HRDC domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G32415 AT2G32415 AT2G32415 |
| fragaria_vesca | FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 FvH4_6g43150 |
| malus_domestica | MD09G1109200.v1.1 |
| prunus_persica | Prupe.3G217000_v2.0.a1 |
| pyrus_communis | pycom09g03190 |
| rosa_chinensis | RchiOBHm_Chr2g0159251 |
| rosa_laevigata | RLG00000021146 |
| rosa_roxburghii | Rroxscaffold_2G00090670 |
| rosa_rugosa | Rorug02G0475100.1 Rorug02G0475200.1 Rorug02G0475300 Rorug02G0475400 |
| rosa_samantha | Rh2AG541800 Rh2BG554400 Rh2CG524500 Rh2DG564200 |
| rosa_wichuraiana | Rw2G044810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1669, 2018 |
| AatII | GACGTC | 1 cut(s) | 1985 |
| Acc36I | ACCTGC | 2 cut(s) | 1669, 2018 |
| AccB1I | GGYRCC | 1 cut(s) | 87 |
| AccII | CGCG | 2 cut(s) | 1123, 1504 |
| AciI | CCGC | 7 cut(s) | 53, 91, 179, 425, 451, 925, 2471 |
| AclWI | GGATC | 1 cut(s) | 560 |
| AcoI | YGGCCR | 1 cut(s) | 2614 |
| AcsI | RAATTY | 4 cut(s) | 197, 1925, 1932, 2633 |
| AcuI | CTGAAG | 3 cut(s) | 167, 987, 2178 |
| AcyI | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| AfaI | GTAC | 5 cut(s) | 953, 1904, 1956, 2371, 2526 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 158, 254 |
| AflII | CTTAAG | 1 cut(s) | 1352 |
| AflIII | ACRYGT | 2 cut(s) | 169, 1379 |
| AgeI | ACCGGT | 1 cut(s) | 1342 |
| AjnI | CCWGG | 2 cut(s) | 976, 2587 |
| Alw21I | GWGCWC | 3 cut(s) | 9, 1824, 2345 |
| Alw26I | GTCTC | 9 cut(s) | 362, 618, 710, 760, 1263, 2038, 2239, 2616, 2653 |
| AlwI | GGATC | 1 cut(s) | 560 |
| Ama87I | CYCGRG | 2 cut(s) | 911, 1234 |
| AoxI | GGCC | 3 cut(s) | 1497, 1630, 2614 |
| ApeKI | GCWGC | 9 cut(s) | 439, 748, 751, 986, 1168, 1480, 1889, 1892, 2057 |
| ApoI | RAATTY | 4 cut(s) | 197, 1925, 1932, 2633 |
| AsiGI | ACCGGT | 1 cut(s) | 1342 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 972 |
| AspLEI | GCGC | 2 cut(s) | 90, 2068 |
| AspS9I | GGNCC | 2 cut(s) | 2149, 2468 |
| AsuHPI | GGTGA | 4 cut(s) | 67, 1426, 2024, 2375 |
| AsuII | TTCGAA | 1 cut(s) | 251 |
| AvaI | CYCGRG | 2 cut(s) | 911, 1234 |
| AvaII | GGWCC | 2 cut(s) | 2149, 2468 |
| BaeGI | GKGCMC | 1 cut(s) | 1370 |
| BanI | GGYRCC | 1 cut(s) | 87 |
| BanII | GRGCYC | 3 cut(s) | 9, 1686, 2198 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2120, 2152, 2508, 2540 |
| BauI | CACGAG | 1 cut(s) | 124 |
| BbsI | GAAGAC | 4 cut(s) | 507, 984, 1221, 1977 |
| Bbv12I | GWGCWC | 3 cut(s) | 9, 1824, 2345 |
| BbvI | GCAGC | 9 cut(s) | 451, 735, 763, 973, 1180, 1492, 1876, 1879, 2044 |
| BccI | CCATC | 7 cut(s) | 784, 1568, 2101, 2288, 2360, 2378, 2513 |
