pycom05g28340

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0008757
Physical Location & Seq
Reverse (-)
29099326 .. 29101425
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28340.1

Sequence Viewer

Length: 738 bp
ATGCGAAGAGCCTCCAGAATCATTACGCTTCCAGCTTCGATCCTTATCGGCCATTCTTCTTCTGCTGGTGCTGTGCACAAGTTCACAACTCTGACCCCGCTACAAAATCGCCACAACTCGCAACAACAATCGTTCCCGGGAGATTTTCTGAAATGGGGTTCGCTGGGTTTCTTCAGGGCTTCGAGCTTCGCTACTGGGTTCAATCCCTTGAAGGCTAAGCCGTTGGATTCAATCATTGATGTTGAGAGGGTGAAAGATCGCTCGGCGGAGGACATCGCTTCGGCTTGGGACGATTTTCACTTGGGAAGAGGTCATATTGGTGCATCCATGAAAGCAAAACTATATAACCTGTTGGAGCGTAGAGCGGTAGATTGCCGGTATTTTGTCATTCCCTTGTGGAGAGGAAATGGTTATACCACAATGTTTGCTCAAGTACAGATGCCACACATGATTTTCACCGGTCTTGAAGATTACAAGGCGAGGGGAACTCAAGCTTCTCCCTACTTCGCTGTAACTTACTACAACGAATTTGCAGAAAGCAAGGACATGGTGCTTATCCGAGGGGATGTTGTACTCCCAAGCAAACTCACTGACTCGGAGGCAAAGTGGCTCGTGGAGACCACCCAATCATTTTATTTGAACGACATGAGGTATAAGCTGGTCGAACGGTTCAACAAACAAACACACGATTTTGAGTTCAAGGATGTCCTGCAAGCATTAGAAATGCCGAATCTGTGA

Protein Analysis

246

Amino Acids

27.99

Weight (kDa)

