Rroxscaffold_3G00236750

Werner Syndrome-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
24130854 .. 24151735
20882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236750.1

Sequence Viewer

Length: 1152 bp
ATGATTGATTGCGGGGAGGAAGGCTGGCCTCGGGCTTTTAGATTCTTCAACAAGAATCAAGTTGACCACATTAAGCCGCCGTCCGGGGAGGAGAGGAGGCCACCGGCTGCTCGTGGAAAGGAGGGCGACCTAGTCCGGACTTTGTTTCACCTCAAAAGCTTGCCGGAGGAGGGGAGAAATCCAAGGAAGAAGGATCGGCCGTTTTCGCGGTTGAGCACGGAGACCGTGGAAGAGCAATGCTCTCTCCGTACAACACCGCTCGGGGAAGCGGTTCGAGTCGAGGTGGACCGCCGGTGCGAGGCACCATCCGGTTTCGCCGACGGTTACTTCGCCTCCACCGTGCAGCGTTGGCTCCAGCGGTTCCGTGATTTCAAGAGGGCTCGCTTCTATCCTCCACCGTCTTCTATCGTAAACGAGTGGGCAAGGAAATCAACGGCGAAGAAGAGGCGGCCATTCTTCGCATGGTGCAAGCTGTTGTGCTGTGCGGTCATTGGCAATGTTTGCCATGTGTTCATGAAGGGATTAAATTGTGTTCAGGTCTATGGTTTAAAAAAAAAATTACTTGATGCATTGCTACGCAGACCCAAAGACAGGCCTCTTTTAATGGATAGCAATCATGTGGCTCCTATGGCAAAGAGAAGTGAATGGAGTGGCGTGATGGAGCACTCGCAATCTCAAAATAACAACAAGGGCAGAGCCATCGGCACCACCATATCGGAATCCGAATGGGAGGAGCCTTCACGAGAGGAAGACCACGAAGCCATTGAAGCCGCATTCGAAGCCGCTGTGACTTCTTCTATCTCCAAAAAGCGACGCTCCATTCCGGACGACGAAAACACGGACCGGTCCCGAGTGCCGGCGCGTGCGCCGAGTTCGGTTCTCGCTCTCCGGCATCCAAACGCCTTCGCTCTCTCTCGCCTTGTCGTCAAGGTCGGTTCGCTCACTCGATTTTGGATGAGATATCCTGTGTTGAAGTTTGGAGGTCGGGTTACATATAACGGGACTGCAGTTGAAGTGGTGAAAGCTGCCATGAAGATTTTAAAGACTGTGGAAGTAAAGAAAAACGAAATGGGTCAAAATGCAGTTGGATTTGATATTGAGTGGGAAACCCACGTTCTAAAGAGGGGTAGAGTTTCCATCATAAGGACGTAA

Protein Analysis

383

Amino Acids

43.67

Weight (kDa)

