Rh5AG078200

ATP synthase mitochondrial F1 complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0008757
Physical Location & Seq
Forward (+)
6703851 .. 6705889
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG078200.1

Sequence Viewer

Length: 744 bp
ATGCGAAGAGCCTCAAGGATCATTACCTCATCAGCTTCAAACCTCAGCCACCGCGCTTCATCTAGTTTTGCTCACCCCAAACACTCCTTCACTCCTTTGTTTGTACCACAAAATCACCAAAACCCAGAAACGCAATCGCTTCCCGGTGGTTTTCTGAAATGGGGTTCGCTTGGTTCGGTCAGAGCTTCAAGTTTTGCTTCTGGGTTCTCGCCCTTGAAGCCCAAGCCGTTGGATTCCATTATTGACATTCAGAGGGTTAAGGATCGCTCACCCGAGGACATTGCTTCGGCTTGGGACGATTATCACTTGGGAAGAGGACATATTGGTGCATCAATGAAGGCGAGTCTGTATCACTTGTTGGAGCATAGAGCAGCAGATTGCCGGTATTTTGTCATTCCTTTGTGGAGAGGGAGTGGTTATGTCACAATGTTCGCTCAAGTGCAGATGCCACACATGATTTTCACTGGTCTTGAAGATTATAAGGCAAGAGGAACTCAAGCTACTCCCTACTTCACTATGACGTATTACAATGAATTTGCACAAAGCAAGGACATGGTGCTTATCCGAGGCGATGTTGTACTTCCCAGCAAGCTCAGTGACTCGGAAGCAAAATGGCTGCTGGAGACCGCCCAAACCTTCTATTTGAATGATGTCAGGTACAAGTTGGTTGAACGGTTCAACAAACAAACACATGATTTCGAATTCAAGGATGTCTTGCAAGCACTGGATATGCCCAATCTGTGA

Protein Analysis

247

Amino Acids

28.08

Weight (kDa)

