AT4G13885

3'-5' exonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003549
Physical Location & Seq
Reverse (-)
8028911 .. 8030754
1844 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13885.1

Sequence Viewer

Length: 792 bp
ATGGATACAACTGAAGAGCTTAAAATCAGTCATTATAAGCTATACAAATGTTTTGATTTTTTAGTTGTTGCCAACAATAAAATTGAGGTTGCCCAAGCATTTGTGAAATACAGACGGCCTGAGTACTTTCTGCCATTAGTTGGAGTAGAGTTTGTCTCCCTGACATTAGTCGGAAAGCATTTCAAACTCGGGAAATATAGTGTGGTGGTCCTTCGAGGAGAAGTCCATTCTGAAACACTTCGGTGCCTTTTACCAAAACTGACCGATCAACCGATAGGAAGCTCGTTTCTTCTTCTTCGACCGTTCCGCGATGTTGGTAACTACTGTTTGTTGCTTCACATTCTTCCTTCGTCCAAGAAGTTTACTTTAGCTATGCAATTTCTGTGTGAGTTGATTGATTCGACATCTAAGGAAGAAGAAGATGTGTTCAGAGTTTTGGTTTATGCTAGTGATGAATTACTTGATGTCAAGACATACCGAGCTCTTATAGGCTGCTCTTGGGAGTTGTTTAGGTGTTCTCCTGGGGAAGGTTGCAACTGTCCAGATATGTGTAGACTCCAACATCTTATTGAGGATTCAACACTTGTAAAGGTAGGTATTGGAATTGATGGTGACTCTGTGAAGCTTTTCCATGACTATGGACTCTTGAAGCCAAACAGAATCAGGCTTGGGAACTGGGAGGTTCATCCTCTATCAAAGCAGCAGTTACAATACGCAGCAACGGATGCTTATGCTTCATGGCATCTTCACCAGGTTCTTAAGGACCTTCCTGATGCTGTCAGTGGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000018 GO:0000019 GO:0000217 GO:0000287 GO:0000400 GO:0000403 GO:0000405 GO:0000723 GO:0000724 GO:0000725 GO:0000731 GO:0000738 GO:0000781 GO:0001302 GO:0001325 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003682 GO:0003684 GO:0003824 GO:0004003 GO:0004386 GO:0004518 GO:0004527 GO:0004529 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005657 GO:0005694 GO:0005730 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006284 GO:0006302 GO:0006308 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006979 GO:0006996 GO:0007154 GO:0007275 GO:0007568 GO:0007569 GO:0008026 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008156 GO:0008296 GO:0008297 GO:0008309 GO:0008310 GO:0008311 GO:0008408 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009267 GO:0009314 GO:0009378 GO:0009411 GO:0009416 GO:0009605 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0009991 GO:0010212 GO:0010225 GO:0010259 GO:0010332 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010941 GO:0015630 GO:0016043 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016796 GO:0016817 GO:0016818 GO:0016887 GO:0016895 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0022607 GO:0030145 GO:0031297 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0031981 GO:0032200 GO:0032356 GO:0032357 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0040008 GO:0040009 GO:0042162 GO:0042592 GO:0042594 GO:0042623 GO:0042802 GO:0042803 GO:0042981 GO:0042995 GO:0043005 GO:0043067 GO:0043085 GO:0043138 GO:0043140 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0044806 GO:0044877 GO:0045005 GO:0045910 GO:0045911 GO:0045934 GO:0045935 GO:0045950 GO:0046483 GO:0046700 GO:0046872 GO:0046914 GO:0046983 GO:0048478 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051054 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051276 GO:0051336 GO:0051345 GO:0051641 GO:0051716 GO:0051880 GO:0060249 GO:0060255 GO:0060542 GO:0061749 GO:0061820 GO:0061821 GO:0061849 GO:0062037 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070336 GO:0070337 GO:0070727 GO:0071103 GO:0071214 GO:0071478 GO:0071479 GO:0071480 GO:0071496 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090329 GO:0090656 GO:0090657 GO:0090737 GO:0097159 GO:0097458 GO:0098530 GO:0098687 GO:0104004 GO:0120025 GO:0140097 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1902570 GO:1905773 GO:2000104 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DEAD DNA_pol_A_exo1 HRDC HTH_40 Helicase_C RQC RecQ_Zn_bind

