Rroxscaffold_3G00240660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003549
Physical Location & Seq
Forward (+)
32492638 .. 32497793
5156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240660.1

Sequence Viewer

Length: 261 bp
ATGACAACAAGGGCGAGCCATCAGCACCACCATATCGGAATCCGAATGGGAGGAGCCTTCATAGAGGAAGACCACGAAGCCATTGAAGCCGCATTCGAAGCTGCTGTGACTTCTTCTATCTCCAAAAAGCGACGCTCCATTCCGGACGACGAAAACACGGACCAGTCCCGAGTGCCCGCGCCGACCGCCGAGTTCGCTATTATAAGGTCACCGAACCTGGCCCTTACCAATTATTCATTTCCTGAACAAATGGGTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.51

Weight (kDa)

5.42

Isoelectric Point (pI)

74.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AccII CGCG 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 3 cut(s) 90, 177, 186
AgsI TTSAA 1 cut(s) 86
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Ama87I CYCGRG 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 2 cut(s) 160, 220
AsuHPI GGTGA 1 cut(s) 201
AsuII TTCGAA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 168
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 27
BciT130I CCWGG 1 cut(s) 218
BisI GCNGC 2 cut(s) 90, 102
BlsI GCNGC 2 cut(s) 91, 103
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 168
BmgT120I GGNCC 2 cut(s) 160, 220
BmiI GGNNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 75
Bpu14I TTCGAA 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 142
Bse1I ACTGG 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 186
BshFI GGCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 186
BsiHKCI CYCGRG 1 cut(s) 168
BsiSI CCGG 1 cut(s) 143
BslFI GGGAC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 177
Bsp13I TCCGGA 1 cut(s) 142
BspACI CCGC 3 cut(s) 90, 177, 186
BspANI GGCC 1 cut(s) 221
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 96
BsrI ACTGG 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 16, 177
BstEII GGTNACC 1 cut(s) 207
BstFNI CGCG 1 cut(s) 179
BstHHI GCGC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 186
BstMWI GCNNNNNNNGC 4 cut(s) 86, 98, 185, 194
BstNI CCWGG 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 216
BstSLI GKGCMC 1 cut(s) 177
BstUI CGCG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 16, 177
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 160, 220
CseI GACGC 1 cut(s) 141
CviJI RGCY 6 cut(s) 18, 56, 80, 89, 101, 221
CviKI_1 RGCY 6 cut(s) 18, 56, 80, 89, 101, 221
Eco47I GGWCC 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 168
Eco91I GGTNACC 1 cut(s) 207
EcoO65I GGTNACC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 216
FaiI YATR 3 cut(s) 33, 62, 203
FaqI GGGAC 1 cut(s) 151
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 90, 102
Fsp4HI GCNGC 2 cut(s) 90, 102
GlaI GCGC 1 cut(s) 180
GluI GCNGC 2 cut(s) 90, 102
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 143
HgaI GACGC 1 cut(s) 141
HhaI GCGC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 38, 44
Hpy188III TCNNGA 3 cut(s) 143, 168, 242
Hpy99I CGWCG 2 cut(s) 135, 152
HpyAV CCTTC 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 98, 185, 194
HspAI GCGC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 142
LmnI GCTCC 2 cut(s) 53, 140
LpnPI CCDG 5 cut(s) 156, 176, 203, 230, 255
Lsp1109I GCAGC 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 106, 207, 254
MboII GAAGA 2 cut(s) 80, 105
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 1 cut(s) 229
MnlI CCTC 2 cut(s) 44, 58
MroI TCCGGA 1 cut(s) 142
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 218
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 86, 98, 185, 194
NlaIV GGNNCC 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 3 cut(s) 106, 207, 254
NspV TTCGAA 1 cut(s) 96
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 91, 103
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 160, 220
SatI GCNGC 2 cut(s) 90, 102
Sau96I GGNCC 2 cut(s) 160, 220
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 103, 209, 219
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 1 cut(s) 160
Sse9I AATT 1 cut(s) 229
SsiI CCGC 3 cut(s) 90, 177, 186
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 229
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 39
TseFI GTSAC 3 cut(s) 106, 207, 254
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 3 cut(s) 106, 207, 254
TspDTI ATGAA 2 cut(s) 49, 225
TspGWI ACGGA 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.