| BceAI | ACGGC | 1 cut(s) | 2088 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1472, 1506 |
| BciT130I | CCWGG | 2 cut(s) | 978, 2589 |
| BcoDI | GTCTC | 9 cut(s) | 362, 618, 710, 760, 1263, 2038, 2239, 2616, 2653 |
| BfaI | CTAG | 4 cut(s) | 804, 882, 918, 1643 |
| BfmI | CTRYAG | 8 cut(s) | 749, 1146, 1221, 1555, 1801, 1893, 2250, 2331 |
| BfoI | RGCGCY | 2 cut(s) | 91, 2069 |
| BfrI | CTTAAG | 1 cut(s) | 1352 |
| BfuAI | ACCTGC | 2 cut(s) | 1669, 2018 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1690 |
| BglII | AGATCT | 1 cut(s) | 1838 |
| BlpI | GCTNAGC | 1 cut(s) | 1323 |
| BmcAI | AGTACT | 1 cut(s) | 1956 |
| Bme1390I | CCNGG | 2 cut(s) | 978, 2589 |
| Bme18I | GGWCC | 2 cut(s) | 2149, 2468 |
| BmeT110I | CYCGRG | 2 cut(s) | 911, 1234 |
| BmgT120I | GGNCC | 2 cut(s) | 2149, 2468 |
| BmiI | GGNNCC | 3 cut(s) | 89, 1539, 2150 |
| BmrFI | CCNGG | 2 cut(s) | 978, 2589 |
| BmsI | GCATC | 4 cut(s) | 211, 802, 2014, 2554 |
| BpiI | GAAGAC | 4 cut(s) | 507, 984, 1221, 1977 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1818 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1323 |
| Bpu14I | TTCGAA | 1 cut(s) | 251 |
| BpuEI | CTTGAG | 2 cut(s) | 734, 1261 |
| BsaAI | YACGTR | 1 cut(s) | 2528 |
| BsaHI | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| BsaI | GGTCTC | 1 cut(s) | 2239 |
| BsaJI | CCNNGG | 2 cut(s) | 663, 1627 |
| BsaWI | WCCGGW | 1 cut(s) | 1342 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 757, 787, 1758, 1788 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 158, 254 |
| Bse118I | RCCGGY | 2 cut(s) | 84, 1342 |
| Bse1I | ACTGG | 2 cut(s) | 705, 2014 |
| Bse3DI | GCAATG | 1 cut(s) | 2067 |
| BseBI | CCWGG | 2 cut(s) | 978, 2589 |
| BseDI | CCNNGG | 2 cut(s) | 663, 1627 |
| BseGI | GGATG | 6 cut(s) | 259, 1294, 1336, 2005, 2029, 2572 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 158, 254 |
| BseMI | GCAATG | 1 cut(s) | 2067 |
| BseMII | CTCAG | 8 cut(s) | 132, 167, 264, 314, 426, 1809, 2010, 2423 |
| BseNI | ACTGG | 2 cut(s) | 705, 2014 |
| BseRI | GAGGAG | 2 cut(s) | 112, 339 |
| BseSI | GKGCMC | 1 cut(s) | 1370 |
| BseXI | GCAGC | 9 cut(s) | 451, 735, 763, 973, 1180, 1492, 1876, 1879, 2044 |
| Bsh1236I | CGCG | 2 cut(s) | 1123, 1504 |
| Bsh1285I | CGRYCG | 1 cut(s) | 455 |
| BshFI | GGCC | 3 cut(s) | 1499, 1632, 2616 |
| BshNI | GGYRCC | 1 cut(s) | 87 |
| BshTI | ACCGGT | 1 cut(s) | 1342 |
| BsiEI | CGRYCG | 1 cut(s) | 455 |
| BsiHKAI | GWGCWC | 3 cut(s) | 9, 1824, 2345 |
| BsiHKCI | CYCGRG | 2 cut(s) | 911, 1234 |
| BsiSI | CCGG | 2 cut(s) | 85, 1343 |
