Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001709.1

Orthogroup ID

OG0008757

Physical Location & Seq

Genomic Coordinates Reverse (-)

58684 .. 60441

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001709.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgcgaagagcctcaaggatcattacctcatcagcttcaaacctcagccaccccaaacactccttcactcctttgtttgtaccacaaaatcaccaaaacccagaaacgcaatcgcttcccggtggttttctgaaatggggttcgcttggttcggtcagagcttcaagttttgcttctgggttctcgcccttgaagcccaagccgttggattccattattgacattcagagggttaaggatcgctcacctgaggacattgcttcggcttgggacgattatcacttgggaagaggacatattggtgcatcaatgaaggcgagtctgtatcacttgttggagcatagagcagcagattgccggtattttgtcattcctttgtggagagggagtggttatgtcacaatgttcgctcaagtgcagatgccacacatgattttcactggtcttgaagattataaggcaagaggaactcaagctactccctacttcactatgacgtattacaatgaatttgcacaaagcaaggacatggtgcttatccgaggcgatgttgtacttcccagcaagctcagtgactcggaagcaaaatggctgctggaaaccgcccaaaccttctatttgaatgatgtcaggtacaagttggttgaacggttcaacaaacaaacacatgatttcgaattcaaggatgtcttgcaagcactggatatgcccaatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0033615 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP11

Protein Analysis

239

Amino Acids

27.24

Weight (kDa)

