Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003549

Physical Location & Seq

Genomic Coordinates Reverse (-)

13283614 .. 13289249

Gene Structure 5636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G164900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAGGAGAAGTCGCAATCCCTGGAAAACAAAAGCAAAAGCAAGAAGACCATCTTATCGGAATTGGAGTTGGACGACGAGCCCTTCACAGAAGAAGACCTCCAAGCCATTGAAGCCGCATTCGAAGCTGCCACTTCTTCCTCTCTCCCCAAAAAGCGACGGCCCAGCCCATACGACGACTCCGACGGCGACGATAAAACCCAACAACACCACTGCAGGATTGCCCGCCGCCGCCTGCCCAGTTCAGTTCTCGCTCTCCAGCATCCAAACGCATTCTCTCTCTCCCCTTGTCGTCAAGCAGCCAATATAAGGATGAGATATCCTGTGATGAAGTTTGGAGGTCAGATTACATATAGCAGGACTGCAGTTCAAGTAGAGAAAGCTGCCATGGAGGTTCTAAAGATTATTGAAGCAAAGGAAAAACAAGCGGGCCAAACTGCAGTTGGATTTGACATTGAGTGGAGACCCACATTCCAAAGAGGTGTTCCACCTAGGAAGGCTGCGGTTATGCAGATATGTGTAGACACAAGTTGTTGTCACGTGATGCATATTGTTCATTCTGGGATTCCTCAAAGTCTGCAGTTACTTCTCGAAGATGCATCAATTTTGAAGGTTGGACTTGGCATTGCCGGTGATTCTGTTAAGGTTTTTAAAGATTATAATGTCTCTACTAAAGCTGTTGAAGATCTTAAATATCTAGCTAAACGAAAGCTTGGTGGAGGTCTGCAGAACTGGGGTCTTGCATCTCTTACTGAGAAGCTAATATGCAAACAGCTTTTGAAACCCAACAAAATTAGATTGGGAAACTGGGAGGCCAAGTTTTTATCAAAGGAGCAGTTGGAGTATGCTGCTATTGATGCATTCACATCATGGCATCTGTATGAGGTGTTAAAGAGCCTCCCTAATGCTGAAAAAGTTACACCTGACAATCAGAGTGAGGAACTGCAAGCTGTATCATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

321

Amino Acids

35.74

Weight (kDa)