| BslFI | GGGAC | 3 cut(s) | 1113, 1993, 2162 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 158, 254 |
| BsmAI | GTCTC | 9 cut(s) | 362, 618, 710, 760, 1263, 2038, 2239, 2616, 2653 |
| BsmFI | GGGAC | 3 cut(s) | 1113, 1993, 2162 |
| BsmI | GAATGC | 2 cut(s) | 136, 2094 |
| BsnI | GGCC | 3 cut(s) | 1499, 1632, 2616 |
| Bso31I | GGTCTC | 1 cut(s) | 2239 |
| BsoBI | CYCGRG | 2 cut(s) | 911, 1234 |
| Bsp119I | TTCGAA | 1 cut(s) | 251 |
| Bsp1286I | GDGCHC | 6 cut(s) | 9, 1370, 1686, 1824, 2198, 2345 |
| Bsp1407I | TGTACA | 1 cut(s) | 951 |
| Bsp143I | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1323 |
| Bsp68I | TCGCGA | 1 cut(s) | 1504 |
| BspACI | CCGC | 7 cut(s) | 53, 91, 179, 425, 451, 925, 2471 |
| BspANI | GGCC | 3 cut(s) | 1499, 1632, 2616 |
| BspCNI | CTCAG | 8 cut(s) | 133, 166, 265, 313, 427, 1810, 2011, 2422 |
| BspFNI | CGCG | 2 cut(s) | 1123, 1504 |
| BspHI | TCATGA | 3 cut(s) | 1108, 1843, 1873 |
| BspLI | GGNNCC | 3 cut(s) | 89, 1539, 2150 |
| BspMAI | CTGCAG | 3 cut(s) | 753, 1897, 2254 |
| BspMI | ACCTGC | 2 cut(s) | 1669, 2018 |
| BspPI | GGATC | 1 cut(s) | 560 |
| BspQI | GCTCTTC | 1 cut(s) | 1053 |
| BspT104I | TTCGAA | 1 cut(s) | 251 |
| BspT107I | GGYRCC | 1 cut(s) | 87 |
| BspTI | CTTAAG | 1 cut(s) | 1352 |
| BspTNI | GGTCTC | 1 cut(s) | 2239 |
| BsrDI | GCAATG | 1 cut(s) | 2067 |
| BsrFI | RCCGGY | 2 cut(s) | 84, 1342 |
| BsrGI | TGTACA | 1 cut(s) | 951 |
| BsrI | ACTGG | 2 cut(s) | 705, 2014 |
| BssAI | RCCGGY | 2 cut(s) | 84, 1342 |
| BssECI | CCNNGG | 2 cut(s) | 663, 1627 |
| BssMI | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| BssNI | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| BssSI | CACGAG | 1 cut(s) | 124 |
| BssT1I | CCWWGG | 1 cut(s) | 663 |
| Bst2BI | CACGAG | 1 cut(s) | 124 |
| Bst2UI | CCWGG | 2 cut(s) | 978, 2589 |
| Bst6I | CTCTTC | 4 cut(s) | 780, 1053, 1179, 2614 |
| BstACI | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| BstAFI | CTTAAG | 1 cut(s) | 1352 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 448, 1889, 2258 |
| BstAUI | TGTACA | 1 cut(s) | 951 |
| BstBAI | YACGTR | 1 cut(s) | 2528 |
| BstBI | TTCGAA | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 2 cut(s) | 86, 1121 |
| BstDSI | CCRYGG | 1 cut(s) | 1627 |
| BstF5I | GGATG | 6 cut(s) | 259, 1294, 1336, 2005, 2029, 2572 |
| BstFNI | CGCG | 2 cut(s) | 1123, 1504 |
| BstH2I | RGCGCY | 2 cut(s) | 91, 2069 |
| BstHHI | GCGC | 2 cut(s) | 90, 2068 |
| BstKTI | GATC | 7 cut(s) | 279, 568, 698, 1336, 1841, 2054, 2487 |
| BstMAI | GTCTC | 9 cut(s) | 362, 618, 710, 760, 1263, 2038, 2239, 2616, 2653 |
