Rh5DG073600

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008757
Physical Location & Seq
Forward (+)
6440015 .. 6441772
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG073600.1

Sequence Viewer

Length: 720 bp
ATGCGAAGAGCCTCAAGGATCATTACCTCATCAGCTTCAAACCTCAGCCACCCCAAACACTCCTTCACTCCTTTGTTTGTACCACAAAATCACCAAAACCCAGAAACGCAATCGCTTCCCGGTGGTTTTCTGAAATGGGGTTCGCTTGGTTCGGTCAGAGCTTCAAGTTTTGCTTCTGGGTTCTCGCCCTTGAAGCCCAAGCCGTTGGATTCCATTATTGACATTCAGAGGGTTAAGGATCGCTCACCTGAGGACATTGCTTCGGCTTGGGACGATTATCACTTGGGAAGAGGACATATTGGTGCATCAATGAAGGCGAGTCTGTATCACTTGTTGGAGCATAGAGCAGCAGATTGCCGGTATTTTGTCATTCCTTTGTGGAGAGGGAGTGGTTATGTCACAATGTTCGCTCAAGTGCAGATGCCACACATGATTTTCACTGGTCTTGAAGATTATAAGGCAAGAGGAACTCAAGCTACTCCCTACTTCACTATGACGTATTACAATGAATTTGCACAAAGCAAGGACATGGTGCTTATCCGAGGCGATGTTGTACTTCCCAGCAAGCTCAGTGACTCGGAAGCAAAATGGCTGCTGGAGACCGCCCAAACCTTCTATTTGAATGATGTCAGGTACAAGTTGGTTGAACGGTTCAACAAACAAACACATGATTTCGAATTCAAGGATGTCTTGCAAGCACTGGATATGCCCAATCTGTGA

Protein Analysis

239

Amino Acids

27.24

Weight (kDa)

