AT2G34050

complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008757
Physical Location & Seq
Reverse (-)
14382683 .. 14384450
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34050.1

Sequence Viewer

Length: 747 bp
ATGAGAAGAATCGTCGGTTCAATTTCGAGTCTTGCTAAAGATAAGCTCTCTTCATCTTCTTATTCTTCGTCTAGACAAATTTTCACTGCGCGTTCATCTTCTTGGCAACGAGATGCATCAAGTAAGCTCTCAGAAGCTTCTTTACCTGGAAACCACATAAAATGGGCTTCGCTTGGTTCAGTCAGAAATTCGAGATTCGCATCTGGTTTTACACCATTGCAGCAAAAACCTTTGGATTCAATCATGGATTTGGCCAGAGCCAAGACTAAATCCCCTGAAGAACTCACTTCGATCTGGGACGATTATCATTTGGGACGAGGTCATATTGGGTTAACGATGAAAGCTCAGCTTTATCGATTGTTGGAGCAACGAGCCTCCGAGTGCCGATACTTTGTCATTCCATTGTGGAGAGGAAATGGTTACATAACAATGTTTGCTCAAGTTGAAGCGCCTCACATGATTTTTACTGGTCTCGAAGACTACAAAGCAAGAGGAACTCAAGCGGCTCCTTACCTGACTACAACCTTCTACACTGAGCTTTCAGAGACAAAAGACTTGGTCTTTATCCGAGGCGATGTTGTGTTCACAAGCAAACTCACTGACGAGGAGGCTAAATGGATCATGGAGACAGCTCAATCGTTTTATTTGAACGACTCTCGCTACAAGCTGCTTGAGCGGTTCAATAAACATACTCATGACTTTGAGTTCAAGGATGTGTTACAAGCTCTGGATATGCCTCTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ATP11

Protein Analysis

248

Amino Acids

28.38

Weight (kDa)