| BstMBI | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| BstMCI | CGRYCG | 1 cut(s) | 455 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 90, 142, 448, 1462, 1690, 1889, 2063, 2258 |
| BstNI | CCWGG | 2 cut(s) | 978, 2589 |
| BstNSI | RCATGY | 3 cut(s) | 672, 1383, 1889 |
| BstSCI | CCNGG | 2 cut(s) | 976, 2587 |
| BstSFI | CTRYAG | 8 cut(s) | 749, 1146, 1221, 1555, 1801, 1893, 2250, 2331 |
| BstSLI | GKGCMC | 1 cut(s) | 1370 |
| BstUI | CGCG | 2 cut(s) | 1123, 1504 |
| BstV1I | GCAGC | 9 cut(s) | 451, 735, 763, 973, 1180, 1492, 1876, 1879, 2044 |
| BstV2I | GAAGAC | 4 cut(s) | 507, 984, 1221, 1977 |
| BstX2I | RGATCY | 1 cut(s) | 1838 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2588 |
| BstYI | RGATCY | 1 cut(s) | 1838 |
| BsuRI | GGCC | 3 cut(s) | 1499, 1632, 2616 |
| BtgI | CCRYGG | 1 cut(s) | 1627 |
| BtsCI | GGATG | 6 cut(s) | 259, 1294, 1336, 2005, 2029, 2572 |
| BtsI | GCAGTG | 1 cut(s) | 468 |
| BtsIMutI | CAGTG | 7 cut(s) | 279, 432, 468, 698, 870, 2417, 2617 |
| BtuMI | TCGCGA | 1 cut(s) | 1504 |
| BveI | ACCTGC | 2 cut(s) | 1669, 2018 |
| Cac8I | GCNNGC | 2 cut(s) | 86, 1121 |
| CciI | TCATGA | 3 cut(s) | 1108, 1843, 1873 |
| CfoI | GCGC | 2 cut(s) | 90, 2068 |
| Cfr10I | RCCGGY | 2 cut(s) | 84, 1342 |
| Cfr13I | GGNCC | 2 cut(s) | 2149, 2468 |
| CseI | GACGC | 3 cut(s) | 761, 978, 1682 |
| CsiI | ACCWGGT | 1 cut(s) | 2587 |
| Csp6I | GTAC | 5 cut(s) | 952, 1903, 1955, 2370, 2525 |
| CspAI | ACCGGT | 1 cut(s) | 1342 |
| CviQI | GTAC | 5 cut(s) | 952, 1903, 1955, 2370, 2525 |
| DinI | GGCGCC | 1 cut(s) | 89 |
| DpnI | GATC | 7 cut(s) | 278, 567, 697, 1335, 1840, 2053, 2486 |
| DpnII | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| DraI | TTTAAA | 2 cut(s) | 166, 1017 |
| EaeI | YGGCCR | 1 cut(s) | 2614 |
| Eam1104I | CTCTTC | 4 cut(s) | 780, 1053, 1179, 2614 |
| EarI | CTCTTC | 4 cut(s) | 780, 1053, 1179, 2614 |
| Ecl136II | GAGCTC | 1 cut(s) | 7 |
| Eco130I | CCWWGG | 1 cut(s) | 663 |
| Eco147I | AGGCCT | 1 cut(s) | 1499 |
| Eco24I | GRGCYC | 3 cut(s) | 9, 1686, 2198 |
| Eco31I | GGTCTC | 1 cut(s) | 2239 |
| Eco47I | GGWCC | 2 cut(s) | 2149, 2468 |
| Eco53kI | GAGCTC | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 3 cut(s) | 167, 987, 2178 |
| Eco88I | CYCGRG | 2 cut(s) | 911, 1234 |
| EcoICRI | GAGCTC | 1 cut(s) | 7 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2149 |
| EcoRI | GAATTC | 3 cut(s) | 197, 1932, 2633 |
| EcoRII | CCWGG | 2 cut(s) | 976, 2587 |
| EcoT14I | CCWWGG | 1 cut(s) | 663 |
| EcoT38I | GRGCYC | 3 cut(s) | 9, 1686, 2198 |
| EgeI | GGCGCC | 1 cut(s) | 89 |