8.87

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 62 - 230 7.7e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AciI CCGC 1 cut(s) 603
AclWI GGATC 2 cut(s) 26, 246
AcsI RAATTY 2 cut(s) 509, 677
AfaI GTAC 3 cut(s) 81, 555, 635
AgsI TTSAA 8 cut(s) 39, 165, 193, 449, 622, 647, 655, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 35, 161, 476, 568
AluI AGCT 4 cut(s) 35, 161, 476, 568
Alw26I GTCTC 1 cut(s) 593
AlwI GGATC 2 cut(s) 26, 246
ApeKI GCWGC 2 cut(s) 347, 592
ApoI RAATTY 2 cut(s) 509, 677
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 2 cut(s) 83, 237
AsuII TTCGAA 1 cut(s) 675
AxyI CCTNAGG 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 359, 579
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 593
BisI GCNGC 2 cut(s) 348, 593
BlsI GCNGC 2 cut(s) 349, 594
Bme1390I CCNGG 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 314, 411
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 675
BpuEI CTTGAG 2 cut(s) 396, 456
BpuMI CCSGG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 1 cut(s) 541
BsaXI ACNNNNNCTCC 2 cut(s) 373, 403
Bse118I RCCGGY 1 cut(s) 357
Bse1I ACTGG 2 cut(s) 445, 705
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 58, 240, 583
BseNI ACTGG 2 cut(s) 445, 705
BseXI GCAGC 2 cut(s) 359, 579
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 120, 358
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 593
BsmFI GGGAC 1 cut(s) 284
Bso31I GGTCTC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 675
Bsp143I GATC 2 cut(s) 18, 238
BspACI CCGC 1 cut(s) 603
BspCNI CTCAG 3 cut(s) 57, 241, 582
BspPI GGATC 2 cut(s) 26, 246
BspT104I TTCGAA 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 357
BsrI ACTGG 2 cut(s) 445, 705
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 2 cut(s) 18, 238
Bst4CI ACNGT 1 cut(s) 651
Bst6I CTCTTC 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 566, 696
BstDEI CTNAG 3 cut(s) 44, 249, 569
BstF5I GGATG 1 cut(s) 691
BstKTI GATC 2 cut(s) 21, 241
BstMAI GTCTC 1 cut(s) 593
BstMBI GATC 2 cut(s) 18, 238
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 359, 579
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 249
BtgZI GCGATG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 691
BtsIMutI CAGTG 3 cut(s) 438, 577, 698
Cac8I GCNNGC 2 cut(s) 566, 696
Cfr10I RCCGGY 1 cut(s) 357
Csp6I GTAC 3 cut(s) 80, 554, 634
CviAII CATG 3 cut(s) 430, 529, 668
CviQI GTAC 3 cut(s) 80, 554, 634
DdeI CTNAG 3 cut(s) 44, 249, 569
DpnI GATC 2 cut(s) 20, 240
DpnII GATC 2 cut(s) 18, 238
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 249
EcoRI GAATTC 1 cut(s) 677
FaeI CATG 3 cut(s) 433, 532, 671
FaiI YATR 9 cut(s) 297, 342, 396, 431, 456, 494, 530, 669, 707
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 674, 706
FaqI GGGAC 1 cut(s) 284
FatI CATG 3 cut(s) 429, 528, 667
Fnu4HI GCNGC 2 cut(s) 348, 593
FokI GGATG 1 cut(s) 698
Fsp4HI GCNGC 2 cut(s) 348, 593
GluI GCNGC 2 cut(s) 348, 593
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 617
HapII CCGG 2 cut(s) 120, 358
Hin1II CATG 3 cut(s) 433, 532, 671
HinfI GANTC 3 cut(s) 209, 319, 575
HpaII CCGG 2 cut(s) 120, 358
HphI GGTGA 2 cut(s) 83, 237
Hpy188I TCNGA 5 cut(s) 132, 158, 228, 542, 580
Hpy188III TCNNGA 1 cut(s) 446
HpyAV CCTTC 3 cut(s) 73, 307, 622
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 4 cut(s) 305, 418, 515, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
HpyF3I CTNAG 3 cut(s) 44, 249, 569
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 3 cut(s) 433, 532, 671
Kzo9I GATC 2 cut(s) 18, 238
LmnI GCTCC 1 cut(s) 337
Lsp1109I GCAGC 2 cut(s) 359, 579
LweI GCATC 2 cut(s) 314, 411
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 2 cut(s) 397, 572
MalI GATC 2 cut(s) 20, 240
MboI GATC 2 cut(s) 18, 238
MboII GAAGA 3 cut(s) 18, 300, 461
MluCI AATT 2 cut(s) 509, 677
MlyI GAGTC 2 cut(s) 328, 569
MmeI TCCRAC 2 cut(s) 186, 315
MnlI CCTC 9 cut(s) 22, 37, 53, 222, 244, 284, 377, 458, 536
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 2 cut(s) 120, 358
MspR9I CCNGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 193
NciI CCSGG 1 cut(s) 120
NdeII GATC 2 cut(s) 18, 238
NlaIII CATG 3 cut(s) 433, 532, 671
NmuCI GTSAC 2 cut(s) 397, 572
NspV TTCGAA 1 cut(s) 675
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 2 cut(s) 349, 594
PleI GAGTC 2 cut(s) 327, 569
PpsI GAGTC 2 cut(s) 327, 569
PsiI TTATAA 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 560
PsrI GAACNNNNNNTAC 2 cut(s) 460, 492
RsaI GTAC 3 cut(s) 81, 555, 635
RsaNI GTAC 3 cut(s) 80, 554, 634
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 348, 593
Sau3AI GATC 2 cut(s) 18, 238
SchI GAGTC 2 cut(s) 328, 569
ScrFI CCNGG 1 cut(s) 120
SfaNI GCATC 2 cut(s) 314, 411
SfuI TTCGAA 1 cut(s) 675
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 3 cut(s) 13, 411, 471
SmoI CTYRAG 3 cut(s) 13, 411, 471
Sse9I AATT 2 cut(s) 509, 677
SsiI CCGC 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 651
TaiI ACGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 675
TaqII GACCGA 1 cut(s) 142
TasI AATT 2 cut(s) 509, 677
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 3 cut(s) 445, 577, 705
TseFI GTSAC 2 cut(s) 397, 572
TseI GCWGC 2 cut(s) 347, 592
Tsp45I GTSAC 2 cut(s) 397, 572
TspDTI ATGAA 2 cut(s) 326, 522
TspRI CASTG 3 cut(s) 445, 577, 705
XapI RAATTY 2 cut(s) 509, 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.