9.9

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 301, 704
AccBSI CCGCTC 1 cut(s) 259
AccII CGCG 2 cut(s) 208, 862
AccIII TCCGGA 2 cut(s) 135, 823
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 197, 449
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 6 cut(s) 83, 170, 298, 591, 856, 1143
AgeI ACCGGT 1 cut(s) 843
AgsI TTSAA 5 cut(s) 49, 373, 767, 973, 1013
AluBI AGCT 3 cut(s) 159, 472, 1025
AluI AGCT 3 cut(s) 159, 472, 1025
Alw21I GWGCWC 2 cut(s) 218, 666
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 201
Ama87I CYCGRG 3 cut(s) 30, 260, 849
Aor13HI TCCGGA 2 cut(s) 135, 823
AoxI GGCC 5 cut(s) 26, 98, 197, 449, 593
ApeKI GCWGC 3 cut(s) 107, 343, 1025
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AsiGI ACCGGT 1 cut(s) 843
Asp700I GAANNNNTTC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 862, 868
AspS9I GGNCC 3 cut(s) 286, 841, 846
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 2 cut(s) 140, 1030
AsuII TTCGAA 1 cut(s) 777
AvaI CYCGRG 3 cut(s) 30, 260, 849
AvaII GGWCC 3 cut(s) 286, 841, 846
BanI GGYRCC 2 cut(s) 301, 704
BanII GRGCYC 1 cut(s) 382
BauI CACGAG 2 cut(s) 111, 741
BbsI GAAGAC 2 cut(s) 393, 756
Bbv12I GWGCWC 2 cut(s) 218, 666
BbvI GCAGC 3 cut(s) 94, 355, 1012
BccI CCATC 4 cut(s) 313, 652, 707, 1145
BceAI ACGGC 3 cut(s) 64, 184, 450
BcgI CGANNNNNNTGC 2 cut(s) 682, 716
BcnI CCSGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 1 cut(s) 1005
BisI GCNGC 7 cut(s) 77, 108, 344, 449, 771, 783, 1026
BlsI GCNGC 7 cut(s) 78, 109, 345, 450, 772, 784, 1027
Bme1390I CCNGG 1 cut(s) 85
Bme18I GGWCC 3 cut(s) 286, 841, 846
BmeT110I CYCGRG 3 cut(s) 30, 260, 849
BmgT120I GGNCC 3 cut(s) 286, 841, 846
BmiI GGNNCC 7 cut(s) 303, 353, 362, 624, 706, 735, 848
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 556, 901
BpiI GAAGAC 2 cut(s) 393, 756
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 85
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 29, 84, 182, 225
BsaWI WCCGGW 4 cut(s) 135, 308, 823, 843
BsaXI ACNNNNNCTCC 4 cut(s) 317, 347, 972, 1002
Bsc4I CCNNNNNNNGG 6 cut(s) 83, 170, 298, 591, 856, 1143
Bse118I RCCGGY 4 cut(s) 103, 291, 843, 856
Bse3DI GCAATG 3 cut(s) 242, 502, 569
Bse8I GATNNNNATC 1 cut(s) 612
BseAI TCCGGA 2 cut(s) 135, 823
BseDI CCNNGG 4 cut(s) 29, 84, 182, 225
BseGI GGATG 3 cut(s) 305, 892, 960
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 6 cut(s) 83, 170, 298, 591, 856, 1143
BseMI GCAATG 3 cut(s) 242, 502, 569
BseRI GAGGAG 4 cut(s) 104, 109, 182, 746
BseX3I CGGCCG 1 cut(s) 197
BseXI GCAGC 3 cut(s) 94, 355, 1012
BsgI GTGCAG 1 cut(s) 362
Bsh1236I CGCG 2 cut(s) 208, 862
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 5 cut(s) 28, 100, 199, 451, 595
BshNI GGYRCC 2 cut(s) 301, 704
BshTI ACCGGT 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 218, 666
BsiHKCI CYCGRG 3 cut(s) 30, 260, 849
BslFI GGGAC 2 cut(s) 832, 1015
BslI CCNNNNNNNGG 6 cut(s) 83, 170, 298, 591, 856, 1143
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 832, 1015
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 5 cut(s) 28, 100, 199, 451, 595
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 3 cut(s) 30, 260, 849
Bsp119I TTCGAA 1 cut(s) 777
Bsp1286I GDGCHC 3 cut(s) 218, 382, 666
Bsp13I TCCGGA 2 cut(s) 135, 823
Bsp143I GATC 1 cut(s) 193
BspANI GGCC 5 cut(s) 28, 100, 199, 451, 595
BspEI TCCGGA 2 cut(s) 135, 823
BspFNI CGCG 2 cut(s) 208, 862