8.39

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34110 AT4G13870 AT4G13870 AT4G13885
fragaria_vesca	FvH4_4g13310 FvH4_4g13310
malus_domestica	MD05G1230400.v1.1
prunus_persica	Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1
pyrus_communis	pycom04g01340
rosa_chinensis	RchiOBHm_Chr4g0413601
rosa_laevigata	RLG00000008207
rosa_roxburghii	Rroxscaffold_1G00029650 Rroxscaffold_3G00236750 Rroxscaffold_3G00240660 Rroxscaffold_5G00357530
rosa_rugosa	Rorug04G0121400
rosa_samantha	Rh4AG181100 Rh4BG180300 Rh4CG192200 Rh4DG176400
rosa_wichuraiana	Rw4G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	6 cut(s)	117, 226, 229, 232, 428, 503
AcvI	CACGTG	1 cut(s)	541
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	6 cut(s)	113, 371, 410, 610, 683, 781
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	8 cut(s)	128, 383, 677, 701, 712, 760, 775, 950
AluI	AGCT	8 cut(s)	128, 383, 677, 701, 712, 760, 775, 950
Alw26I	GTCTC	2 cut(s)	457, 670
AoxI	GGCC	3 cut(s)	161, 430, 813
ApeKI	GCWGC	5 cut(s)	128, 299, 383, 500, 848
AspA2I	CCTAGG	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	162, 430
AsuHPI	GGTGA	1 cut(s)	644
AsuII	TTCGAA	1 cut(s)	123
AvrII	CCTAGG	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	84
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	53, 102
BbvI	GCAGC	5 cut(s)	115, 311, 370, 487, 835
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	2 cut(s)	176, 202
BciT130I	CCWGG	1 cut(s)	23
BcoDI	GTCTC	2 cut(s)	457, 670
BfaI	CTAG	2 cut(s)	492, 698
BfmI	CTRYAG	5 cut(s)	214, 363, 438, 578, 725
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	8 cut(s)	117, 129, 229, 232, 300, 384, 501, 849
BlnI	CCTAGG	1 cut(s)	491
BlsI	GCNGC	8 cut(s)	118, 130, 230, 233, 301, 385, 502, 850
Bme1390I	CCNGG	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	162, 430
BmrFI	CCNGG	1 cut(s)	23
BmrI	ACTGGG	3 cut(s)	234, 742, 817
BmsI	GCATC	7 cut(s)	271, 534, 586, 608, 752, 847, 883
BmuI	ACTGGG	3 cut(s)	234, 742, 817
BpiI	GAAGAC	2 cut(s)	53, 102
BpmI	CTGGAG	1 cut(s)	242
Bpu14I	TTCGAA	1 cut(s)	123
BsaAI	YACGTR	1 cut(s)	541
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	3 cut(s)	21, 387, 491
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 164, 194, 803, 833
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	3 cut(s)	240, 737, 812
Bse3DI	GCAATG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	3 cut(s)	21, 387, 491
BseGI	GGATG	2 cut(s)	262, 318
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	624
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	3 cut(s)	240, 737, 812
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	115, 311, 370, 487, 835
BseYI	CCCAGC	1 cut(s)	164
BshFI	GGCC	3 cut(s)	163, 432, 815
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	457, 670
BsmI	GAATGC	3 cut(s)	119, 272, 860
BsnI	GGCC	3 cut(s)	163, 432, 815
Bso31I	GGTCTC	1 cut(s)	457
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	685
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	6 cut(s)	117, 226, 229, 232, 428, 503
BspANI	GGCC	3 cut(s)	163, 432, 815
BspCNI	CTCAG	1 cut(s)	745
BspMAI	CTGCAG	5 cut(s)	218, 367, 442, 582, 729
BspT104I	TTCGAA	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	240, 737, 812
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	3 cut(s)	21, 387, 491
BssMI	GATC	1 cut(s)	685
BssT1I	CCWWGG	2 cut(s)	387, 491
Bst2UI	CCWGG	1 cut(s)	23
BstBAI	YACGTR	1 cut(s)	541
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	4 cut(s)	226, 236, 430, 948
BstDEI	CTNAG	1 cut(s)	753
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	262, 318
BstKTI	GATC	1 cut(s)	688
BstMAI	GTCTC	2 cut(s)	457, 670
BstMBI	GATC	1 cut(s)	685
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 125, 857
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	5 cut(s)	214, 363, 438, 578, 725
BstV1I	GCAGC	5 cut(s)	115, 311, 370, 487, 835
BstV2I	GAAGAC	2 cut(s)	53, 102
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	3 cut(s)	163, 432, 815
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	262, 318
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	226, 236, 430, 948
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	162, 430