9.08

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP11 PF06644 70 - 238 7.7e-38 ATP11 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 480
AccII CGCG 1 cut(s) 54
AciI CCGC 2 cut(s) 52, 627
AclWI GGATC 2 cut(s) 26, 270
AcsI RAATTY 2 cut(s) 533, 701
AfaI GTAC 3 cut(s) 105, 579, 659
AgsI TTSAA 8 cut(s) 39, 189, 217, 473, 646, 671, 679, 706
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 4 cut(s) 35, 185, 500, 592
AluI AGCT 4 cut(s) 35, 185, 500, 592
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 26, 270
Ama87I CYCGRG 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 371, 616
ApoI RAATTY 2 cut(s) 533, 701
AspLEI GCGC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 65, 107, 261
AsuII TTCGAA 1 cut(s) 699
AvaI CYCGRG 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 383, 603
BceAI ACGGC 1 cut(s) 211
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BcnI CCSGG 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 63
BisI GCNGC 2 cut(s) 372, 617
BlsI GCNGC 2 cut(s) 373, 618
Bme1390I CCNGG 1 cut(s) 144
BmeT110I CYCGRG 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 2 cut(s) 338, 435
BpmI CTGGAG 1 cut(s) 641
Bpu10I CCTNAGC 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 420, 480
BpuMI CCSGG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 617
BsaJI CCNNGG 2 cut(s) 273, 565
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 469, 729
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 273, 565
BseGI GGATG 1 cut(s) 715
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 2 cut(s) 58, 607
BseNI ACTGG 2 cut(s) 469, 729
BseXI GCAGC 2 cut(s) 383, 603
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 461
Bsh1236I CGCG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 144, 382
BslFI GGGAC 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 617
BsoBI CYCGRG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 699
Bsp143I GATC 2 cut(s) 18, 262
BspACI CCGC 2 cut(s) 52, 627
BspCNI CTCAG 2 cut(s) 57, 606
BspFNI CGCG 1 cut(s) 54
BspPI GGATC 2 cut(s) 26, 270
BspT104I TTCGAA 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 469, 729
BssAI RCCGGY 1 cut(s) 381
BssECI CCNNGG 2 cut(s) 273, 565
BssMI GATC 2 cut(s) 18, 262
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 1 cut(s) 307
BstBI TTCGAA 1 cut(s) 699
BstC8I GCNNGC 2 cut(s) 590, 720
BstDEI CTNAG 2 cut(s) 44, 593
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 54
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 21, 265
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 18, 262
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 142
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 383, 603
BstXI CCANNNNNNTGG 1 cut(s) 229
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 3 cut(s) 462, 601, 722
Cac8I GCNNGC 2 cut(s) 590, 720
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 3 cut(s) 104, 578, 658
CviAII CATG 3 cut(s) 454, 553, 692
CviQI GTAC 3 cut(s) 104, 578, 658
DdeI CTNAG 2 cut(s) 44, 593
DpnI GATC 2 cut(s) 20, 264
DpnII GATC 2 cut(s) 18, 262
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 617
Eco88I CYCGRG 1 cut(s) 272
EcoRI GAATTC 1 cut(s) 701
FaeI CATG 3 cut(s) 457, 556, 695
FaiI YATR 9 cut(s) 321, 366, 420, 455, 480, 518, 554, 693, 731
FalI AAGNNNNNCTT 4 cut(s) 181, 213, 698, 730
FaqI GGGAC 1 cut(s) 308
FatI CATG 3 cut(s) 453, 552, 691
Fnu4HI GCNGC 2 cut(s) 372, 617
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 2 cut(s) 372, 617
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 372, 617
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 641
HapII CCGG 2 cut(s) 144, 382
HhaI GCGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 457, 556, 695
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 233, 343, 599
HpaII CCGG 2 cut(s) 144, 382
HphI GGTGA 3 cut(s) 65, 107, 261
Hpy188I TCNGA 5 cut(s) 156, 182, 252, 566, 604
Hpy188III TCNNGA 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 97, 331, 646
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 329, 442, 539, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpyF3I CTNAG 2 cut(s) 44, 593
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 3 cut(s) 457, 556, 695
HspAI GCGC 1 cut(s) 54
Kzo9I GATC 2 cut(s) 18, 262
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 9 cut(s) 138, 157, 186, 395, 450, 598, 605, 640, 710
Lsp1109I GCAGC 2 cut(s) 383, 603
LweI GCATC 2 cut(s) 338, 435
MaeI CTAG 1 cut(s) 63
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 421, 596
MalI GATC 2 cut(s) 20, 264
MboI GATC 2 cut(s) 18, 262
MboII GAAGA 3 cut(s) 18, 324, 485
MluCI AATT 2 cut(s) 533, 701
MlyI GAGTC 2 cut(s) 352, 593
MmeI TCCRAC 2 cut(s) 210, 339
MnlI CCTC 9 cut(s) 22, 37, 53, 246, 268, 308, 401, 482, 560
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 2 cut(s) 144, 382
MspR9I CCNGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 1 cut(s) 217
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 18, 262
NlaIII CATG 3 cut(s) 457, 556, 695
NmuCI GTSAC 2 cut(s) 421, 596
NspV TTCGAA 1 cut(s) 699
PfeI GAWTC 1 cut(s) 233
PkrI GCNGC 2 cut(s) 373, 618
PleI GAGTC 2 cut(s) 351, 593
PpsI GAGTC 2 cut(s) 351, 593
PsiI TTATAA 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 584
PsrI GAACNNNNNNTAC 2 cut(s) 484, 516
RsaI GTAC 3 cut(s) 105, 579, 659
RsaNI GTAC 3 cut(s) 104, 578, 658
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 2 cut(s) 372, 617
Sau3AI GATC 2 cut(s) 18, 262
SchI GAGTC 2 cut(s) 352, 593
ScrFI CCNGG 1 cut(s) 144
SetI ASST 9 cut(s) 29, 37, 45, 187, 502, 524, 594, 638, 659
SfaNI GCATC 2 cut(s) 338, 435
SfuI TTCGAA 1 cut(s) 699
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 3 cut(s) 13, 435, 495
SmoI CTYRAG 3 cut(s) 13, 435, 495
Sse9I AATT 2 cut(s) 533, 701
SsiI CCGC 2 cut(s) 52, 627
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 1 cut(s) 524
TaqI TCGA 1 cut(s) 699
TaqII GACCGA 1 cut(s) 166
TasI AATT 2 cut(s) 533, 701
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 469, 601, 729
TseFI GTSAC 2 cut(s) 421, 596
TseI GCWGC 2 cut(s) 371, 616
Tsp45I GTSAC 2 cut(s) 421, 596
TspDTI ATGAA 3 cut(s) 48, 350, 546
TspRI CASTG 3 cut(s) 469, 601, 729
XapI RAATTY 2 cut(s) 533, 701
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.