| EheI | GGCGCC | 1 cut(s) | 89 |
| ErhI | CCWWGG | 1 cut(s) | 663 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1346, 1378 |
| FaqI | GGGAC | 3 cut(s) | 1113, 1993, 2162 |
| FauNDI | CATATG | 2 cut(s) | 265, 355 |
| FokI | GGATG | 6 cut(s) | 246, 1301, 1343, 2012, 2036, 2559 |
| FriOI | GRGCYC | 3 cut(s) | 9, 1686, 2198 |
| FspBI | CTAG | 4 cut(s) | 804, 882, 918, 1643 |
| GlaI | GCGC | 2 cut(s) | 89, 2067 |
| HaeII | RGCGCY | 2 cut(s) | 91, 2069 |
| HaeIII | GGCC | 3 cut(s) | 1499, 1632, 2616 |
| HapII | CCGG | 2 cut(s) | 85, 1343 |
| HgaI | GACGC | 3 cut(s) | 761, 978, 1682 |
| HhaI | GCGC | 2 cut(s) | 90, 2068 |
| Hin1I | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| Hin6I | GCGC | 2 cut(s) | 88, 2066 |
| HinP1I | GCGC | 2 cut(s) | 88, 2066 |
| HincII | GTYRAC | 1 cut(s) | 430 |
| HindII | GTYRAC | 1 cut(s) | 430 |
| HindIII | AAGCTT | 2 cut(s) | 1073, 2175 |
| HpaII | CCGG | 2 cut(s) | 85, 1343 |
| HphI | GGTGA | 4 cut(s) | 67, 1426, 2024, 2375 |
| Hpy166II | GTNNAC | 7 cut(s) | 430, 514, 954, 1417, 2144, 2525, 2644 |
| Hpy8I | GTNNAC | 7 cut(s) | 430, 514, 954, 1417, 2144, 2525, 2644 |
| Hpy99I | CGWCG | 1 cut(s) | 1798 |
| HpyAV | CCTTC | 5 cut(s) | 258, 1489, 1754, 2248, 2372 |
| HpyCH4IV | ACGT | 4 cut(s) | 169, 1982, 2426, 2527 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 90, 142, 448, 1462, 1690, 1889, 2063, 2258 |
| HpySE526I | ACGT | 4 cut(s) | 169, 1982, 2426, 2527 |
| Hsp92I | GRCGYC | 3 cut(s) | 88, 1693, 1982 |
| HspAI | GCGC | 2 cut(s) | 88, 2066 |
| KasI | GGCGCC | 1 cut(s) | 87 |
| KroI | GCCGGC | 1 cut(s) | 84 |
| KroNI | GCCGGC | 1 cut(s) | 86 |
| Kzo9I | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| LguI | GCTCTTC | 1 cut(s) | 1053 |
| LmnI | GCTCC | 5 cut(s) | 4, 1453, 1543, 2340, 2387 |
| Lsp1109I | GCAGC | 9 cut(s) | 451, 735, 763, 973, 1180, 1492, 1876, 1879, 2044 |
| LweI | GCATC | 4 cut(s) | 211, 802, 2014, 2554 |
| MabI | ACCWGGT | 1 cut(s) | 2587 |
| MaeI | CTAG | 4 cut(s) | 804, 882, 918, 1643 |
| MaeII | ACGT | 4 cut(s) | 169, 1982, 2426, 2527 |
| MaeIII | GTNAC | 6 cut(s) | 55, 70, 525, 1778, 2012, 2606 |
| MalI | GATC | 7 cut(s) | 278, 567, 697, 1335, 1840, 2053, 2486 |
| MboI | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| MfeI | CAATTG | 2 cut(s) | 519, 947 |
| MflI | RGATCY | 1 cut(s) | 1838 |
| MhlI | GDGCHC | 6 cut(s) | 9, 1370, 1686, 1824, 2198, 2345 |
| Mly113I | GGCGCC | 1 cut(s) | 88 |
| MlyI | GAGTC | 4 cut(s) | 383, 1235, 2009, 2655 |
| MmeI | TCCRAC | 1 cut(s) | 2576 |
| MreI | CGCCGGCG | 1 cut(s) | 84 |
| MroNI | GCCGGC | 1 cut(s) | 84 |