CviAII	CATG	2 cut(s)	388, 870
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	1 cut(s)	687
DpnII	GATC	1 cut(s)	685
DraI	TTTAAA	1 cut(s)	652
Eco130I	CCWWGG	2 cut(s)	387, 491
Eco24I	GRGCYC	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	457
Eco32I	GATATC	1 cut(s)	320
Eco72I	CACGTG	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	21
EcoRV	GATATC	1 cut(s)	320
EcoT14I	CCWWGG	2 cut(s)	387, 491
EcoT22I	ATGCAT	3 cut(s)	549, 601, 862
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	2 cut(s)	387, 491
FaeI	CATG	2 cut(s)	391, 873
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	2 cut(s)	387, 869
FauI	CCCGC	2 cut(s)	233, 421
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	8 cut(s)	117, 129, 229, 232, 300, 384, 501, 849
FokI	GGATG	2 cut(s)	249, 325
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	8 cut(s)	117, 129, 229, 232, 300, 384, 501, 849
FspBI	CTAG	2 cut(s)	492, 698
GluI	GCNGC	8 cut(s)	117, 129, 229, 232, 300, 384, 501, 849
GsaI	CCCAGC	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	163, 432, 815
HapII	CCGG	1 cut(s)	630
Hin1II	CATG	2 cut(s)	391, 873
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	3 cut(s)	179, 565, 635
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	61, 184, 345, 933
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	5 cut(s)	80, 162, 179, 188, 194
HpyAV	CCTTC	3 cut(s)	94, 490, 604
HpyCH4IV	ACGT	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 125, 857
HpyF3I	CTNAG	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	2 cut(s)	391, 873
Kzo9I	GATC	1 cut(s)	685
LmnI	GCTCC	1 cut(s)	832
Lsp1109I	GCAGC	5 cut(s)	115, 311, 370, 487, 835
LweI	GCATC	7 cut(s)	271, 534, 586, 608, 752, 847, 883
MaeI	CTAG	2 cut(s)	492, 698
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	3 cut(s)	536, 582, 916
MalI	GATC	1 cut(s)	687
MboI	GATC	1 cut(s)	685
MboII	GAAGA	6 cut(s)	58, 104, 107, 129, 605, 695
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	62, 603, 792
MlyI	GAGTC	1 cut(s)	173
MmeI	TCCRAC	5 cut(s)	51, 207, 424, 595, 819
Mph1103I	ATGCAT	3 cut(s)	549, 601, 862
MseI	TTAA	4 cut(s)	642, 651, 690, 890
MslI	CAYNNNNRTG	1 cut(s)	879
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	23
Mva1269I	GAATGC	3 cut(s)	119, 272, 860
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	113, 125, 857
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	1 cut(s)	685
NlaIII	CATG	2 cut(s)	391, 873
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	3 cut(s)	549, 601, 862
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	3 cut(s)	119, 272, 860
PfeI	GAWTC	2 cut(s)	565, 635
PkrI	GCNGC	8 cut(s)	118, 130, 230, 233, 301, 385, 502, 850
PleI	GAGTC	1 cut(s)	173
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	173
Ppu21I	YACGTR	1 cut(s)	541
PsiI	TTATAA	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	162, 430
PstI	CTGCAG	5 cut(s)	218, 367, 442, 582, 729
PsuI	RGATCY	1 cut(s)	685
RseI	CAYNNNNRTG	1 cut(s)	879
SaqAI	TTAA	4 cut(s)	642, 651, 690, 890
SatI	GCNGC	8 cut(s)	117, 129, 229, 232, 300, 384, 501, 849
Sau3AI	GATC	1 cut(s)	685
Sau96I	GGNCC	2 cut(s)	162, 430
SchI	GAGTC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	84
SfaNI	GCATC	7 cut(s)	271, 534, 586, 608, 752, 847, 883
SfcI	CTRYAG	5 cut(s)	214, 363, 438, 578, 725
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	879
Sse9I	AATT	3 cut(s)	62, 603, 792
SsiI	CCGC	6 cut(s)	117, 226, 229, 232, 428, 503
SspMI	CTAG	2 cut(s)	492, 698
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	2 cut(s)	387, 491
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	2 cut(s)	123, 591
TasI	AATT	3 cut(s)	62, 603, 792
TauI	GCSGC	3 cut(s)	119, 231, 234
TfiI	GAWTC	2 cut(s)	565, 635
Tru1I	TTAA	4 cut(s)	642, 651, 690, 890
Tru9I	TTAA	4 cut(s)	642, 651, 690, 890
TscAI	CASTG	1 cut(s)	218
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	5 cut(s)	128, 299, 383, 500, 848
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	2 cut(s)	344, 545
TspRI	CASTG	1 cut(s)	218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440
XmaJI	CCTAGG	1 cut(s)	491
XmiI	GTMKAC	1 cut(s)	522
XspI	CTAG	2 cut(s)	492, 698
Zsp2I	ATGCAT	3 cut(s)	549, 601, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.