Protein Analysis

263

Amino Acids

29.95

Weight (kDa)

6.5

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AccB1I GGYRCC 1 cut(s) 243
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 553
AccII CGCG 1 cut(s) 309
AciI CCGC 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 140, 527
AflII CTTAAG 1 cut(s) 758
AgsI TTSAA 3 cut(s) 184, 579, 649
AjnI CCWGG 2 cut(s) 520, 750
AleI CACNNNNGTG 1 cut(s) 241
AluBI AGCT 6 cut(s) 19, 40, 282, 371, 482, 625
AluI AGCT 6 cut(s) 19, 40, 282, 371, 482, 625
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 492, 700, 716
Asp700I GAANNNNTTC 2 cut(s) 237, 626
AspS9I GGNCC 2 cut(s) 208, 763
AsuHPI GGTGA 2 cut(s) 623, 740
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 2 cut(s) 208, 763
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 484
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 3 cut(s) 479, 712, 728
BccI CCATC 1 cut(s) 602
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 522, 752
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 758
BisI GCNGC 3 cut(s) 493, 701, 717
BlsI GCNGC 3 cut(s) 494, 702, 718
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 2 cut(s) 522, 752
Bme18I GGWCC 2 cut(s) 208, 763
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 208, 763
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 2 cut(s) 522, 752
BmrI ACTGGG 1 cut(s) 685
BmsI GCATC 3 cut(s) 715, 751, 763
BmuI ACTGGG 1 cut(s) 685
BoxI GACNNNNGTC 1 cut(s) 167
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 527
Bse1I ACTGG 1 cut(s) 680
BseBI CCWGG 2 cut(s) 522, 752
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 2 cut(s) 685, 730
BseLI CCNNNNNNNGG 2 cut(s) 140, 527
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 680
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 479, 712, 728
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 484
BsiHKCI CYCGRG 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 140, 527
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 307
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 112
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 758
BsrI ACTGG 1 cut(s) 680
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 522, 752
Bst4CI ACNGT 3 cut(s) 303, 326, 539
Bst6I CTCTTC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 725
BstDEI CTNAG 2 cut(s) 120, 408
BstENI CCTNNNNNAGG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 685, 730
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 725
BstNI CCWGG 2 cut(s) 522, 752
BstPAI GACNNNNGTC 1 cut(s) 167
BstSCI CCNGG 2 cut(s) 520, 750
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 479, 712, 728
BstXI CCANNNNNNTGG 1 cut(s) 638
BsuRI GGCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 2 cut(s) 685, 730
BtsIMutI CAGTG 1 cut(s) 787
Cfr13I GGNCC 2 cut(s) 208, 763
CsiI ACCWGGT 1 cut(s) 750
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 632, 738
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 120, 408
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 208, 763
Eco53kI GAGCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 525
EcoO109I RGGNCCY 1 cut(s) 763
EcoRII CCWGG 2 cut(s) 520, 750
EcoT38I GRGCYC 1 cut(s) 484
FaeI CATG 2 cut(s) 635, 741
FatI CATG 2 cut(s) 631, 737
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 493, 701, 717
FokI GGATG 2 cut(s) 672, 737
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 3 cut(s) 493, 701, 717
