AT2G34110

3'-5' exonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003549
Physical Location & Seq
Forward (+)
14392551 .. 14403317
10767 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34110.1

Sequence Viewer

Length: 372 bp
ATGAATGTCAAAGAAGAGAAACTGATGGAGGAGGAGCAACTATTGCCGGAGAAGACGATCCTTGTGTTCACCATTCTGAAAAATGGCGCGATTCTCGAGAACATCTTCGTTGTGAACAGTCGCGATTTCTCGTCGCCGGAGAGAAACGGTTCCACTGTGTGCGATGATGACGACGGAGTAGAAGAGATTCTTGTCGTCGGTGGATTTTTGATGCAGCATCCATGGAGTTCCACGGTAGATAATGGAATTGATGGTGACTATGTGAAACTTTTCCATGAGTATGGAGTTTCCATTAAAGATGTAGAGAATCTGTCGGATTTACCCAACCGAAAAATTGGTGGAGATTTGAAAAATGGGGTCTTGCCGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000019 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000738 GO:0000781 GO:0001302 GO:0001325 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003723 GO:0003729 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006284 GO:0006302 GO:0006308 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008156 GO:0008296 GO:0008297 GO:0008309 GO:0008310 GO:0008311 GO:0008408 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010941 GO:0015630 GO:0016020 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016796 GO:0016817 GO:0016818 GO:0016887 GO:0016895 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022607 GO:0030145 GO:0031297 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0040008 GO:0040009 GO:0042162 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045910 GO:0045911 GO:0045934 GO:0045935 GO:0045950 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0061849 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0090656 GO:0090657 GO:0090737 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902570 GO:1905773 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04390 ko04391 ko04530 ko05165 map04390 map04391 map04530 map05165
Pfam Domains
Protein Families
DEAD DNA_pol_A_exo1 FHA HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind dsrm

Protein Analysis

123

Amino Acids

13.72

Weight (kDa)

4.46

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 89, 123
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 52
AdeI CACNNNGTG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 349
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 214
Asp700I GAANNNNTTC 4 cut(s) 104, 148, 186, 269
AspLEI GCGC 1 cut(s) 89
AsuHPI GGTGA 2 cut(s) 61, 266
AvaI CYCGRG 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 19, 245
BisI GCNGC 2 cut(s) 215, 365
BlsI GCNGC 2 cut(s) 216, 366
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 2 cut(s) 201, 226
BpiI GAAGAC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 221, 231
BseDI CCNNGG 2 cut(s) 221, 231
BseGI GGATG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 44, 47
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 2 cut(s) 89, 123
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 47, 137
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 57
Bsp19I CCATGG 1 cut(s) 221
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 365
BspFNI CGCG 2 cut(s) 89, 123
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 221, 231
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 4 cut(s) 119, 149, 157, 235
Bst6I CTCTTC 2 cut(s) 9, 177
BstAPI GCANNNNNTGC 1 cut(s) 43
BstDSI CCRYGG 2 cut(s) 221, 231
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 2 cut(s) 89, 123
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 60
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstUI CGCG 2 cut(s) 89, 123
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 59
BstXI CCANNNNNNTGG 1 cut(s) 281
BtgI CCRYGG 2 cut(s) 221, 231
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 153
BtuMI TCGCGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 89
CviAII CATG 2 cut(s) 222, 275
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DraIII CACNNNGTG 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 9, 177
EarI CTCTTC 2 cut(s) 9, 177
Eco130I CCWWGG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 2 cut(s) 225, 278
FaiI YATR 4 cut(s) 223, 261, 276, 282
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 2 cut(s) 221, 274
Fnu4HI GCNGC 2 cut(s) 215, 365
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 215, 365
GlaI GCGC 1 cut(s) 88
GluI GCNGC 2 cut(s) 215, 365
HapII CCGG 2 cut(s) 47, 137
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 225, 278
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 3 cut(s) 91, 187, 307
HpaII CCGG 2 cut(s) 47, 137
HphI GGTGA 2 cut(s) 61, 266
Hpy166II GTNNAC 2 cut(s) 69, 115
Hpy188I TCNGA 2 cut(s) 78, 316
Hpy188III TCNNGA 3 cut(s) 95, 97, 122
Hpy8I GTNNAC 2 cut(s) 69, 115
Hpy99I CGWCG 3 cut(s) 136, 176, 200
HpyCH4III ACNGT 4 cut(s) 119, 149, 157, 235
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 225, 278
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 2 cut(s) 60, 150
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 201, 226
MaeIII GTNAC 1 cut(s) 254
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 4 cut(s) 26, 64, 97, 194
MluCI AATT 2 cut(s) 246, 333
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 2 cut(s) 22, 25
MroXI GAANNNNTTC 4 cut(s) 104, 148, 186, 269
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 2 cut(s) 47, 137
MvnI CGCG 2 cut(s) 89, 123
MwoI GCNNNNNNNGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 221
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 225, 278
NlaIV GGNNCC 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 254
NruI TCGCGA 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 95
PdmI GAANNNNTTC 4 cut(s) 104, 148, 186, 269
PfeI GAWTC 3 cut(s) 91, 187, 307
PkrI GCNGC 2 cut(s) 216, 366
PspN4I GGNNCC 1 cut(s) 151
RruI TCGCGA 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 279
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 215, 365
Sau3AI GATC 1 cut(s) 57
SfaNI GCATC 2 cut(s) 201, 226
Sfr274I CTCGAG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 2 cut(s) 246, 333
SsiI CCGC 1 cut(s) 365
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 4 cut(s) 119, 149, 157, 235
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 246, 333
TauI GCSGC 1 cut(s) 367
TfiI GAWTC 3 cut(s) 91, 187, 307
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 189
TspRI CASTG 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 95
XmnI GAANNNNTTC 4 cut(s) 104, 148, 186, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.