Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008757

Physical Location & Seq

Genomic Coordinates Reverse (-)

25833575 .. 25835412

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCGAAGAGCTTCCAGGATCTTTACGCTTCCAGCTTCAAACCTCATCGGCCATTCTTCTTCTTCTGCTGGCGCTGTGCACAAACACTCCTTCACAACTCTGACCCTGCAACAAAATCGCCAAAACCCACAACAGCAATCGTTTCCGGGAGGATTTCTGAAATGGGGTTCGCTGGGTTTCTTCAGGGCTTCGAGTTTTGCTACTGGGTTCAATCCCTTGAAGGCTAAGCCGTTGGATTCCATTATTGATGTCGAGAGGGTGAAAGATCGCTCGGCCGAGGACATCGCTTCGGCTTGGGACGATTTTCACCTGGGAAGAGGTCATATCGGTGCATCCATGAATGCAAAACTATATCACCTGTTGGAGCATAGAGCGGCAGATTGCCGGTATTTTGTCATTCCCTTGTGGAGAGGAAGTGGTTATACCACAATGTTTGCTCAAGTACAGATGCCACACATGATTTTCACTGGTCTTGAAGATTACAAGGCGAGGGGAACTCAAGCTTCTCCCTACTTCGCTGTAACTTACTACAACGAATTTGCAGAAAGCAAGGACATGGTGCTTATTCGAGGGGATGTCGTACTCCCCAGCAAACTCACTGACTCGGAGGCAAAATGGCTTGTGGAGACCACCCAATCATTTTATTTGAACGACATGAGGTATAAGCTGGTCGAACGGTTCAACAAACAAACACACGATTTTGAGTTCAAGGATGTCTTGCAAGCATTAGAAATGCCGATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0033615 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043461 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0070071 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP11

Protein Analysis

249

Amino Acids

28.25

Weight (kDa)