BspHI TCATGA 1 cut(s) 513
BspLI GGNNCC 7 cut(s) 303, 353, 362, 624, 706, 735, 848
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 1 cut(s) 201
BspQI GCTCTTC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 777
BspT107I GGYRCC 2 cut(s) 301, 704
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 259
BsrDI GCAATG 3 cut(s) 242, 502, 569
BsrFI RCCGGY 4 cut(s) 103, 291, 843, 856
BssAI RCCGGY 4 cut(s) 103, 291, 843, 856
BssECI CCNNGG 4 cut(s) 29, 84, 182, 225
BssMI GATC 1 cut(s) 193
BssSI CACGAG 2 cut(s) 111, 741
BssT1I CCWWGG 1 cut(s) 182
Bst2BI CACGAG 2 cut(s) 111, 741
Bst4CI ACNGT 5 cut(s) 226, 323, 340, 399, 1048
Bst6I CTCTTC 2 cut(s) 225, 437
BstAPI GCANNNNNTGC 1 cut(s) 501
BstBI TTCGAA 1 cut(s) 777
BstC8I GCNNGC 6 cut(s) 26, 161, 382, 470, 858, 864
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 305, 892, 960
BstFNI CGCG 2 cut(s) 208, 862
BstHHI GCGC 2 cut(s) 862, 868
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 193
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 6 cut(s) 205, 349, 501, 629, 767, 779
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 1005
BstUI CGCG 2 cut(s) 208, 862
BstV1I GCAGC 3 cut(s) 94, 355, 1012
BstV2I GAAGAC 2 cut(s) 393, 756
BstZI CGGCCG 1 cut(s) 197
BsuRI GGCC 5 cut(s) 28, 100, 199, 451, 595
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 305, 892, 960
Cac8I GCNNGC 6 cut(s) 26, 161, 382, 470, 858, 864
CciI TCATGA 1 cut(s) 513
CfoI GCGC 2 cut(s) 862, 868
Cfr10I RCCGGY 4 cut(s) 103, 291, 843, 856
Cfr13I GGNCC 3 cut(s) 286, 841, 846
CpoI CGGWCCG 1 cut(s) 841
CseI GACGC 1 cut(s) 822
Csp6I GTAC 1 cut(s) 249
CspAI ACCGGT 1 cut(s) 843
CspI CGGWCCG 1 cut(s) 841
CviAII CATG 5 cut(s) 462, 506, 514, 617, 1030
CviQI GTAC 1 cut(s) 249
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 2 cut(s) 549, 1041
EaeI YGGCCR 2 cut(s) 197, 449
EagI CGGCCG 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 225, 437
EarI CTCTTC 2 cut(s) 225, 437
EclXI CGGCCG 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 182
Eco147I AGGCCT 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 382
Eco31I GGTCTC 1 cut(s) 215
Eco32I GATATC 1 cut(s) 962
Eco47I GGWCC 3 cut(s) 286, 841, 846
Eco52I CGGCCG 1 cut(s) 197
Eco88I CYCGRG 3 cut(s) 30, 260, 849
EcoRV GATATC 1 cut(s) 962
EcoT14I CCWWGG 1 cut(s) 182
EcoT22I ATGCAT 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 5 cut(s) 465, 509, 517, 620, 1033
FaqI GGGAC 2 cut(s) 832, 1015
FatI CATG 5 cut(s) 461, 505, 513, 616, 1029
FauI CCCGC 1 cut(s) 5
Fnu4HI GCNGC 7 cut(s) 77, 108, 344, 449, 771, 783, 1026
FokI GGATG 3 cut(s) 292, 879, 967
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 7 cut(s) 77, 108, 344, 449, 771, 783, 1026
FspBI CTAG 1 cut(s) 131
GlaI GCGC 2 cut(s) 861, 867
GluI GCNGC 7 cut(s) 77, 108, 344, 449, 771, 783, 1026
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 5 cut(s) 28, 100, 199, 451, 595
HgaI GACGC 1 cut(s) 822
HhaI GCGC 2 cut(s) 862, 868
Hin1II CATG 5 cut(s) 465, 509, 517, 620, 1033
Hin6I GCGC 2 cut(s) 860, 866
HinP1I GCGC 2 cut(s) 860, 866
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 4 cut(s) 42, 55, 276, 719
HphI GGTGA 2 cut(s) 140, 1030
Hpy166II GTNNAC 3 cut(s) 64, 286, 412
Hpy188I TCNGA 2 cut(s) 718, 724
Hpy188III TCNNGA 6 cut(s) 136, 373, 514, 741, 824, 849
Hpy8I GTNNAC 3 cut(s) 64, 286, 412
Hpy99I CGWCG 3 cut(s) 323, 816, 833
HpyAV CCTTC 5 cut(s) 14, 184, 511, 747, 913
