Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003549

Physical Location & Seq

Genomic Coordinates Forward (+)

16898522 .. 16903355

Gene Structure 4834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAGCACTCGCAATCCCACCATGACGACAAAGCCACTGCCACCGCCACCGCCTTATCGGATCCGGAGTGGGATGAGCCCTTCACAGAGGAAGACCTACGAGCCATTGAAGCCGCATTCGAAGCTGCTGCAACTTCCAAAAAACGACGCGCAAATCCAGTCGACGAAGTCGTCACGGACCAGTCCCACAGTGCCCGCCGCCGACTGCCGAGTTCAATTCTCGCTCTCCAGCATCCCAACGCCTTCGCTCTCTCTCCATGTCGTCAAGCCAATACAAGGATGAGATATCCTGTGTTGAAGTTTGGAGGTCAGATTACATATAGCAGGACCACAGTTGAAGTGGAGAAAGCTGCCATGGATATCTTAAAGACTGTGAAAGCAAAGCAAAACGAAATGGGTCAAAATGCAGTGGGATTTGACATTGAGTGGAAACCCACATTCCAAAGAGGTGTTCCACCAGGGAAGGCTGCAGTCCTGCAGATATGTGGAGACACAAGTTGTTGTCATGTGATGCATATCATACATTCTGGAATCCCTCGAAGTCTGCAGTTACTTCTTGAAAGTTCTTCAATTTTCAAGGTTGGAGCTGGTATAGCTAATGATGCTGTTAAGGTTTTCAAGGATTATAATGTATCTATTAAAGCTGTGGAGGATCTTTCATATCTTGCTAATCAAAAGCTTGGAGATTCACAGAATTGGGGTCTTGCATCCCTAACTGAGAAGCTCATTTGTAAACAGCTTCTGAAGCCCAATAAAATTCGACTGGGTAACTGGGAGACCAAATATTTATCAAAAGAGCAGCTGCAGTATGCTGCTACCGATGCATTTGCATCATGGTATCTTCATGAGGTGCTAAGGAGCCTCCCTGATGCTGAAGAAGTTGAGAAAGTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

299

Amino Acids

33.18

Weight (kDa)

