Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004513

Physical Location & Seq

Genomic Coordinates Forward (+)

19128618 .. 19130195

Gene Structure 1578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCTTTCAGAGGGCTCGGTCGGGGCCAAACAGAGGATAGATGTCTAGGCAAACCAAATGCTTCATGTGCCATGGGGGTTTCTGATGAGAGCAAGAACACTTTCATGGAGCTGCAGAGGAAGAAGGTTCACCGCTATGTGATATTCAAGGTTGATGAGAAGAAGAGGGAGGTTGTAGTTGAAAAGATTGGTGGTCCGGCGGAGAGCTATGATGATTTTGCGGCAGCTTTGCCTGATAATGATTGTCGATATGCCGTATATGACTTTGATTTCGTAACTTCTGAGAACTGTCAAAAGAGCAAGATCTTCTTCATCGCATGGTCCCCTTCGACCGCTCGAATCCGTGCAAAGATGCTCTACGCCACATCTAAAGACAGGTTTAGGAGGGAGCTAGATGGTATCCACTACGAGATTCAGGCTACTGACCCGACAGAGATGGATCTTGAGGTGCTCAGAGACCGTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006996 GO:0007010 GO:0007015 GO:0008150 GO:0008154 GO:0009987 GO:0016043 GO:0022411 GO:0030029 GO:0030036 GO:0030042 GO:0032984 GO:0043624 GO:0043933 GO:0051261 GO:0071840 GO:0097435

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF

Protein Analysis

157

Amino Acids

17.98

Weight (kDa)