FspBI CTAG 1 cut(s) 447
GluI GCNGC 3 cut(s) 493, 701, 717
HaeIII GGCC 1 cut(s) 118
Hin1II CATG 2 cut(s) 635, 741
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 6 cut(s) 398, 555, 575, 614, 642, 660
HphI GGTGA 2 cut(s) 623, 740
Hpy166II GTNNAC 2 cut(s) 363, 554
Hpy188I TCNGA 3 cut(s) 173, 232, 431
Hpy188III TCNNGA 5 cut(s) 190, 469, 542, 646, 770
Hpy8I GTNNAC 2 cut(s) 363, 554
HpyAV CCTTC 4 cut(s) 221, 357, 521, 776
HpyCH4III ACNGT 3 cut(s) 303, 326, 539
HpyCH4V TGCA 2 cut(s) 376, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 725
HpyF3I CTNAG 2 cut(s) 120, 408
Hsp92II CATG 2 cut(s) 635, 741
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 479, 712, 728
LweI GCATC 3 cut(s) 715, 751, 763
MabI ACCWGGT 1 cut(s) 750
MaeI CTAG 1 cut(s) 447
MaeIII GTNAC 3 cut(s) 317, 611, 705
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 9 cut(s) 26, 281, 284, 287, 335, 425, 428, 431, 737
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 81, 377, 455, 603
MlyI GAGTC 3 cut(s) 549, 608, 636
MmeI TCCRAC 3 cut(s) 121, 151, 583
MnlI CCTC 5 cut(s) 79, 209, 565, 673, 699
MroXI GAANNNNTTC 2 cut(s) 237, 626
MseI TTAA 2 cut(s) 21, 759
MslI CAYNNNNRTG 2 cut(s) 241, 636
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 2 cut(s) 522, 752
MvaI CCWGG 2 cut(s) 522, 752
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 725
NdeII GATC 1 cut(s) 265
NlaIII CATG 2 cut(s) 635, 741
NlaIV GGNNCC 1 cut(s) 245
NmuCI GTSAC 1 cut(s) 611
OliI CACNNNNGTG 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 9
PdmI GAANNNNTTC 2 cut(s) 237, 626
PfeI GAWTC 3 cut(s) 398, 575, 660
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 3 cut(s) 494, 702, 718
PleI GAGTC 3 cut(s) 549, 608, 636
PpsI GAGTC 3 cut(s) 549, 608, 636
PpuMI RGGWCCY 1 cut(s) 763
PshAI GACNNNNGTC 1 cut(s) 167
PsiI TTATAA 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 520, 750
PspGI CCWGG 2 cut(s) 520, 750
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 208, 763
PspPPI RGGWCCY 1 cut(s) 763
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 241, 636
SacI GAGCTC 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 21, 759
SatI GCNGC 3 cut(s) 493, 701, 717
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 2 cut(s) 208, 763
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 3 cut(s) 549, 608, 636
ScrFI CCNGG 2 cut(s) 522, 752
SduI GDGCHC 1 cut(s) 484
SexAI ACCWGGT 1 cut(s) 750
SfaNI GCATC 3 cut(s) 715, 751, 763
SinI GGWCC 2 cut(s) 208, 763
SmiMI CAYNNNNRTG 2 cut(s) 241, 636
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 4 cut(s) 81, 377, 455, 603
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 447
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 520, 750
TaaI ACNGT 3 cut(s) 303, 326, 539
TaqI TCGA 3 cut(s) 214, 298, 401
TaqII GACCGA 1 cut(s) 278
TasI AATT 4 cut(s) 81, 377, 455, 603
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 3 cut(s) 398, 575, 660
Tru1I TTAA 2 cut(s) 21, 759
Tru9I TTAA 2 cut(s) 21, 759
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 611
TseI GCWGC 3 cut(s) 492, 700, 716
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 3 cut(s) 468, 674, 726
TspGWI ACGGA 1 cut(s) 737
TspRI CASTG 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 208, 763
XagI CCTNNNNNAGG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 553
XmnI GAANNNNTTC 2 cut(s) 237, 626
XspI CTAG 1 cut(s) 447
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.