6.76

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	113 - 286	4.6e-20	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34110 AT4G13870 AT4G13870 AT4G13885
fragaria_vesca	FvH4_4g13310 FvH4_4g13310
malus_domestica	MD05G1230400.v1.1
prunus_persica	Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1
pyrus_communis	pycom04g01340
rosa_chinensis	RchiOBHm_Chr4g0413601
rosa_laevigata	RLG00000008207
rosa_roxburghii	Rroxscaffold_1G00029650 Rroxscaffold_3G00236750 Rroxscaffold_3G00240660 Rroxscaffold_5G00357530
rosa_rugosa	Rorug04G0121400
rosa_samantha	Rh4AG181100 Rh4BG180300 Rh4CG192200 Rh4DG176400
rosa_wichuraiana	Rw4G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	627
AasI	GACNNNNNNGTC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	5 cut(s)	45, 51, 114, 196, 199
AclWI	GGATC	3 cut(s)	56, 69, 660
AcsI	RAATTY	1 cut(s)	756
AcuI	CTGAAG	2 cut(s)	764, 894
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	8 cut(s)	110, 216, 298, 338, 560, 570, 577, 619
AjnI	CCWGG	1 cut(s)	457
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	9 cut(s)	125, 350, 587, 596, 644, 679, 724, 739, 802
AluI	AGCT	9 cut(s)	125, 350, 587, 596, 644, 679, 724, 739, 802
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	483, 770
AlwI	GGATC	3 cut(s)	56, 69, 660
AlwNI	CAGNNNCTG	1 cut(s)	742
Aor13HI	TCCGGA	1 cut(s)	64
ApeKI	GCWGC	7 cut(s)	125, 128, 350, 467, 799, 802, 812
ApoI	RAATTY	1 cut(s)	756
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	178, 327
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	2 cut(s)	178, 327
BaeGI	GKGCMC	1 cut(s)	196
BamHI	GGATCC	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	7 cut(s)	112, 115, 337, 454, 789, 799, 811
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 809, 843
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	483, 770
BfmI	CTRYAG	4 cut(s)	468, 476, 545, 803
BisI	GCNGC	9 cut(s)	114, 126, 129, 199, 351, 468, 800, 803, 813
BlsI	GCNGC	9 cut(s)	115, 127, 130, 200, 352, 469, 801, 804, 814
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	2 cut(s)	178, 327
BmgT120I	GGNCC	2 cut(s)	178, 327
BmiI	GGNNCC	2 cut(s)	63, 860
BmrFI	CCNGG	1 cut(s)	459
BmrI	ACTGGG	2 cut(s)	773, 781
BmsI	GCATC	7 cut(s)	241, 501, 592, 716, 811, 839, 859
BmuI	ACTGGG	2 cut(s)	773, 781
BpiI	GAAGAC	1 cut(s)	99
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	854
Bpu14I	TTCGAA	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	515
BsaI	GGTCTC	1 cut(s)	770
BsaJI	CCNNGG	2 cut(s)	354, 458
BsaWI	WCCGGW	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	4 cut(s)	158, 181, 768, 776
Bse8I	GATNNNNATC	1 cut(s)	515
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	354, 458
BseGI	GGATG	4 cut(s)	79, 232, 285, 707
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	4 cut(s)	158, 181, 768, 776
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	7 cut(s)	112, 115, 337, 454, 789, 799, 811
Bsh1236I	CGCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	483, 770
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	770
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	9, 81, 196
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	61, 652
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	5 cut(s)	45, 51, 114, 196, 199
BspCNI	CTCAG	1 cut(s)	709
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	63, 860
BspMAI	CTGCAG	4 cut(s)	472, 480, 549, 807
BspPI	GGATC	3 cut(s)	56, 69, 660
BspT104I	TTCGAA	1 cut(s)	120
BspTNI	GGTCTC	1 cut(s)	770
BsrI	ACTGG	4 cut(s)	158, 181, 768, 776
BssECI	CCNNGG	2 cut(s)	354, 458
BssMI	GATC	2 cut(s)	61, 652
BssT1I	CCWWGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	4 cut(s)	191, 334, 373, 894
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	717, 854
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	4 cut(s)	79, 232, 285, 707
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	64, 655
BstMAI	GTCTC	2 cut(s)	483, 770
BstMBI	GATC	2 cut(s)	61, 652
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 122, 593, 602, 745, 821
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	4 cut(s)	468, 476, 545, 803
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	7 cut(s)	112, 115, 337, 454, 789, 799, 811
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	2 cut(s)	61, 652
BstYI	RGATCY	2 cut(s)	61, 652
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	79, 232, 285, 707
BtsI	GCAGTG	2 cut(s)	36, 414
BtsIMutI	CAGTG	3 cut(s)	36, 196, 414
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	742
CciI	TCATGA	1 cut(s)	844
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	178, 327