6.83

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004513)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31200
fragaria_vesca	FvH4_2g21520 FvH4_4g03580
malus_domestica	MD05G1197900.v1.1 MD10G1184500.v1.1
prunus_persica	Prupe.1G039000_v2.0.a1 Prupe.8G224300_v2.0.a1 Prupe.8G224300_v2.0.a1
pyrus_communis	pycom05g18480 pycom10g15980
rosa_chinensis	RchiOBHm_Chr4g0392951 RchiOBHm_Chr6g0288181
rosa_laevigata	RLG00000009779 RLG00000012431
rosa_multiflora	Rmu_sc0002207.1_g000009 Rmu_sc0008339.1_g000023
rosa_roxburghii	Rroxscaffold_5G00338060 Rroxscaffold_7G00180410
rosa_rugosa	Rorug03G0341500 Rorug03G0341600 Rorug06G0194800
rosa_samantha	Rh4AG045000 Rh4BG040900 Rh4CG048600 Rh4DG042600 Rh6AG305200 Rh6BG311100 Rh6CG319200 Rh6DG304300
rosa_wichuraiana	Rw0G014430 Rw4G003530 Rw6G026420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	335
AciI	CCGC	4 cut(s)	133, 200, 221, 333
AclWI	GGATC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	148, 182
AluBI	AGCT	4 cut(s)	112, 207, 227, 391
AluI	AGCT	4 cut(s)	112, 207, 227, 391
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	447
AoxI	GGCC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	112, 224
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	3 cut(s)	25, 194, 321
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	2 cut(s)	194, 321
BaeGI	GKGCMC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	99, 236
BccI	CCATC	2 cut(s)	389, 430
BceAI	ACGGC	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	410
BcoDI	GTCTC	1 cut(s)	450
BfaI	CTAG	2 cut(s)	47, 392
BfmI	CTRYAG	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	3 cut(s)	113, 222, 225
BlsI	GCNGC	3 cut(s)	114, 223, 226
Bme18I	GGWCC	2 cut(s)	194, 321
BmgT120I	GGNCC	3 cut(s)	25, 194, 321
BmiI	GGNNCC	2 cut(s)	26, 323
BmsI	GCATC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	464
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	2 cut(s)	273, 466
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	99, 236
Bsh1285I	CGRYCG	2 cut(s)	22, 333
BshFI	GGCC	1 cut(s)	27
BsiEI	CGRYCG	2 cut(s)	22, 333
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	27
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	18, 453, 466
Bsp143I	GATC	2 cut(s)	303, 439
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	4 cut(s)	133, 200, 221, 333
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	2 cut(s)	274, 465
BspLI	GGNNCC	2 cut(s)	26, 323
BspMAI	CTGCAG	1 cut(s)	117
BspPI	GGATC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	450
BsrBI	CCGCTC	1 cut(s)	335
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	2 cut(s)	303, 439
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	290, 461
Bst6I	CTCTTC	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	282, 452
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	306, 442
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	303, 439
BstMCI	CGRYCG	2 cut(s)	22, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	99, 236
BstX2I	RGATCY	2 cut(s)	303, 439
BstYI	RGATCY	2 cut(s)	303, 439
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	298
Cfr13I	GGNCC	3 cut(s)	25, 194, 321
CviAII	CATG	4 cut(s)	66, 73, 106, 318
CviJI	RGCY	7 cut(s)	16, 27, 112, 207, 227, 391, 419
CviKI_1	RGCY	7 cut(s)	16, 27, 112, 207, 227, 391, 419
DdeI	CTNAG	2 cut(s)	282, 452
DpnI	GATC	2 cut(s)	305, 441
DpnII	GATC	2 cut(s)	303, 439
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	194, 321
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	69, 76, 109, 321
FaiI	YATR	9 cut(s)	67, 74, 107, 138, 210, 252, 259, 261, 319
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	65, 72, 105, 317
Fnu4HI	GCNGC	3 cut(s)	113, 222, 225
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	3 cut(s)	113, 222, 225
FspBI	CTAG	2 cut(s)	47, 392
GluI	GCNGC	3 cut(s)	113, 222, 225
HaeIII	GGCC	1 cut(s)	27
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	4 cut(s)	69, 76, 109, 321
HinfI	GANTC	2 cut(s)	339, 412
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	11, 85, 283, 455
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	118, 336
HpyCH4III	ACNGT	2 cut(s)	290, 461
HpyCH4V	TGCA	2 cut(s)	115, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	282, 452
Hsp92II	CATG	4 cut(s)	69, 76, 109, 321
Kzo9I	GATC	2 cut(s)	303, 439
LmnI	GCTCC	2 cut(s)	109, 388
LpnPI	CCDG	4 cut(s)	210, 246, 361, 401
Lsp1109I	GCAGC	2 cut(s)	99, 236
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	47, 392
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	2 cut(s)	305, 441
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	2 cut(s)	303, 439
MboII	GAAGA	5 cut(s)	133, 172, 175, 298, 301
MflI	RGATCY	2 cut(s)	303, 439
MhlI	GDGCHC	3 cut(s)	18, 453, 466
MnlI	CCTC	7 cut(s)	5, 28, 111, 159, 163, 378, 439
MroXI	GAANNNNTTC	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	104, 135
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	2 cut(s)	303, 439
NlaIII	CATG	4 cut(s)	69, 76, 109, 321
NlaIV	GGNNCC	2 cut(s)	26, 323
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	339, 412
PkrI	GCNGC	3 cut(s)	114, 223, 226
PspN4I	GGNNCC	2 cut(s)	26, 323
PspPI	GGNCC	3 cut(s)	25, 194, 321
PstI	CTGCAG	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	303, 439
RseI	CAYNNNNRTG	2 cut(s)	104, 135
SatI	GCNGC	3 cut(s)	113, 222, 225
Sau3AI	GATC	2 cut(s)	303, 439
Sau96I	GGNCC	3 cut(s)	25, 194, 321
SduI	GDGCHC	3 cut(s)	18, 453, 466
SetI	ASST	9 cut(s)	114, 129, 153, 174, 209, 229, 380, 393, 450
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	194, 321
SmiMI	CAYNNNNRTG	2 cut(s)	104, 135
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SsiI	CCGC	4 cut(s)	133, 200, 221, 333
SspMI	CTAG	2 cut(s)	47, 392
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	290, 461
TaqI	TCGA	3 cut(s)	247, 329, 337
TaqII	GACCGA	1 cut(s)	8
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	2 cut(s)	339, 412
TseI	GCWGC	2 cut(s)	112, 224
TspDTI	ATGAA	3 cut(s)	54, 94, 301
TspGWI	ACGGA	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	194, 321
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	47, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.