HpyCH4III ACNGT 5 cut(s) 226, 323, 340, 399, 1048
HpyCH4IV ACGT 2 cut(s) 1113, 1148
HpyCH4V TGCA 5 cut(s) 343, 468, 569, 1007, 1082
HpyF10VI GCNNNNNNNGC 6 cut(s) 205, 349, 501, 629, 767, 779
HpySE526I ACGT 2 cut(s) 1113, 1148
Hsp92II CATG 5 cut(s) 465, 509, 517, 620, 1033
HspAI GCGC 2 cut(s) 860, 866
Kpn2I TCCGGA 2 cut(s) 135, 823
KroI GCCGGC 1 cut(s) 856
KroNI GCCGGC 1 cut(s) 858
Kzo9I GATC 1 cut(s) 193
LguI GCTCTTC 1 cut(s) 225
LmnI GCTCC 5 cut(s) 357, 628, 661, 733, 821
Lsp1109I GCAGC 3 cut(s) 94, 355, 1012
LweI GCATC 2 cut(s) 556, 901
MaeI CTAG 1 cut(s) 131
MaeII ACGT 2 cut(s) 1113, 1148
MaeIII GTNAC 3 cut(s) 323, 787, 988
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 259
MboI GATC 1 cut(s) 193
MhlI GDGCHC 3 cut(s) 218, 382, 666
MluCI AATT 2 cut(s) 526, 557
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 1066
Mph1103I ATGCAT 1 cut(s) 571
MroI TCCGGA 2 cut(s) 135, 823
MroNI GCCGGC 1 cut(s) 856
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 5 cut(s) 72, 524, 548, 602, 1040
MspA1I CMGCKG 2 cut(s) 358, 785
MspR9I CCNGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 773
MvnI CGCG 2 cut(s) 208, 862
MwoI GCNNNNNNNGC 6 cut(s) 205, 349, 501, 629, 767, 779
NaeI GCCGGC 1 cut(s) 858
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 193
NgoMIV GCCGGC 1 cut(s) 856
NlaIII CATG 5 cut(s) 465, 509, 517, 620, 1033
NlaIV GGNNCC 7 cut(s) 303, 353, 362, 624, 706, 735, 848
NmeAIII GCCGAG 1 cut(s) 894
NmuCI GTSAC 1 cut(s) 787
NsiI ATGCAT 1 cut(s) 571
NspV TTCGAA 1 cut(s) 777
PagI TCATGA 1 cut(s) 513
PceI AGGCCT 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 1 cut(s) 773
PdiI GCCGGC 1 cut(s) 858
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 42, 55, 719
PflFI GACNNNGTC 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 843
PkrI GCNGC 7 cut(s) 78, 109, 345, 450, 772, 784, 1027
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 7 cut(s) 303, 353, 362, 624, 706, 735, 848
PspPI GGNCC 3 cut(s) 286, 841, 846
PstI CTGCAG 1 cut(s) 1009
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
Rsr2I CGGWCCG 1 cut(s) 841
RsrII CGGWCCG 1 cut(s) 841
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 5 cut(s) 72, 524, 548, 602, 1040
SatI GCNGC 7 cut(s) 77, 108, 344, 449, 771, 783, 1026
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 3 cut(s) 286, 841, 846
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 3 cut(s) 218, 382, 666
SfaNI GCATC 2 cut(s) 556, 901
SfcI CTRYAG 1 cut(s) 1005
SfuI TTCGAA 1 cut(s) 777
SgrAI CRCCGGYG 1 cut(s) 291
SinI GGWCC 3 cut(s) 286, 841, 846
Sse9I AATT 2 cut(s) 526, 557
SseBI AGGCCT 1 cut(s) 595
SspMI CTAG 1 cut(s) 131
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 83
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 5 cut(s) 226, 323, 340, 399, 1048
TaiI ACGT 2 cut(s) 1116, 1151
TaqI TCGA 4 cut(s) 274, 279, 777, 946
TasI AATT 2 cut(s) 526, 557
TauI GCSGC 4 cut(s) 79, 451, 773, 785
TfiI GAWTC 3 cut(s) 42, 55, 719
Tru1I TTAA 5 cut(s) 72, 524, 548, 602, 1040
Tru9I TTAA 5 cut(s) 72, 524, 548, 602, 1040
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 3 cut(s) 107, 343, 1025
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 3 cut(s) 502, 530, 1046
TspGWI ACGGA 4 cut(s) 233, 236, 353, 854
Tth111I GACNNNGTC 1 cut(s) 131
VpaK11BI GGWCC 3 cut(s) 286, 841, 846
XcmI CCANNNNNNNNNTGG 1 cut(s) 459
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.