9.08

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 67 - 236 1.1e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 365
AciI CCGC 3 cut(s) 98, 266, 365
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 157
AfaI GTAC 2 cut(s) 435, 573
AgeI ACCGGT 1 cut(s) 458
AgsI TTSAA 7 cut(s) 202, 211, 231, 467, 640, 673, 700
AluBI AGCT 4 cut(s) 35, 186, 494, 658
AluI AGCT 4 cut(s) 35, 186, 494, 658
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 611
Alw44I GTGCAC 1 cut(s) 74
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 136
AoxI GGCC 1 cut(s) 49
ApaLI GTGCAC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 527
AsiGI ACCGGT 1 cut(s) 458
AsuC2I CCSGG 2 cut(s) 137, 138
AsuHPI GGTGA 2 cut(s) 262, 448
AvaI CYCGRG 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 78
BauI CACGAG 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 205
BcnI CCSGG 2 cut(s) 137, 138
BcoDI GTCTC 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 137, 138
BmeT110I CYCGRG 1 cut(s) 136
BmrFI CCNGG 2 cut(s) 137, 138
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 2 cut(s) 332, 429
BmuI ACTGGG 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 472, 504
Bpu1102I GCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 414, 474
BpuMI CCSGG 2 cut(s) 137, 138
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 136, 559
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bse118I RCCGGY 2 cut(s) 375, 458
Bse1I ACTGG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 136, 559
BseGI GGATG 3 cut(s) 323, 571, 709
BseJI GATNNNNATC 1 cut(s) 44
BseNI ACTGG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 136
BsiSI CCGG 3 cut(s) 137, 376, 459
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 39, 256
Bsp1720I GCTNAGC 1 cut(s) 216
BspACI CCGC 3 cut(s) 98, 266, 365
BspANI GGCC 1 cut(s) 51
BspPI GGATC 1 cut(s) 34
BspTNI GGTCTC 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 365
BsrFI RCCGGY 2 cut(s) 375, 458
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 2 cut(s) 375, 458
BssECI CCNNGG 2 cut(s) 136, 559
BssMI GATC 2 cut(s) 39, 256
BssSI CACGAG 1 cut(s) 611
Bst2BI CACGAG 1 cut(s) 611
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 1 cut(s) 301
BstC8I GCNNGC 1 cut(s) 714
BstDEI CTNAG 1 cut(s) 216
BstF5I GGATG 3 cut(s) 323, 571, 709
BstKTI GATC 2 cut(s) 42, 259
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 2 cut(s) 39, 256
BstSCI CCNGG 2 cut(s) 135, 136
BstSLI GKGCMC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 3 cut(s) 323, 571, 709
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 1 cut(s) 714
Cfr10I RCCGGY 2 cut(s) 375, 458
Cfr9I CCCGGG 1 cut(s) 136
Csp6I GTAC 2 cut(s) 434, 572
CspAI ACCGGT 1 cut(s) 458
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 4 cut(s) 328, 448, 547, 646
CviQI GTAC 2 cut(s) 434, 572
DdeI CTNAG 1 cut(s) 216
DpnI GATC 2 cut(s) 41, 258
DpnII GATC 2 cut(s) 39, 256
EaeI YGGCCR 1 cut(s) 49
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EciI GGCGGA 1 cut(s) 281
Eco31I GGTCTC 1 cut(s) 611
Eco57I CTGAAG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 136
FaeI CATG 4 cut(s) 331, 451, 550, 649
FaiI YATR 9 cut(s) 315, 329, 343, 345, 414, 449, 548, 647, 654
FaqI GGGAC 1 cut(s) 302
FatI CATG 4 cut(s) 327, 447, 546, 645
FauI CCCGC 1 cut(s) 105
FokI GGATG 3 cut(s) 310, 578, 716
GsaI CCCAGC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 51
HapII CCGG 3 cut(s) 137, 376, 459
Hin1II CATG 4 cut(s) 331, 451, 550, 649
HindIII AAGCTT 1 cut(s) 492
HinfI GANTC 4 cut(s) 18, 227, 593, 730
HpaII CCGG 3 cut(s) 137, 376, 459
HphI GGTGA 2 cut(s) 262, 448
Hpy166II GTNNAC 2 cut(s) 76, 84
Hpy188I TCNGA 4 cut(s) 93, 150, 560, 598
Hpy188III TCNNGA 2 cut(s) 15, 464
Hpy8I GTNNAC 2 cut(s) 76, 84
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4V TGCA 4 cut(s) 76, 323, 533, 712
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 4 cut(s) 331, 451, 550, 649
Kzo9I GATC 2 cut(s) 39, 256
LmnI GCTCC 1 cut(s) 355
LweI GCATC 2 cut(s) 332, 429
MaeIII GTNAC 1 cut(s) 511
MalI GATC 2 cut(s) 41, 258
MbiI CCGCTC 1 cut(s) 365
MboI GATC 2 cut(s) 39, 256
MboII GAAGA 6 cut(s) 18, 48, 51, 163, 318, 479
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 527
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 2 cut(s) 204, 333
MnlI CCTC 9 cut(s) 22, 240, 262, 302, 395, 474, 554, 592, 642
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 3 cut(s) 137, 376, 459
MspR9I CCNGG 2 cut(s) 137, 138
NciI CCSGG 2 cut(s) 137, 138
NdeII GATC 2 cut(s) 39, 256
NlaIII CATG 4 cut(s) 331, 451, 550, 649
NmeAIII GCCGAG 1 cut(s) 242
PfeI GAWTC 3 cut(s) 18, 227, 730
PinAI ACCGGT 1 cut(s) 458
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 163
RsaI GTAC 2 cut(s) 435, 573
RsaNI GTAC 2 cut(s) 434, 572
RseI CAYNNNNRTG 1 cut(s) 318
Sau3AI GATC 2 cut(s) 39, 256
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 2 cut(s) 137, 138
SduI GDGCHC 1 cut(s) 78
SetI ASST 7 cut(s) 37, 188, 313, 351, 496, 653, 660
SfaNI GCATC 2 cut(s) 332, 429
SmaI CCCGGG 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 2 cut(s) 429, 489
SmoI CTYRAG 2 cut(s) 429, 489
Sse9I AATT 1 cut(s) 527
SsiI CCGC 3 cut(s) 98, 266, 365
StyD4I CCNGG 2 cut(s) 135, 136
TaaI ACNGT 1 cut(s) 669
TaqI TCGA 3 cut(s) 38, 182, 663
TasI AATT 1 cut(s) 527
TatI WGTACW 2 cut(s) 433, 571
TfiI GAWTC 3 cut(s) 18, 227, 730
TscAI CASTG 1 cut(s) 595
TspDTI ATGAA 1 cut(s) 344
TspMI CCCGGG 1 cut(s) 136
TspRI CASTG 1 cut(s) 595
VneI GTGCAC 1 cut(s) 74
XapI RAATTY 1 cut(s) 527
XmaI CCCGGG 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.