Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002207.1

Orthogroup ID

OG0004513

Physical Location & Seq

Genomic Coordinates Forward (+)

33963 .. 35249

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002207.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgtctttcagagggctcagtcggccgaatgcttcgtgtgccatggctgcggctgagcacagcaagaacacttttatggaactgcagaggaagaaggttcaccgctatgtgatatttagggtggatgagaagaaaaaggaggttgtggttgagaagattggtggtccggctgagagttatgatgattttgtggcggctttgccggagaatgattgccgttatgcagtatatgactttgattttgtaacctctgataactgtcaaaagagcaagatcttcttcattgcttggtccccttcaacctctcggatccgtgccaagatgctgtatgccacatcgaaagaccaatttaggcgggagctggatggtatccactacgagattcaagctactgacccaacagagatggatcttgaggtgatcaaagagcgtgcgcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

146

Amino Acids

16.91

Weight (kDa)

6.9

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31200
fragaria_vesca	FvH4_2g21520 FvH4_4g03580
malus_domestica	MD05G1197900.v1.1 MD10G1184500.v1.1
prunus_persica	Prupe.1G039000_v2.0.a1 Prupe.8G224300_v2.0.a1 Prupe.8G224300_v2.0.a1
pyrus_communis	pycom05g18480 pycom10g15980
rosa_chinensis	RchiOBHm_Chr4g0392951 RchiOBHm_Chr6g0288181
rosa_laevigata	RLG00000009779 RLG00000012431
rosa_multiflora	Rmu_sc0002207.1_g000009 Rmu_sc0008339.1_g000023
rosa_roxburghii	Rroxscaffold_5G00338060 Rroxscaffold_7G00180410
rosa_rugosa	Rorug03G0341500 Rorug03G0341600 Rorug06G0194800
rosa_samantha	Rh4AG045000 Rh4BG040900 Rh4CG048600 Rh4DG042600 Rh6AG305200 Rh6BG311100 Rh6CG319200 Rh6DG304300
rosa_wichuraiana	Rw0G014430 Rw4G003530 Rw6G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	435
AciI	CCGC	4 cut(s)	50, 103, 194, 355
AclWI	GGATC	3 cut(s)	304, 317, 417
AcoI	YGGCCR	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	300, 386
AluBI	AGCT	2 cut(s)	361, 389
AluI	AGCT	2 cut(s)	361, 389
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	3 cut(s)	304, 317, 417
AoxI	GGCC	1 cut(s)	23
ApeKI	GCWGC	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	224, 256
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	2 cut(s)	164, 291
AsuHPI	GGTGA	2 cut(s)	92, 430
AvaII	GGWCC	2 cut(s)	164, 291
BamHI	GGATCC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	359, 400
BceAI	ACGGC	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	380
BclI	TGATCA	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	48, 51, 195
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	3 cut(s)	49, 52, 196
Bme18I	GGWCC	2 cut(s)	164, 291
BmgT120I	GGNCC	2 cut(s)	164, 291
BmiI	GGNNCC	2 cut(s)	293, 311
BmsI	GCATC	1 cut(s)	312
Bpu1102I	GCTNAGC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	130, 370
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	31, 45, 162
BseX3I	CGGCCG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	167, 203
BslFI	GGGAC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	18, 60
Bsp143I	GATC	4 cut(s)	273, 309, 409, 420
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	4 cut(s)	50, 103, 194, 355
BspANI	GGCC	1 cut(s)	25
BspCNI	CTCAG	3 cut(s)	30, 46, 163
BspLI	GGNNCC	2 cut(s)	293, 311
BspMAI	CTGCAG	1 cut(s)	87
BspPI	GGATC	3 cut(s)	304, 317, 417
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	4 cut(s)	273, 309, 409, 420
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	17, 54, 171
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	130, 370
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	4 cut(s)	276, 312, 412, 423
BstMBI	GATC	4 cut(s)	273, 309, 409, 420
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 38, 47
BstSFI	CTRYAG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	3 cut(s)	273, 309, 409
BstYI	RGATCY	3 cut(s)	273, 309, 409
BstZI	CGGCCG	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	25
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	130, 370
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	432
CfoI	GCGC	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	164, 291
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	8 cut(s)	16, 25, 47, 53, 170, 197, 361, 389
CviKI_1	RGCY	8 cut(s)	16, 25, 47, 53, 170, 197, 361, 389
DdeI	CTNAG	3 cut(s)	17, 54, 171
DpnI	GATC	4 cut(s)	275, 311, 411, 422
DpnII	GATC	4 cut(s)	273, 309, 409, 420
EaeI	YGGCCR	1 cut(s)	23
EagI	CGGCCG	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	164, 291
Eco52I	CGGCCG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	46
FaiI	YATR	8 cut(s)	44, 77, 108, 180, 222, 229, 231, 330
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	48, 51, 195
FokI	GGATG	2 cut(s)	137, 377
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	48, 51, 195
FspAI	RTGCGCAY	1 cut(s)	435
FspI	TGCGCA	1 cut(s)	435
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	3 cut(s)	48, 51, 195
HaeIII	GGCC	1 cut(s)	25
HapII	CCGG	2 cut(s)	167, 203
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	167, 203
HphI	GGTGA	2 cut(s)	92, 430
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	11, 253, 309
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	88, 306
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	2 cut(s)	85, 224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 38, 47
HpyF3I	CTNAG	3 cut(s)	17, 54, 171
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	273, 309, 409, 420
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	180, 216, 347
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	275, 311, 411, 422
MboI	GATC	4 cut(s)	273, 309, 409, 420
MboII	GAAGA	5 cut(s)	103, 142, 166, 268, 271
MflI	RGATCY	3 cut(s)	273, 309, 409
MhlI	GDGCHC	2 cut(s)	18, 60
MluCI	AATT	1 cut(s)	347
MnlI	CCTC	6 cut(s)	5, 81, 133, 259, 313, 409
MslI	CAYNNNNRTG	2 cut(s)	74, 105
MspI	CCGG	2 cut(s)	167, 203
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	22, 38, 47
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	4 cut(s)	273, 309, 409, 420
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	293, 311
NsbI	TGCGCA	1 cut(s)	435
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	49, 52, 196
PspN4I	GGNNCC	2 cut(s)	293, 311
PspPI	GGNCC	2 cut(s)	164, 291
PstI	CTGCAG	1 cut(s)	87
PsuI	RGATCY	3 cut(s)	273, 309, 409
RseI	CAYNNNNRTG	2 cut(s)	74, 105
SatI	GCNGC	3 cut(s)	48, 51, 195
Sau3AI	GATC	4 cut(s)	273, 309, 409, 420
Sau96I	GGNCC	2 cut(s)	164, 291
SduI	GDGCHC	2 cut(s)	18, 60
SetI	ASST	7 cut(s)	99, 144, 251, 305, 363, 391, 420
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	164, 291
SmiMI	CAYNNNNRTG	2 cut(s)	74, 105
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	347
SsiI	CCGC	4 cut(s)	50, 103, 194, 355
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	347
TauI	GCSGC	2 cut(s)	53, 197
TfiI	GAWTC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	271
TspGWI	ACGGA	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	164, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.