FvH4_7g02080

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008757
Physical Location & Seq
Forward (+)
2428797 .. 2431290
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02080.t1

Sequence Viewer

Length: 738 bp
ATGTCCAAAATGCGAAGAGCCTCAAGGATCATTACCTCATTAGTTTCAAACCTCCGCACCTTTGCGTCACCGAGTTTTGCTCTGCCCAGAAACTCCTCCACTACTTTGATTCAAACCCCACAAAGGCAATCTCTTCCCGGTGGCTTTCTGAAATGGGGTTCGCTTGGTTCGGTTAGAGCTTCAAGTTTTGCCTCTGGGTTCTCGCCCTTGAAGCCCAAGCCCTTGGATTCCATTATTGACATTCAGAGGGTTAAGGATCGCTCACCTGAGGACATTGCTTCGGCTTGGGACGATTATCACTTGGGGAGAGGACATATTGGTGCATCAATGAAAGCTAGTCTGTATCACTTGTTCGAGCATAGAGCAGCAGATTGCCGGTATTTTGTCATTCCTCTGTGGAGAGGGAGTGGTTATGTCACGATGTTTGCTCAAGTGCAGATGCCACACATGATTTTCACCGGTCTTGAAGATTATAAGGCAAGAGGAACTCAAGCTACTCCCTACTTTACTATGACCTATTACAATGAATTTGCACAAAGCAAGGACATGGTACTTATCCGAGGCGATGTTGTTCTCCCCAGCAAGCTCAGTGACTCAGAAGCAAAATGGCTTCTGGAGACCACCCAAACCTTCTATTTGAATGACGTCAGGTATAAGTTGGTTGAACGGTTCAACAAACAAACACATGATTTTGAATTCAAGGATGTTTTGCAAACACTGGATATGCCGAATCTATGA

Protein Analysis

246

Amino Acids

27.97

Weight (kDa)