8.87

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34050
fragaria_vesca	FvH4_3g08250 FvH4_7g02080
malus_domestica	MD05G1306300.v1.1 MD10G1285300.v1.1
prunus_persica	Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1
pyrus_communis	pycom05g28340 pycom10g23840
rosa_chinensis	RchiOBHm_Chr5g0009901
rosa_laevigata	RLG00000031707
rosa_multiflora	Rmu_sc0001709.1_g000017
rosa_roxburghii	Rroxscaffold_1G00066310
rosa_rugosa	Rorug04G0446600
rosa_samantha	Rh5AG078200 Rh5BG073100 Rh5CG085500 Rh5DG073600
rosa_wichuraiana	Rw5G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	2 cut(s)	26, 246
AcsI	RAATTY	2 cut(s)	509, 677
AfaI	GTAC	3 cut(s)	81, 555, 635
AgsI	TTSAA	8 cut(s)	39, 165, 193, 449, 622, 647, 655, 682
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	35, 161, 476, 568
AluI	AGCT	4 cut(s)	35, 161, 476, 568
AlwI	GGATC	2 cut(s)	26, 246
ApeKI	GCWGC	2 cut(s)	347, 592
ApoI	RAATTY	2 cut(s)	509, 677
AsuC2I	CCSGG	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	83, 237
AsuII	TTCGAA	1 cut(s)	675
AxyI	CCTNAGG	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	359, 579
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	120
BisI	GCNGC	2 cut(s)	348, 593
BlsI	GCNGC	2 cut(s)	349, 594
Bme1390I	CCNGG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	314, 411
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	675
BpuEI	CTTGAG	2 cut(s)	396, 456
BpuMI	CCSGG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bse118I	RCCGGY	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	445, 705
Bse21I	CCTNAGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	1 cut(s)	691
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	3 cut(s)	58, 240, 583
BseNI	ACTGG	2 cut(s)	445, 705
BseXI	GCAGC	2 cut(s)	359, 579
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	120, 358
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	18, 238
BspACI	CCGC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	57, 241, 582
BspPI	GGATC	2 cut(s)	26, 246
BspT104I	TTCGAA	1 cut(s)	675
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	357
BsrI	ACTGG	2 cut(s)	445, 705
BssAI	RCCGGY	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	2 cut(s)	18, 238
Bst4CI	ACNGT	1 cut(s)	651
Bst6I	CTCTTC	1 cut(s)	283
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	2 cut(s)	566, 696
BstDEI	CTNAG	3 cut(s)	44, 249, 569
BstF5I	GGATG	1 cut(s)	691
BstKTI	GATC	2 cut(s)	21, 241
BstMBI	GATC	2 cut(s)	18, 238
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	359, 579
BstXI	CCANNNNNNTGG	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	249
BtgZI	GCGATG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	3 cut(s)	438, 577, 698
Cac8I	GCNNGC	2 cut(s)	566, 696
Cfr10I	RCCGGY	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	80, 554, 634
CviAII	CATG	3 cut(s)	430, 529, 668
CviQI	GTAC	3 cut(s)	80, 554, 634
DdeI	CTNAG	3 cut(s)	44, 249, 569
DpnI	GATC	2 cut(s)	20, 240
DpnII	GATC	2 cut(s)	18, 238
Eam1104I	CTCTTC	1 cut(s)	283
EarI	CTCTTC	1 cut(s)	283
Eco81I	CCTNAGG	1 cut(s)	249
EcoRI	GAATTC	1 cut(s)	677
FaeI	CATG	3 cut(s)	433, 532, 671
FaiI	YATR	9 cut(s)	297, 342, 396, 431, 456, 494, 530, 669, 707
FalI	AAGNNNNNCTT	4 cut(s)	157, 189, 674, 706
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	3 cut(s)	429, 528, 667
Fnu4HI	GCNGC	2 cut(s)	348, 593
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	2 cut(s)	348, 593
GluI	GCNGC	2 cut(s)	348, 593
GsaI	CCCAGC	1 cut(s)	564
HapII	CCGG	2 cut(s)	120, 358
Hin1II	CATG	3 cut(s)	433, 532, 671
HinfI	GANTC	3 cut(s)	209, 319, 575
HpaII	CCGG	2 cut(s)	120, 358
HphI	GGTGA	2 cut(s)	83, 237
Hpy188I	TCNGA	5 cut(s)	132, 158, 228, 542, 580
Hpy188III	TCNNGA	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	73, 307, 622
HpyCH4III	ACNGT	1 cut(s)	651
HpyCH4IV	ACGT	1 cut(s)	497
HpyCH4V	TGCA	4 cut(s)	305, 418, 515, 694
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	44, 249, 569
HpySE526I	ACGT	1 cut(s)	497
Hsp92II	CATG	3 cut(s)	433, 532, 671
Kzo9I	GATC	2 cut(s)	18, 238
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	359, 579
LweI	GCATC	2 cut(s)	314, 411
MaeII	ACGT	1 cut(s)	497
MaeIII	GTNAC	2 cut(s)	397, 572
MalI	GATC	2 cut(s)	20, 240
MboI	GATC	2 cut(s)	18, 238
MboII	GAAGA	3 cut(s)	18, 300, 461
MluCI	AATT	2 cut(s)	509, 677
MlyI	GAGTC	2 cut(s)	328, 569
MmeI	TCCRAC	2 cut(s)	186, 315
MnlI	CCTC	9 cut(s)	22, 37, 53, 222, 244, 284, 377, 458, 536
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	2 cut(s)	120, 358
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	18, 238
NlaIII	CATG	3 cut(s)	433, 532, 671
NmuCI	GTSAC	2 cut(s)	397, 572
NspV	TTCGAA	1 cut(s)	675
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	349, 594
PleI	GAGTC	2 cut(s)	327, 569
PpsI	GAGTC	2 cut(s)	327, 569
PsiI	TTATAA	1 cut(s)	456
PspFI	CCCAGC	1 cut(s)	560
PsrI	GAACNNNNNNTAC	2 cut(s)	460, 492
RsaI	GTAC	3 cut(s)	81, 555, 635
RsaNI	GTAC	3 cut(s)	80, 554, 634
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	2 cut(s)	348, 593
Sau3AI	GATC	2 cut(s)	18, 238
SchI	GAGTC	2 cut(s)	328, 569
ScrFI	CCNGG	1 cut(s)	120
SfaNI	GCATC	2 cut(s)	314, 411
SfuI	TTCGAA	1 cut(s)	675
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	13, 411, 471
SmoI	CTYRAG	3 cut(s)	13, 411, 471
Sse9I	AATT	2 cut(s)	509, 677
SsiI	CCGC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	651
TaiI	ACGT	1 cut(s)	500
TaqI	TCGA	1 cut(s)	675
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	509, 677
TatI	WGTACW	1 cut(s)	553
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	445, 577, 705
TseFI	GTSAC	2 cut(s)	397, 572
TseI	GCWGC	2 cut(s)	347, 592
Tsp45I	GTSAC	2 cut(s)	397, 572
TspDTI	ATGAA	2 cut(s)	326, 522
TspRI	CASTG	3 cut(s)	445, 577, 705
XapI	RAATTY	2 cut(s)	509, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.