CseI	GACGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	6 cut(s)	23, 258, 355, 506, 834, 845
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	2 cut(s)	717, 854
DpnI	GATC	2 cut(s)	63, 654
DpnII	GATC	2 cut(s)	61, 652
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	770
Eco32I	GATATC	2 cut(s)	287, 361
Eco47I	GGWCC	2 cut(s)	178, 327
Eco57I	CTGAAG	2 cut(s)	764, 894
EcoRII	CCWGG	1 cut(s)	457
EcoRV	GATATC	2 cut(s)	287, 361
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	2 cut(s)	516, 826
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	6 cut(s)	26, 261, 358, 509, 837, 848
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	6 cut(s)	22, 257, 354, 505, 833, 844
FauI	CCCGC	1 cut(s)	203
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	9 cut(s)	114, 126, 129, 199, 351, 468, 800, 803, 813
FokI	GGATG	4 cut(s)	86, 219, 292, 694
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	9 cut(s)	114, 126, 129, 199, 351, 468, 800, 803, 813
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	9 cut(s)	114, 126, 129, 199, 351, 468, 800, 803, 813
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	1 cut(s)	65
HgaI	GACGC	1 cut(s)	156
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	6 cut(s)	26, 261, 358, 509, 837, 848
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	2 cut(s)	531, 686
HpaII	CCGG	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	163, 734
Hpy188I	TCNGA	3 cut(s)	61, 312, 744
Hpy188III	TCNNGA	4 cut(s)	65, 528, 557, 845
Hpy8I	GTNNAC	2 cut(s)	163, 734
Hpy99I	CGWCG	2 cut(s)	150, 167
HpyAV	CCTTC	3 cut(s)	91, 253, 457
HpyCH4III	ACNGT	4 cut(s)	191, 334, 373, 894
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 122, 593, 602, 745, 821
HpyF3I	CTNAG	2 cut(s)	717, 854
Hsp92II	CATG	6 cut(s)	26, 261, 358, 509, 837, 848
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	61, 652
LmnI	GCTCC	3 cut(s)	4, 584, 858
Lsp1109I	GCAGC	7 cut(s)	112, 115, 337, 454, 789, 799, 811
LweI	GCATC	7 cut(s)	241, 501, 592, 716, 811, 839, 859
MaeIII	GTNAC	3 cut(s)	172, 549, 767
MalI	GATC	2 cut(s)	63, 654
MboI	GATC	2 cut(s)	61, 652
MboII	GAAGA	4 cut(s)	104, 558, 833, 887
MflI	RGATCY	2 cut(s)	61, 652
MhlI	GDGCHC	3 cut(s)	9, 81, 196
MluCI	AATT	4 cut(s)	216, 570, 694, 756
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	7 cut(s)	82, 299, 440, 546, 643, 841, 872
Mph1103I	ATGCAT	2 cut(s)	516, 826
MroI	TCCGGA	1 cut(s)	64
MseI	TTAA	3 cut(s)	365, 609, 639
MspA1I	CMGCKG	1 cut(s)	802
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	110, 122, 593, 602, 745, 821
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	61, 652
NlaIII	CATG	6 cut(s)	26, 261, 358, 509, 837, 848
NlaIV	GGNNCC	2 cut(s)	63, 860
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	2 cut(s)	516, 826
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	844
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	531, 686
PflFI	GACNNNGTC	1 cut(s)	167
PkrI	GCNGC	9 cut(s)	115, 127, 130, 200, 352, 469, 801, 804, 814
PsiI	TTATAA	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	2 cut(s)	63, 860
PspPI	GGNCC	2 cut(s)	178, 327
PstI	CTGCAG	4 cut(s)	472, 480, 549, 807
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	61, 652
PsyI	GACNNNGTC	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	802
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	365, 609, 639
SatI	GCNGC	9 cut(s)	114, 126, 129, 199, 351, 468, 800, 803, 813
Sau3AI	GATC	2 cut(s)	61, 652
Sau96I	GGNCC	2 cut(s)	178, 327
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	3 cut(s)	9, 81, 196
SfaNI	GCATC	7 cut(s)	241, 501, 592, 716, 811, 839, 859
SfcI	CTRYAG	4 cut(s)	468, 476, 545, 803
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	2 cut(s)	178, 327
Sse9I	AATT	4 cut(s)	216, 570, 694, 756
SsiI	CCGC	5 cut(s)	45, 51, 114, 196, 199
SspI	AATATT	1 cut(s)	785
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	191, 334, 373, 894
TaqI	TCGA	4 cut(s)	120, 162, 538, 760
TasI	AATT	4 cut(s)	216, 570, 694, 756
TatI	WGTACW	1 cut(s)	889
TauI	GCSGC	2 cut(s)	116, 201
TfiI	GAWTC	2 cut(s)	531, 686
Tru1I	TTAA	3 cut(s)	365, 609, 639
Tru9I	TTAA	3 cut(s)	365, 609, 639
TscAI	CASTG	3 cut(s)	43, 196, 414
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	125, 128, 350, 467, 799, 802, 812
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	648, 833
TspGWI	ACGGA	1 cut(s)	191
TspRI	CASTG	3 cut(s)	43, 196, 414
Tth111I	GACNNNGTC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	178, 327
XapI	RAATTY	1 cut(s)	756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmiI	GTMKAC	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	516, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.