9.47

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 68 - 236 1.8e-37 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AatII GACGTC 1 cut(s) 648
AciI CCGC 1 cut(s) 55
AclWI GGATC 2 cut(s) 35, 264
AcsI RAATTY 2 cut(s) 527, 695
AcyI GRCGYC 1 cut(s) 645
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 458
AluBI AGCT 4 cut(s) 179, 335, 494, 586
AluI AGCT 4 cut(s) 179, 335, 494, 586
Alw26I GTCTC 1 cut(s) 611
AlwI GGATC 2 cut(s) 35, 264
ApeKI GCWGC 1 cut(s) 365
ApoI RAATTY 2 cut(s) 527, 695
AsiGI ACCGGT 1 cut(s) 458
AsuC2I CCSGG 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 60, 255, 448
AxyI CCTNAGG 1 cut(s) 267
BbvI GCAGC 1 cut(s) 377
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 611
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 366
BlsI GCNGC 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 332, 429
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 3 cut(s) 7, 414, 474
BpuMI CCSGG 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 645
BsaI GGTCTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 222, 559
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 2 cut(s) 375, 458
Bse1I ACTGG 1 cut(s) 723
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 273
BseDI CCNNGG 2 cut(s) 222, 559
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 258, 601, 609
BseNI ACTGG 1 cut(s) 723
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 458
BsiSI CCGG 3 cut(s) 138, 376, 459
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 611
BsmFI GGGAC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 611
Bsp143I GATC 2 cut(s) 27, 256
BspACI CCGC 1 cut(s) 55
BspCNI CTCAG 3 cut(s) 259, 600, 608
BspPI GGATC 2 cut(s) 35, 264
BspQI GCTCTTC 1 cut(s) 10
BspTNI GGTCTC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 375, 458
BsrI ACTGG 1 cut(s) 723
BssAI RCCGGY 2 cut(s) 375, 458
BssECI CCNNGG 2 cut(s) 222, 559
BssMI GATC 2 cut(s) 27, 256
BssNI GRCGYC 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 669
Bst6I CTCTTC 2 cut(s) 10, 138
BstACI GRCGYC 1 cut(s) 645
BstC8I GCNNGC 1 cut(s) 584
BstDEI CTNAG 3 cut(s) 267, 587, 595
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 2 cut(s) 30, 259
BstMAI GTCTC 1 cut(s) 611
BstMBI GATC 2 cut(s) 27, 256
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 136
BstV1I GCAGC 1 cut(s) 377
BstXI CCANNNNNNTGG 1 cut(s) 223
Bsu36I CCTNAGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 579
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 595, 716
Cac8I GCNNGC 1 cut(s) 584
Cfr10I RCCGGY 2 cut(s) 375, 458
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 551
CspAI ACCGGT 1 cut(s) 458
CviAII CATG 3 cut(s) 448, 547, 686
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 3 cut(s) 267, 587, 595
DpnI GATC 2 cut(s) 29, 258
DpnII GATC 2 cut(s) 27, 256
Eam1104I CTCTTC 2 cut(s) 10, 138
EarI CTCTTC 2 cut(s) 10, 138
Eco130I CCWWGG 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 611
Eco81I CCTNAGG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 695
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 451, 550, 689
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 447, 546, 685
Fnu4HI GCNGC 1 cut(s) 366
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 1 cut(s) 366
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 366
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 635
HapII CCGG 3 cut(s) 138, 376, 459
HgaI GACGC 1 cut(s) 54
Hin1I GRCGYC 1 cut(s) 645
Hin1II CATG 3 cut(s) 451, 550, 689
HinfI GANTC 4 cut(s) 109, 227, 593, 730
HpaII CCGG 3 cut(s) 138, 376, 459
HphI GGTGA 3 cut(s) 60, 255, 448
Hpy188I TCNGA 4 cut(s) 150, 246, 560, 598
Hpy188III TCNNGA 3 cut(s) 418, 464, 614
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 4 cut(s) 323, 436, 533, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 3 cut(s) 267, 587, 595
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 1 cut(s) 645
Hsp92II CATG 3 cut(s) 451, 550, 689
Kzo9I GATC 2 cut(s) 27, 256
LguI GCTCTTC 1 cut(s) 10
Lsp1109I GCAGC 1 cut(s) 377
LweI GCATC 2 cut(s) 332, 429
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 66, 415, 590
MalI GATC 2 cut(s) 29, 258
MboI GATC 2 cut(s) 27, 256
MboII GAAGA 3 cut(s) 27, 125, 479
MluCI AATT 2 cut(s) 527, 695
MlyI GAGTC 1 cut(s) 587
MseI TTAA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 318
MspI CCGG 3 cut(s) 138, 376, 459
MspR9I CCNGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 138
NdeII GATC 2 cut(s) 27, 256
NlaIII CATG 3 cut(s) 451, 550, 689
NmuCI GTSAC 3 cut(s) 66, 415, 590
PciSI GCTCTTC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 109, 227, 730
PinAI ACCGGT 1 cut(s) 458
PkrI GCNGC 1 cut(s) 367
PleI GAGTC 1 cut(s) 587
PpsI GAGTC 1 cut(s) 587
PsiI TTATAA 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 578
PsrI GAACNNNNNNTAC 4 cut(s) 335, 367, 478, 510
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 366
Sau3AI GATC 2 cut(s) 27, 256
SchI GAGTC 1 cut(s) 587
ScrFI CCNGG 1 cut(s) 138
SfaNI GCATC 2 cut(s) 332, 429
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 3 cut(s) 22, 429, 489
SmoI CTYRAG 3 cut(s) 22, 429, 489
Sse9I AATT 2 cut(s) 527, 695
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 354
TasI AATT 2 cut(s) 527, 695
TfiI GAWTC 3 cut(s) 109, 227, 730
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 2 cut(s) 595, 723
TseFI GTSAC 3 cut(s) 66, 415, 590
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 3 cut(s) 66, 415, 590
TspDTI ATGAA 2 cut(s) 344, 540
TspRI CASTG 2 cut(s) 595, 723
XapI RAATTY 2 cut(s) 527, 695
XspI CTAG 1 cut(s) 336
ZraI GACGTC 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.