8.89

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008757)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34050
fragaria_vesca	FvH4_3g08250 FvH4_7g02080
malus_domestica	MD05G1306300.v1.1 MD10G1285300.v1.1
prunus_persica	Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1 Prupe.4G056300_v2.0.a1
pyrus_communis	pycom05g28340 pycom10g23840
rosa_chinensis	RchiOBHm_Chr5g0009901
rosa_laevigata	RLG00000031707
rosa_multiflora	Rmu_sc0001709.1_g000017
rosa_roxburghii	Rroxscaffold_1G00066310
rosa_rugosa	Rorug04G0446600
rosa_samantha	Rh5AG078200 Rh5BG073100 Rh5CG085500 Rh5DG073600
rosa_wichuraiana	Rw5G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	374
AciI	CCGC	1 cut(s)	374
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	2 cut(s)	49, 273
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	2 cut(s)	444, 582
AgsI	TTSAA	7 cut(s)	39, 211, 220, 476, 649, 682, 709
AjnI	CCWGG	2 cut(s)	14, 309
AluBI	AGCT	4 cut(s)	11, 35, 503, 667
AluI	AGCT	4 cut(s)	11, 35, 503, 667
Alw21I	GWGCWC	1 cut(s)	81
Alw26I	GTCTC	1 cut(s)	620
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	49, 273
ApaLI	GTGCAC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	536
Asp700I	GAANNNNTTC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	3 cut(s)	271, 299, 347
BaeGI	GKGCMC	1 cut(s)	81
BarI	GAAGNNNNNNTAC	2 cut(s)	406, 438
Bbv12I	GWGCWC	1 cut(s)	81
BceAI	ACGGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	16, 311
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	620
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	16, 147, 311
BmrFI	CCNGG	3 cut(s)	16, 147, 311
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	341, 438
BmuI	ACTGGG	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	481, 513
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	423, 483
BpuMI	CCSGG	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	2 cut(s)	276, 310
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 400, 430
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	208, 472
BseBI	CCWGG	2 cut(s)	16, 311
BseDI	CCNNGG	2 cut(s)	276, 310
BseGI	GGATG	3 cut(s)	332, 580, 718
BseNI	ACTGG	2 cut(s)	208, 472
BseSI	GKGCMC	1 cut(s)	81
BseX3I	CGGCCG	1 cut(s)	273
BseYI	CCCAGC	2 cut(s)	172, 587
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	51, 275
BsiEI	CGRYCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	146, 385
BslFI	GGGAC	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	51, 275
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	18, 265
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	374
BspANI	GGCC	2 cut(s)	51, 275
BspPI	GGATC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	620
BsrBI	CCGCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	208, 472
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	276, 310
BssMI	GATC	2 cut(s)	18, 265
Bst2UI	CCWGG	2 cut(s)	16, 311
Bst4CI	ACNGT	1 cut(s)	678
Bst6I	CTCTTC	1 cut(s)	310
BstC8I	GCNNGC	2 cut(s)	70, 723
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	3 cut(s)	332, 580, 718
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	2 cut(s)	21, 268
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	2 cut(s)	18, 265
BstMCI	CGRYCG	1 cut(s)	276
BstNI	CCWGG	2 cut(s)	16, 311
BstSCI	CCNGG	3 cut(s)	14, 145, 309
BstSLI	GKGCMC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	18
BstZI	CGGCCG	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	51, 275
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	3 cut(s)	332, 580, 718
BtsIMutI	CAGTG	2 cut(s)	465, 597
Cac8I	GCNNGC	2 cut(s)	70, 723
CfoI	GCGC	1 cut(s)	74
Cfr10I	RCCGGY	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	443, 581
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviAII	CATG	4 cut(s)	337, 457, 556, 655
CviQI	GTAC	2 cut(s)	443, 581
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	2 cut(s)	20, 267
DpnII	GATC	2 cut(s)	18, 265
EaeI	YGGCCR	2 cut(s)	49, 273
EagI	CGGCCG	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
EclXI	CGGCCG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	620
Eco52I	CGGCCG	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	166
EcoRII	CCWGG	2 cut(s)	14, 309
FaeI	CATG	4 cut(s)	340, 460, 559, 658
FaiI	YATR	9 cut(s)	324, 338, 352, 369, 423, 458, 557, 656, 663
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	4 cut(s)	336, 456, 555, 654
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	3 cut(s)	319, 587, 725
Fsp4HI	GCNGC	1 cut(s)	375
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	375
GsaI	CCCAGC	2 cut(s)	176, 591
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	51, 275
HapII	CCGG	2 cut(s)	146, 385
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	4 cut(s)	340, 460, 559, 658
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	3 cut(s)	236, 602, 739
HpaII	CCGG	2 cut(s)	146, 385
HphI	GGTGA	3 cut(s)	271, 299, 347
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	102, 159, 607
Hpy188III	TCNNGA	2 cut(s)	253, 473
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	100, 214
HpyCH4III	ACNGT	1 cut(s)	678
HpyCH4V	TGCA	6 cut(s)	79, 109, 332, 344, 542, 721
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	4 cut(s)	340, 460, 559, 658
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	18, 265
LmnI	GCTCC	1 cut(s)	364
LweI	GCATC	2 cut(s)	341, 438
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	2 cut(s)	20, 267
MbiI	CCGCTC	1 cut(s)	374
MboI	GATC	2 cut(s)	18, 265
MboII	GAAGA	7 cut(s)	18, 48, 51, 54, 172, 327, 488
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	2 cut(s)	213, 342
MroXI	GAANNNNTTC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	2 cut(s)	146, 385
MspR9I	CCNGG	3 cut(s)	16, 147, 311
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	16, 311
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	18, 265
NlaIII	CATG	4 cut(s)	340, 460, 559, 658
NmeAIII	GCCGAG	2 cut(s)	251, 301
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	236, 739
PfoI	TCCNGGA	2 cut(s)	14, 145
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	596
PpsI	GAGTC	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	14, 309
PspFI	CCCAGC	2 cut(s)	172, 587
PspGI	CCWGG	2 cut(s)	14, 309
PsuI	RGATCY	1 cut(s)	18
RsaI	GTAC	2 cut(s)	444, 582
RsaNI	GTAC	2 cut(s)	443, 581
RseI	CAYNNNNRTG	1 cut(s)	327
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	2 cut(s)	18, 265
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	3 cut(s)	16, 147, 311
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	9 cut(s)	13, 37, 45, 312, 322, 360, 505, 662, 669
SfaNI	GCATC	2 cut(s)	341, 438
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	438, 498
SmoI	CTYRAG	2 cut(s)	438, 498
Sse9I	AATT	1 cut(s)	536
SsiI	CCGC	1 cut(s)	374
StyD4I	CCNGG	3 cut(s)	14, 145, 309
TaaI	ACNGT	1 cut(s)	678
TaqI	TCGA	4 cut(s)	191, 252, 568, 672
TasI	AATT	1 cut(s)	536
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	2 cut(s)	236, 739
TscAI	CASTG	2 cut(s)	472, 604
TspDTI	ATGAA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	472, 604
VneI	GTGCAC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.