| MroXI | GAANNNNTTC | 1 cut(s) | 972 |
| MseI | TTAA | 9 cut(s) | 119, 165, 383, 645, 1016, 1094, 1353, 1518, 2501 |
| MslI | CAYNNNNRTG | 4 cut(s) | 264, 358, 636, 1287 |
| MspA1I | CMGCKG | 1 cut(s) | 2057 |
| MspCI | CTTAAG | 1 cut(s) | 1352 |
| MspI | CCGG | 2 cut(s) | 85, 1343 |
| MspR9I | CCNGG | 2 cut(s) | 978, 2589 |
| MunI | CAATTG | 2 cut(s) | 519, 947 |
| Mva1269I | GAATGC | 2 cut(s) | 136, 2094 |
| MvaI | CCWGG | 2 cut(s) | 978, 2589 |
| MvnI | CGCG | 2 cut(s) | 1123, 1504 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 90, 142, 448, 1462, 1690, 1889, 2063, 2258 |
| NaeI | GCCGGC | 1 cut(s) | 86 |
| NarI | GGCGCC | 1 cut(s) | 88 |
| NdeI | CATATG | 2 cut(s) | 265, 355 |
| NdeII | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| NgoMIV | GCCGGC | 1 cut(s) | 84 |
| NlaIV | GGNNCC | 3 cut(s) | 89, 1539, 2150 |
| NmuCI | GTSAC | 4 cut(s) | 55, 70, 2012, 2606 |
| NruI | TCGCGA | 1 cut(s) | 1504 |
| NspI | RCATGY | 3 cut(s) | 672, 1383, 1889 |
| NspV | TTCGAA | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 1 cut(s) | 911 |
| PagI | TCATGA | 3 cut(s) | 1108, 1843, 1873 |
| PaqCI | CACCTGC | 2 cut(s) | 1669, 2018 |
| PceI | AGGCCT | 1 cut(s) | 1499 |
| PciI | ACATGT | 1 cut(s) | 1379 |
| PciSI | GCTCTTC | 1 cut(s) | 1053 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 33 |
| PctI | GAATGC | 2 cut(s) | 136, 2094 |
| PdiI | GCCGGC | 1 cut(s) | 86 |
| PdmI | GAANNNNTTC | 1 cut(s) | 972 |
| PfeI | GAWTC | 8 cut(s) | 295, 350, 875, 897, 1105, 1306, 1961, 2003 |
| PflFI | GACNNNGTC | 2 cut(s) | 373, 771 |
| PinAI | ACCGGT | 1 cut(s) | 1342 |
| PleI | GAGTC | 4 cut(s) | 382, 1234, 2009, 2655 |
| PluTI | GGCGCC | 1 cut(s) | 91 |
| PpsI | GAGTC | 4 cut(s) | 382, 1234, 2009, 2655 |
| Ppu21I | YACGTR | 1 cut(s) | 2528 |
| PpuMI | RGGWCCY | 1 cut(s) | 2149 |
| PscI | ACATGT | 1 cut(s) | 1379 |
| Psp124BI | GAGCTC | 1 cut(s) | 9 |
| Psp5II | RGGWCCY | 1 cut(s) | 2149 |
| Psp6I | CCWGG | 2 cut(s) | 976, 2587 |
| PspGI | CCWGG | 2 cut(s) | 976, 2587 |
| PspN4I | GGNNCC | 3 cut(s) | 89, 1539, 2150 |
| PspPI | GGNCC | 2 cut(s) | 2149, 2468 |
| PspPPI | RGGWCCY | 1 cut(s) | 2149 |
| PstI | CTGCAG | 3 cut(s) | 753, 1897, 2254 |
| PsuI | RGATCY | 1 cut(s) | 1838 |
| PsyI | GACNNNGTC | 2 cut(s) | 373, 771 |
| PvuII | CAGCTG | 1 cut(s) | 2057 |
| RruI | TCGCGA | 1 cut(s) | 1504 |
| RsaI | GTAC | 5 cut(s) | 953, 1904, 1956, 2371, 2526 |
| RsaNI | GTAC | 5 cut(s) | 952, 1903, 1955, 2370, 2525 |
| RseI | CAYNNNNRTG | 4 cut(s) | 264, 358, 636, 1287 |
| SacI | GAGCTC | 1 cut(s) | 9 |
| SapI | GCTCTTC | 1 cut(s) | 1053 |
