Rroxscaffold_1G00066310

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008757
Physical Location & Seq
Reverse (-)
87819938 .. 87821759
1822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066310.1

Sequence Viewer

Length: 744 bp
ATGCGAAGAGCCTCAAGGATCATTACCTCATCAGCTTCAAACCTCAGCCACCGCGCTTCATCTAGTTTTGCTCACCCCAAACACTCCTCCACTACTTTGTCTGTACCACAAAATCACCAAAACCCAGAAACGCAATCGCTTCGCGGTGGTTTTCTGAAATGGGGTTCGCTTGGTTCGGTCAGAGCTTCAAGTTTTGCTTCTGGGTTCTCGCCCTTGAAGCCCAAGCCGTTGGATTCCATTATTGACATTCAGAGGGTTAAGGATCGCTCACCTGAGGACATTGCTTCGGCTTGGGACGATTATCACTTGGGAAGAGGACATATTGGTGCATCAATGAAAGCGAGTCTGTATCACCTGTTGGAGCATAGAGCAGCAGATTGCCGGTATTTCGTCATTCCTTTGTGGAGAGGGAGTGGTTATGTCACAATGTTTGCTCAAGTGCAGATGCCACACATGATTTTCACTGGTCTTGAAGATTACAAGGCAAGAGGAACTCAAGCTACGCCCTACTTCACTATGACGTATTACAATGAATTTGCACAAAGCAAGGACATGGTGCTTATCCGAGGCGATGTTGTACTCCCCAGCAAGCTCAGTGACTCAGAAGCAAAATGGCTTCTGGAGACCACCCAAACCTTCTATTTGAATGATGTCAGGTACAAGTTGGTTGAACGGTTCAACAAACAAACACATGATTTCGAATTCAAGGATGTCTTGCAAGCACTGGATATGCCCAATCTGTGA

Protein Analysis

247

Amino Acids

28.06

Weight (kDa)

9.23

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 29 - 238 1.1e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 54, 144
AciI CCGC 2 cut(s) 52, 144
AclWI GGATC 2 cut(s) 26, 270
AcsI RAATTY 2 cut(s) 533, 701
AfaI GTAC 3 cut(s) 105, 579, 659
AgsI TTSAA 8 cut(s) 39, 189, 217, 473, 646, 671, 679, 706
AluBI AGCT 4 cut(s) 35, 185, 500, 592
AluI AGCT 4 cut(s) 35, 185, 500, 592
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 26, 270
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 533, 701
AspLEI GCGC 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 65, 107, 261, 344
AsuII TTCGAA 1 cut(s) 699
AxyI CCTNAGG 1 cut(s) 273
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 63
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmsI GCATC 2 cut(s) 338, 435
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 420, 480
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 1 cut(s) 565
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 469, 729
Bse21I CCTNAGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 1 cut(s) 715
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 4 cut(s) 58, 264, 607, 615
BseNI ACTGG 2 cut(s) 469, 729
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 2 cut(s) 54, 144
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 617
Bsp119I TTCGAA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 18, 262
BspACI CCGC 2 cut(s) 52, 144
BspCNI CTCAG 4 cut(s) 57, 265, 606, 614
BspFNI CGCG 2 cut(s) 54, 144
BspPI GGATC 2 cut(s) 26, 270
BspT104I TTCGAA 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 469, 729
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 2 cut(s) 18, 262
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 2 cut(s) 590, 720
BstDEI CTNAG 4 cut(s) 44, 273, 593, 601
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 2 cut(s) 54, 144
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 21, 265
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 18, 262
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstUI CGCG 2 cut(s) 54, 144
BstV1I GCAGC 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 229
Bsu36I CCTNAGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 3 cut(s) 462, 601, 722
Cac8I GCNNGC 2 cut(s) 590, 720
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 3 cut(s) 104, 578, 658
CviAII CATG 3 cut(s) 454, 553, 692
CviQI GTAC 3 cut(s) 104, 578, 658
DdeI CTNAG 4 cut(s) 44, 273, 593, 601
DpnI GATC 2 cut(s) 20, 264
DpnII GATC 2 cut(s) 18, 262
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 617
Eco81I CCTNAGG 1 cut(s) 273
EcoRI GAATTC 1 cut(s) 701
FaeI CATG 3 cut(s) 457, 556, 695
FaiI YATR 8 cut(s) 321, 366, 420, 455, 518, 554, 693, 731
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 698, 730
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 453, 552, 691
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 1 cut(s) 382
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 457, 556, 695
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 233, 343, 599
HpaII CCGG 1 cut(s) 382
HphI GGTGA 4 cut(s) 65, 107, 261, 344
Hpy188I TCNGA 5 cut(s) 156, 182, 252, 566, 604
Hpy188III TCNNGA 2 cut(s) 470, 620
HpyAV CCTTC 1 cut(s) 646
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 329, 442, 539, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 4 cut(s) 44, 273, 593, 601
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 3 cut(s) 457, 556, 695
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 18, 262
LmnI GCTCC 1 cut(s) 361
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 338, 435
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 421, 596
MalI GATC 2 cut(s) 20, 264
MboI GATC 2 cut(s) 18, 262
MboII GAAGA 3 cut(s) 18, 324, 485
MluCI AATT 2 cut(s) 533, 701
MlyI GAGTC 2 cut(s) 352, 593
MmeI TCCRAC 2 cut(s) 210, 339
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 382
MvnI CGCG 2 cut(s) 54, 144
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 2 cut(s) 18, 262
NlaIII CATG 3 cut(s) 457, 556, 695
NmuCI GTSAC 2 cut(s) 421, 596
NspV TTCGAA 1 cut(s) 699
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 2 cut(s) 351, 593
PpsI GAGTC 2 cut(s) 351, 593
PspFI CCCAGC 1 cut(s) 584
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
RsaI GTAC 3 cut(s) 105, 579, 659
RsaNI GTAC 3 cut(s) 104, 578, 658
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 18, 262
SchI GAGTC 2 cut(s) 352, 593
SfaNI GCATC 2 cut(s) 338, 435
SfuI TTCGAA 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 3 cut(s) 13, 435, 495
SmoI CTYRAG 3 cut(s) 13, 435, 495
Sse9I AATT 2 cut(s) 533, 701
SsiI CCGC 2 cut(s) 52, 144
SspMI CTAG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 699
TaqII GACCGA 1 cut(s) 166
TasI AATT 2 cut(s) 533, 701
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 469, 601, 729
TseFI GTSAC 2 cut(s) 421, 596
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 421, 596
TspDTI ATGAA 3 cut(s) 48, 350, 546
TspRI CASTG 3 cut(s) 469, 601, 729
XapI RAATTY 2 cut(s) 533, 701
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.