9.04

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 57 - 239 6.3e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 676
AccII CGCG 1 cut(s) 91
AciI CCGC 2 cut(s) 503, 676
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 78, 187
AcuI CTGAAG 1 cut(s) 297
AgsI TTSAA 6 cut(s) 21, 240, 446, 649, 682, 709
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 9 cut(s) 46, 127, 137, 344, 349, 538, 632, 667, 725
AluI AGCT 9 cut(s) 46, 127, 137, 344, 349, 538, 632, 667, 725
Alw26I GTCTC 3 cut(s) 476, 539, 620
AlwI GGATC 1 cut(s) 626
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 220, 667
ApoI RAATTY 2 cut(s) 78, 187
AspLEI GCGC 2 cut(s) 91, 451
BalI TGGCCA 1 cut(s) 254
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbsI GAAGAC 1 cut(s) 483
BbvI GCAGC 2 cut(s) 232, 654
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 3 cut(s) 476, 539, 620
BfaI CTAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 452
BisI GCNGC 3 cut(s) 221, 504, 668
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 3 cut(s) 222, 505, 669
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 3 cut(s) 103, 125, 209
BpiI GAAGAC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 345
BpuEI CTTGAG 3 cut(s) 423, 483, 692
Bsa29I ATCGAT 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 568
Bse1I ACTGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 199
BseBI CCWGG 1 cut(s) 147
BseCI ATCGAT 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 1 cut(s) 718
BseJI GATNNNNATC 1 cut(s) 199
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 3 cut(s) 144, 359, 525
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 2 cut(s) 232, 654
Bsh1236I CGCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 355
BslFI GGGAC 2 cut(s) 311, 327
BsmAI GTCTC 3 cut(s) 476, 539, 620
BsmFI GGGAC 2 cut(s) 311, 327
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 476
Bsp143I GATC 2 cut(s) 291, 618
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 2 cut(s) 503, 676
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 3 cut(s) 143, 358, 526
BspDI ATCGAT 1 cut(s) 355
BspFNI CGCG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 476
BsrBI CCGCTC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 215
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 2 cut(s) 291, 618
Bst2UI CCWGG 1 cut(s) 147
Bst6I CTCTTC 2 cut(s) 55, 744
BstDEI CTNAG 3 cut(s) 130, 345, 534
BstF5I GGATG 1 cut(s) 718
BstFNI CGCG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 2 cut(s) 91, 451
BstKTI GATC 2 cut(s) 294, 621
BstMAI GTCTC 3 cut(s) 476, 539, 620
BstMBI GATC 2 cut(s) 291, 618
BstMWI GCNNNNNNNGC 1 cut(s) 673
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstUI CGCG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 232, 654
BstV2I GAAGAC 1 cut(s) 483
Bsu15I ATCGAT 1 cut(s) 355
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 718
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 3 cut(s) 84, 531, 597
CciI TCATGA 1 cut(s) 694
CfoI GCGC 2 cut(s) 91, 451
ClaI ATCGAT 1 cut(s) 355
CviAII CATG 4 cut(s) 244, 457, 622, 695
DdeI CTNAG 3 cut(s) 130, 345, 534
DpnI GATC 2 cut(s) 293, 620
DpnII GATC 2 cut(s) 291, 618
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 55, 744
EarI CTCTTC 2 cut(s) 55, 744
Eco31I GGTCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 4 cut(s) 247, 460, 625, 698
FaiI YATR 9 cut(s) 158, 245, 324, 425, 458, 623, 690, 696, 734
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FaqI GGGAC 2 cut(s) 311, 327
FatI CATG 4 cut(s) 243, 456, 621, 694
Fnu4HI GCNGC 3 cut(s) 221, 504, 668
FokI GGATG 1 cut(s) 725
Fsp4HI GCNGC 3 cut(s) 221, 504, 668
FspBI CTAG 1 cut(s) 72
GlaI GCGC 2 cut(s) 90, 450
GluI GCNGC 3 cut(s) 221, 504, 668
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 1 cut(s) 254
HhaI GCGC 2 cut(s) 91, 451
Hin1II CATG 4 cut(s) 247, 460, 625, 698
Hin6I GCGC 2 cut(s) 89, 449
HinP1I GCGC 2 cut(s) 89, 449
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 5 cut(s) 9, 28, 195, 236, 653
HpaI GTTAAC 1 cut(s) 333
Hpy166II GTNNAC 2 cut(s) 333, 585
Hpy188I TCNGA 5 cut(s) 133, 185, 379, 544, 569
Hpy188III TCNNGA 5 cut(s) 72, 192, 473, 695, 728
Hpy8I GTNNAC 2 cut(s) 333, 585
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 535
HpyCH4V TGCA 2 cut(s) 116, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 673
HpyF3I CTNAG 3 cut(s) 130, 345, 534
Hsp92II CATG 4 cut(s) 247, 460, 625, 698
HspAI GCGC 2 cut(s) 89, 449
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 2 cut(s) 291, 618
LmnI GCTCC 2 cut(s) 364, 511
LpnPI CCDG 9 cut(s) 132, 159, 189, 268, 280, 288, 453, 527, 713
Lsp1109I GCAGC 2 cut(s) 232, 654
LweI GCATC 3 cut(s) 103, 125, 209
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 419, 717
MalI GATC 2 cut(s) 293, 620
MbiI CCGCTC 1 cut(s) 676
MboI GATC 2 cut(s) 291, 618
MboII GAAGA 8 cut(s) 18, 42, 48, 57, 90, 290, 488, 731
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 3 cut(s) 21, 78, 187
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 2 cut(s) 37, 647
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 9 cut(s) 311, 385, 404, 462, 485, 563, 598, 601, 747
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 118
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 332
MslI CAYNNNNRTG 2 cut(s) 428, 693
Msp20I TGGCCA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 673
NdeII GATC 2 cut(s) 291, 618
NlaIII CATG 4 cut(s) 247, 460, 625, 698
NlaIV GGNNCC 1 cut(s) 507
NsiI ATGCAT 1 cut(s) 118
PagI TCATGA 1 cut(s) 694
PfeI GAWTC 3 cut(s) 9, 195, 236
PflFI GACNNNGTC 2 cut(s) 318, 557
PkrI GCNGC 3 cut(s) 222, 505, 669
PleI GAGTC 2 cut(s) 36, 647
PpsI GAGTC 2 cut(s) 36, 647
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 507
PsyI GACNNNGTC 2 cut(s) 318, 557
RseI CAYNNNNRTG 2 cut(s) 428, 693
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 3 cut(s) 221, 504, 668
Sau3AI GATC 2 cut(s) 291, 618
SchI GAGTC 2 cut(s) 37, 647
ScrFI CCNGG 1 cut(s) 147
SfaNI GCATC 3 cut(s) 103, 125, 209
SmiMI CAYNNNNRTG 2 cut(s) 428, 693
SmlI CTYRAG 3 cut(s) 438, 498, 671
SmoI CTYRAG 3 cut(s) 438, 498, 671
Sse9I AATT 3 cut(s) 21, 78, 187
SsiI CCGC 2 cut(s) 503, 676
SspMI CTAG 1 cut(s) 72
StyD4I CCNGG 1 cut(s) 145
TaqI TCGA 5 cut(s) 26, 191, 290, 355, 474
TasI AATT 3 cut(s) 21, 78, 187
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 3 cut(s) 9, 195, 236
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TscAI CASTG 3 cut(s) 91, 538, 604
TseI GCWGC 2 cut(s) 220, 667
TspDTI ATGAA 3 cut(s) 42, 84, 353
TspRI CASTG 3 cut(s) 91, 538, 604
Tth111I GACNNNGTC 2 cut(s) 318, 557
XapI RAATTY 2 cut(s) 78, 187
XbaI TCTAGA 1 cut(s) 71
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.