RchiOBHm_Chr5g0009901

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0008757
Physical Location & Seq
Forward (+)
6549111 .. 6551855
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29073

Sequence Viewer

Length: 744 bp
ATGCGAAGAGCCTCAAGGATCATTACCTCATCAGCTTCAAACCTCAGCCACCGCGCTTCATCTAGTTTTGCTCACCCCAAGCACTCCTTCACTCCTTTGTTTGTACCACAAAATCACCAAAACCCAGAAACGCAATCGCTTCCCGGTGGTTTTCTGAAATGGGGTTCGCTTGGTTCGGTCAGAGCTTCAAGTTTTGCTTCTGGGTTCTCGCCGTTGAAGCCCAAGCCGTTGGATTCCATTATTGACATTCAGAGGGTTAAGGATCGCTCACCTGAGGACATTGCTTCGGCTTGGGACGATTATCACTTGGGAAGAGGACATATTGGTGCATCAATGAAGGCGAGTCTGTATCACTTGTTGGAGCATAGAGCAGCAGATTGCCGGTATTTCGTCATTCCTTTGTGGAGAGGGAGTGGTTATGTCACAATGTTTGCTCAAGTGCAGATGCCACACATGATTTTCACTGGTCTTGAAGATTATAAGGCAAGAGGAACTCAAGCTACTCCCTACTTCACTATGACGTATTACAATGAATTTGCACAAAGCAAGGACATGGTGCTTATCCGAGGCGATGTTGTACTCCCCAGCAAGCTCAGTGACTCGGAAGCAAAATGGCTGCTGGAGACCGCCCAAACCTTCTATTTGAATGATGTCAGGTACAAGTTGGTTGAACGGTTCAACAAACAAACACATGATTTCGAATTCAAGGATGTCTTGCAAGCACTGGATATGCCCAATCTGTGA

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

9.08

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 70 - 238 7.7e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 52, 627
AclWI GGATC 2 cut(s) 26, 270
AcsI RAATTY 2 cut(s) 533, 701
AfaI GTAC 3 cut(s) 105, 579, 659
AgsI TTSAA 8 cut(s) 39, 189, 217, 473, 646, 671, 679, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 4 cut(s) 35, 185, 500, 592
AluI AGCT 4 cut(s) 35, 185, 500, 592
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 26, 270
ApeKI GCWGC 2 cut(s) 371, 616
ApoI RAATTY 2 cut(s) 533, 701
AspLEI GCGC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 65, 107, 261
AsuII TTCGAA 1 cut(s) 699
AxyI CCTNAGG 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 383, 603
BceAI ACGGC 2 cut(s) 196, 211
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 372, 617
BlsI GCNGC 2 cut(s) 373, 618
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 338, 435
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 420, 480
BpuMI CCSGG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 469, 729
Bse21I CCTNAGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 715
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 3 cut(s) 58, 264, 607
BseNI ACTGG 2 cut(s) 469, 729
BseXI GCAGC 2 cut(s) 383, 603
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 54
BsiSI CCGG 2 cut(s) 144, 382
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 18, 262
BspACI CCGC 2 cut(s) 52, 627
BspCNI CTCAG 3 cut(s) 57, 265, 606
BspFNI CGCG 1 cut(s) 54
BspPI GGATC 2 cut(s) 26, 270
BspT104I TTCGAA 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 469, 729
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 2 cut(s) 18, 262
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 2 cut(s) 590, 720
BstDEI CTNAG 3 cut(s) 44, 273, 593
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 21, 265
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 18, 262
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 383, 603
BstXI CCANNNNNNTGG 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 3 cut(s) 462, 601, 722
Cac8I GCNNGC 2 cut(s) 590, 720
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 3 cut(s) 104, 578, 658
CviAII CATG 3 cut(s) 454, 553, 692
CviQI GTAC 3 cut(s) 104, 578, 658
DdeI CTNAG 3 cut(s) 44, 273, 593
DpnI GATC 2 cut(s) 20, 264
DpnII GATC 2 cut(s) 18, 262
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 701
FaeI CATG 3 cut(s) 457, 556, 695
FaiI YATR 9 cut(s) 321, 366, 420, 455, 480, 518, 554, 693, 731
FalI AAGNNNNNCTT 6 cut(s) 71, 103, 181, 213, 698, 730
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 453, 552, 691
Fnu4HI GCNGC 2 cut(s) 372, 617
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 2 cut(s) 372, 617
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 372, 617
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 2 cut(s) 144, 382
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 457, 556, 695
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 233, 343, 599
HpaII CCGG 2 cut(s) 144, 382
HphI GGTGA 3 cut(s) 65, 107, 261
Hpy188I TCNGA 5 cut(s) 156, 182, 252, 566, 604
Hpy188III TCNNGA 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 97, 331, 646
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 329, 442, 539, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 3 cut(s) 44, 273, 593
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 3 cut(s) 457, 556, 695
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 18, 262
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 2 cut(s) 383, 603
LweI GCATC 2 cut(s) 338, 435
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 421, 596
MalI GATC 2 cut(s) 20, 264
MboI GATC 2 cut(s) 18, 262
MboII GAAGA 3 cut(s) 18, 324, 485
MluCI AATT 2 cut(s) 533, 701
MlyI GAGTC 2 cut(s) 352, 593
MmeI TCCRAC 2 cut(s) 210, 339
MnlI CCTC 9 cut(s) 22, 37, 53, 246, 268, 308, 401, 482, 560
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 2 cut(s) 144, 382
MspR9I CCNGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 18, 262
NlaIII CATG 3 cut(s) 457, 556, 695
NmuCI GTSAC 2 cut(s) 421, 596
NspV TTCGAA 1 cut(s) 699
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 373, 618
PleI GAGTC 2 cut(s) 351, 593
PpsI GAGTC 2 cut(s) 351, 593
PsiI TTATAA 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 584
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
RsaI GTAC 3 cut(s) 105, 579, 659
RsaNI GTAC 3 cut(s) 104, 578, 658
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 372, 617
Sau3AI GATC 2 cut(s) 18, 262
SchI GAGTC 2 cut(s) 352, 593
ScrFI CCNGG 1 cut(s) 144
SfaNI GCATC 2 cut(s) 338, 435
SfuI TTCGAA 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 3 cut(s) 13, 435, 495
SmoI CTYRAG 3 cut(s) 13, 435, 495
Sse9I AATT 2 cut(s) 533, 701
SsiI CCGC 2 cut(s) 52, 627
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 699
TaqII GACCGA 1 cut(s) 166
TasI AATT 2 cut(s) 533, 701
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 469, 601, 729
TseFI GTSAC 2 cut(s) 421, 596
TseI GCWGC 2 cut(s) 371, 616
Tsp45I GTSAC 2 cut(s) 421, 596
TspDTI ATGAA 3 cut(s) 48, 350, 546
TspRI CASTG 3 cut(s) 469, 601, 729
XapI RAATTY 2 cut(s) 533, 701
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.