	CMGCKG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	264, 300
NlaIII	CATG	2 cut(s)	37, 282
NlaIV	GGNNCC	2 cut(s)	302, 419
NmuCI	GTSAC	3 cut(s)	235, 282, 294
PdmI	GAANNNNTTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	375
PspEI	GGTNACC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	302, 419
PspPI	GGNCC	2 cut(s)	155, 418
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	264, 300
PvuII	CAGCTG	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	264, 300
Sau96I	GGNCC	2 cut(s)	155, 418
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	51, 427
SetI	ASST	8 cut(s)	65, 102, 135, 157, 163, 170, 341, 354
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	1 cut(s)	74
SinI	GGWCC	2 cut(s)	155, 418
Sse9I	AATT	3 cut(s)	111, 216, 247
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	422
TaiI	ACGT	2 cut(s)	65, 102
TasI	AATT	3 cut(s)	111, 216, 247
TauI	GCSGC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	56, 187
TseFI	GTSAC	3 cut(s)	235, 282, 294
Tsp45I	GTSAC	3 cut(s)	235, 282, 294
TspDTI	ATGAA	3 cut(s)	15, 262, 384
TspGWI	ACGGA	2 cut(s)	293, 313
TspRI	CASTG	2 cut(s)	56, 187
VneI	GTGCAC	1 cut(s)	423
VpaK11BI	GGWCC	2 cut(s)	155, 418
XmnI	GAANNNNTTC	1 cut(s)	22
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.