| SaqAI | TTAA | 9 cut(s) | 119, 165, 383, 645, 1016, 1094, 1353, 1518, 2501 |
| Sau3AI | GATC | 7 cut(s) | 276, 565, 695, 1333, 1838, 2051, 2484 |
| Sau96I | GGNCC | 2 cut(s) | 2149, 2468 |
| ScaI | AGTACT | 1 cut(s) | 1956 |
| SchI | GAGTC | 4 cut(s) | 383, 1235, 2009, 2655 |
| ScrFI | CCNGG | 2 cut(s) | 978, 2589 |
| SduI | GDGCHC | 6 cut(s) | 9, 1370, 1686, 1824, 2198, 2345 |
| SexAI | ACCWGGT | 1 cut(s) | 2587 |
| SfaNI | GCATC | 4 cut(s) | 211, 802, 2014, 2554 |
| SfcI | CTRYAG | 8 cut(s) | 749, 1146, 1221, 1555, 1801, 1893, 2250, 2331 |
| SfoI | GGCGCC | 1 cut(s) | 89 |
| Sfr274I | CTCGAG | 1 cut(s) | 911 |
| SfuI | TTCGAA | 1 cut(s) | 251 |
| SgrAI | CRCCGGYG | 1 cut(s) | 84 |
| SinI | GGWCC | 2 cut(s) | 2149, 2468 |
| SlaI | CTCGAG | 1 cut(s) | 911 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 264, 358, 636, 1287 |
| SmlI | CTYRAG | 4 cut(s) | 713, 911, 1240, 1352 |
| SmoI | CTYRAG | 4 cut(s) | 713, 911, 1240, 1352 |
| SseBI | AGGCCT | 1 cut(s) | 1499 |
| SsiI | CCGC | 7 cut(s) | 53, 91, 179, 425, 451, 925, 2471 |
| SspDI | GGCGCC | 1 cut(s) | 87 |
| SspI | AATATT | 2 cut(s) | 402, 574 |
| SspMI | CTAG | 4 cut(s) | 804, 882, 918, 1643 |
| SstI | GAGCTC | 1 cut(s) | 9 |
| StuI | AGGCCT | 1 cut(s) | 1499 |
| StyD4I | CCNGG | 2 cut(s) | 976, 2587 |
| StyI | CCWWGG | 1 cut(s) | 663 |
| TaiI | ACGT | 4 cut(s) | 172, 1985, 2429, 2530 |
| TaqI | TCGA | 4 cut(s) | 251, 912, 1959, 2217 |
| TatI | WGTACW | 2 cut(s) | 951, 1954 |
| TauI | GCSGC | 1 cut(s) | 93 |
| TfiI | GAWTC | 8 cut(s) | 295, 350, 875, 897, 1105, 1306, 1961, 2003 |
| Tru1I | TTAA | 9 cut(s) | 119, 165, 383, 645, 1016, 1094, 1353, 1518, 2501 |
| Tru9I | TTAA | 9 cut(s) | 119, 165, 383, 645, 1016, 1094, 1353, 1518, 2501 |
| TscAI | CASTG | 7 cut(s) | 286, 439, 475, 705, 877, 2417, 2617 |
| TseFI | GTSAC | 4 cut(s) | 55, 70, 2012, 2606 |
| TseI | GCWGC | 9 cut(s) | 439, 748, 751, 986, 1168, 1480, 1889, 1892, 2057 |
| Tsp45I | GTSAC | 4 cut(s) | 55, 70, 2012, 2606 |
| TspGWI | ACGGA | 6 cut(s) | 89, 1035, 1041, 1117, 1766, 1937 |
| TspRI | CASTG | 7 cut(s) | 286, 439, 475, 705, 877, 2417, 2617 |
| Tth111I | GACNNNGTC | 2 cut(s) | 373, 771 |
| Vha464I | CTTAAG | 1 cut(s) | 1352 |
| VpaK11BI | GGWCC | 2 cut(s) | 2149, 2468 |
| XapI | RAATTY | 4 cut(s) | 197, 1925, 1932, 2633 |
| XceI | RCATGY | 3 cut(s) | 672, 1383, 1889 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1148, 2588 |
| XhoI | CTCGAG | 1 cut(s) | 911 |
| XmnI | GAANNNNTTC | 1 cut(s) | 972 |
| XspI | CTAG | 4 cut(s) | 804, 882, 918, 1643 |
| ZraI | GACGTC | 1 cut(s) | 1983 |
| ZrmI | AGTACT | 1 cut(s) | 1956 |