Rh4BG040900

Belongs to the actin-binding proteins ADF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0004513
Physical Location & Seq
Reverse (-)
7304932 .. 7306912
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG040900.1

Sequence Viewer

Length: 432 bp
ATGGCTTTCAGAGGAGGAAATGCTTCCTCTGGCATGGGTGTTGCTGAGGACTGCCGCAACACATTCTTGGAACTGCAGAGAAAGAAGGCCTTTCGCTATGTGATTTTTAAGATTGATGAGAAGAAGAAAGAGGTTGTGGTAGAAAAGACTGGAGGCCCAGCTGAAAGTTATGATGATTTCACTGGTTCGTTGCCTGAAAATGATTGCCGATATGCAATCTACGACTTTGATTTTGTCACTTCAGAGAATTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTCGCCTTCTGTGTCACGGATCCGTGCCAAGATGCTCTATGCGACATCAAAGGACAGGTTCAGGAGGGAGCTGGAGGGTATCCATTATGAGATCCAGGCAACTGACCCCACTGAGATGGAGCTTGAAGTTCTTCAGGAGCGTGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF

Protein Analysis

143

Amino Acids

16.53

Weight (kDa)

5.78

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 11 - 143 1e-41 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AclWI GGATC 3 cut(s) 295, 308, 367
AcuI CTGAAG 2 cut(s) 225, 398
AgsI TTSAA 1 cut(s) 407
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 3 cut(s) 161, 352, 403
AluI AGCT 3 cut(s) 161, 352, 403
Alw21I GWGCWC 1 cut(s) 427
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 3 cut(s) 295, 308, 367
AoxI GGCC 2 cut(s) 87, 154
ApaLI GTGCAC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp700I GAANNNNTTC 2 cut(s) 22, 411
AspS9I GGNCC 1 cut(s) 155
BaeGI GKGCMC 1 cut(s) 427
BamHI GGATCC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 45
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 377
BciVI GTATCC 1 cut(s) 371
BfmI CTRYAG 1 cut(s) 74
BfuI GTATCC 1 cut(s) 371
BglII AGATCT 1 cut(s) 264
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 303
BpmI CTGGAG 2 cut(s) 171, 374
Bpu10I CCTNAGC 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 154, 187
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 377
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 2 cut(s) 36, 384
BseNI ACTGG 2 cut(s) 154, 187
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 157
BshFI GGCC 2 cut(s) 89, 156
BsiHKAI GWGCWC 1 cut(s) 427
BsnI GGCC 2 cut(s) 89, 156
Bsp1286I GDGCHC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 264, 300, 372
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 89, 156
BspCNI CTCAG 2 cut(s) 37, 385
BspLI GGNNCC 1 cut(s) 302
BspMAI CTGCAG 1 cut(s) 78
BspPI GGATC 3 cut(s) 295, 308, 367
BspQI GCTCTTC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 2 cut(s) 154, 187
BssMI GATC 3 cut(s) 264, 300, 372
Bst2UI CCWGG 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 45, 393
BstKTI GATC 3 cut(s) 267, 303, 375
BstMBI GATC 3 cut(s) 264, 300, 372
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 74
BstSLI GKGCMC 1 cut(s) 427
BstX2I RGATCY 3 cut(s) 264, 300, 372
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 3 cut(s) 264, 300, 372
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 89, 156
BtsIMutI CAGTG 3 cut(s) 180, 390, 427
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 2 cut(s) 34, 279
CviJI RGCY 6 cut(s) 5, 89, 156, 161, 352, 403
CviKI_1 RGCY 6 cut(s) 5, 89, 156, 161, 352, 403
DdeI CTNAG 2 cut(s) 45, 393
DpnI GATC 3 cut(s) 266, 302, 374
DpnII GATC 3 cut(s) 264, 300, 372
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 225, 398
EcoRII CCWGG 1 cut(s) 375
FaeI CATG 2 cut(s) 37, 282
FaiI YATR 7 cut(s) 35, 99, 171, 213, 280, 321, 369
FalI AAGNNNNNCTT 4 cut(s) 74, 106, 254, 286
FatI CATG 2 cut(s) 33, 278
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsaI CCCAGC 1 cut(s) 161
GsuI CTGGAG 2 cut(s) 171, 374
HaeIII GGCC 2 cut(s) 89, 156
Hin1II CATG 2 cut(s) 37, 282
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 2 cut(s) 11, 244
Hpy188III TCNNGA 2 cut(s) 343, 416
Hpy8I GTNNAC 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 79, 297
HpyCH4V TGCA 4 cut(s) 76, 215, 278, 425
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 45, 393
Hsp92II CATG 2 cut(s) 37, 282
Kzo9I GATC 3 cut(s) 264, 300, 372
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 3 cut(s) 349, 400, 418
LweI GCATC 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 235, 294
MalI GATC 3 cut(s) 266, 302, 374
MboI GATC 3 cut(s) 264, 300, 372
MboII GAAGA 6 cut(s) 133, 136, 259, 262, 268, 404
MflI RGATCY 3 cut(s) 264, 300, 372
MhlI GDGCHC 1 cut(s) 427
MluCI AATT 1 cut(s) 247
MnlI CCTC 8 cut(s) 5, 8, 37, 40, 124, 146, 339, 349
MroXI GAANNNNTTC 2 cut(s) 22, 411
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 258
NdeII GATC 3 cut(s) 264, 300, 372
NlaIII CATG 2 cut(s) 37, 282
NlaIV GGNNCC 1 cut(s) 302
NmuCI GTSAC 2 cut(s) 235, 294
PceI AGGCCT 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 22, 411
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 157
PspGI CCWGG 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 1 cut(s) 155
PstI CTGCAG 1 cut(s) 78
PsuI RGATCY 3 cut(s) 264, 300, 372
PvuII CAGCTG 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 395
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 3 cut(s) 264, 300, 372
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 377
SduI GDGCHC 1 cut(s) 427
SetI ASST 5 cut(s) 135, 163, 341, 354, 405
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 395
Sse9I AATT 1 cut(s) 247
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 55
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 375
TasI AATT 1 cut(s) 247
TauI GCSGC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 187, 397
TseFI GTSAC 2 cut(s) 235, 294
Tsp45I GTSAC 2 cut(s) 235, 294
TspDTI ATGAA 1 cut(s) 262
TspGWI ACGGA 2 cut(s) 293, 313
TspRI CASTG 2 cut(s) 187, 397
VneI GTGCAC 1 cut(s) 423
XmnI GAANNNNTTC 2 cut(s) 22, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.