Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003549

Physical Location & Seq

Genomic Coordinates Forward (+)

37200697 .. 37205829

Gene Structure 5133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGCACTCGCAATCTCAAAATGACAACAAGGGCAAAGCCATCAGCACCACCTTATCGGAATCCGAATGGGAGGAGCCCTTCACAGAGGAAGACCTCGAAGCCATTGAAGCCGCATTCGAAGCCGCTGCGACTTCTTCTCTCTCCAAAAAGCGACGCTCCAATCCAGACGACGAAGACACGGACCAGTCCCAGAGTGCCCGGCGCCGACTGCCGAGTTCAGTTCTCGCTCTCCAGCATCCAAACGCCTTCGCTCTCTCGCCTTGTCGTCAAGGTCGGTTCGCTCACTCTGATTTTGGTTTAGATGAAGAGAGTATTGTGAAGATAAGTAGCATTATGACTGTAGGTGCTTCATGTTATGGGGCAGCACCTGGAATCTTAGAAAGGCTAAGGTTGTATCGGAGTACAGCTGCCAATATAAAGATGAGATATCCTGTGTTGAAGTTTGGAGGTCAGGTTACATATAGCAGGACTGCAGTTGAAGTGGAGAAAGCTGCCATGGAGATTTTAAAGACTGTGAAGGCAAAGAAAAACGAAATGGGTCAAAATGCAGTTGGATTTGATATTGAGTGGAAACCCACATTCCAGAGAGGTGTTCCACCTGGGAAGGTTGCAGTCCTGCAGATATGTGGAGACACAAGTTGTTGTCATGTGATGCATATCATTCATTCTGGAATTCCTCGAAGTCTGCAGTTACTTCTTGAAAATTCTTCGATTTTGAAGGTTGGAGCTGGTATCGCTAATGATGCTGTTAAGGTTTTCAAGGATTATAATGTATCTATTAAAGCTGTGGAGGATCTTTCATATCTGGCTAATCATAAGCTTGGAGATTCACAAAATTGGGGTCTTGCATCCCTAACTGAGAAGCTCATTTGTAAACAGCTTCTGAAGCCCAAAAAAATTCGATTGGGTAACTGGGAGACCAAATATTTATCAAAAGAGCAGCTGCAGTATGCTGCCACTGATGCATTTGCATCATGGTATCTTCATGAGGTGCTAAGGAGCTTCCCTGATGCTGAAAAACTTGAAAAAGTTACAGCAGACAACCAGAGTGAGGGACAAGCTGTATCATGTAATTACTTTCAGACTGAGGAACCAGAAGCTGCATCCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1

Protein Analysis

371

Amino Acids

41.04

Weight (kDa)

6.12

Isoelectric Point (pI)

54.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	163 - 334	3e-21	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34110 AT4G13870 AT4G13870 AT4G13885
fragaria_vesca	FvH4_4g13310 FvH4_4g13310
malus_domestica	MD05G1230400.v1.1
prunus_persica	Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1 Prupe.1G164900_v2.0.a1
pyrus_communis	pycom04g01340
rosa_chinensis	RchiOBHm_Chr4g0413601
rosa_laevigata	RLG00000008207
rosa_roxburghii	Rroxscaffold_1G00029650 Rroxscaffold_3G00236750 Rroxscaffold_3G00240660 Rroxscaffold_5G00357530
rosa_rugosa	Rorug04G0121400
rosa_samantha	Rh4AG181100 Rh4BG180300 Rh4CG192200 Rh4DG176400
rosa_wichuraiana	Rw4G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB1I	GGYRCC	1 cut(s)	204
AciI	CCGC	2 cut(s)	114, 126
AclWI	GGATC	1 cut(s)	804
AcsI	RAATTY	3 cut(s)	675, 706, 900
AcuI	CTGAAG	1 cut(s)	908
AcyI	GRCGYC	1 cut(s)	205
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	1 cut(s)	1054
AgsI	TTSAA	7 cut(s)	110, 442, 482, 704, 721, 763, 1028
AjnI	CCWGG	2 cut(s)	370, 601
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	627, 914
AlwI	GGATC	1 cut(s)	804
AlwNI	CAGNNNCTG	3 cut(s)	371, 886, 1103
ApeKI	GCWGC	8 cut(s)	128, 365, 410, 494, 943, 946, 956, 1103
ApoI	RAATTY	3 cut(s)	675, 706, 900
ArsI	GACNNNNNNTTYG	2 cut(s)	829, 861
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	202
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	202
BanI	GGYRCC	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	2 cut(s)	99, 183
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	8 cut(s)	115, 377, 397, 481, 933, 943, 955, 1090
BccI	CCATC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	372, 603
BcnI	CCSGG	1 cut(s)	202
BcoDI	GTCTC	2 cut(s)	627, 914
BfmI	CTRYAG	5 cut(s)	342, 474, 620, 689, 947
BfoI	RGCGCY	1 cut(s)	208
Bme1390I	CCNGG	3 cut(s)	202, 372, 603
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	3 cut(s)	78, 206, 1095
BmrFI	CCNGG	3 cut(s)	202, 372, 603
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	7 cut(s)	247, 645, 736, 860, 955, 983, 1003
BmuI	ACTGGG	1 cut(s)	925
BpiI	GAAGAC	2 cut(s)	99, 183
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	2 cut(s)	389, 998
Bpu14I	TTCGAA	1 cut(s)	120
BpuMI	CCSGG	1 cut(s)	202
BsaBI	GATNNNNATC	1 cut(s)	659
BsaHI	GRCGYC	1 cut(s)	205
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	2 cut(s)	498, 602
BsaXI	ACNNNNNCTCC	2 cut(s)	441, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	1054
Bse1I	ACTGG	2 cut(s)	187, 920
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	2 cut(s)	372, 603
BseDI	CCNNGG	2 cut(s)	498, 602
BseGI	GGATG	3 cut(s)	238, 851, 1106
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	1 cut(s)	1054
BseMII	CTCAG	2 cut(s)	852, 1080
BseNI	ACTGG	2 cut(s)	187, 920
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	8 cut(s)	115, 377, 397, 481, 933, 943, 955, 1090
BshNI	GGYRCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	175, 1071
BslI	CCNNNNNNNGG	1 cut(s)	1054
BsmAI	GTCTC	2 cut(s)	627, 914
BsmFI	GGGAC	2 cut(s)	175, 1071
BsmI	GAATGC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	914
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	3 cut(s)	9, 81, 202
Bsp143I	GATC	1 cut(s)	796
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	2 cut(s)	114, 126
BspCNI	CTCAG	2 cut(s)	853, 1081
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	3 cut(s)	78, 206, 1095
BspMAI	CTGCAG	4 cut(s)	478, 624, 693, 951
BspPI	GGATC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	204
BspTNI	GGTCTC	1 cut(s)	914
BsrI	ACTGG	2 cut(s)	187, 920
BssECI	CCNNGG	2 cut(s)	498, 602
BssMI	GATC	1 cut(s)	796
BssNI	GRCGYC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	2 cut(s)	372, 603
Bst4CI	ACNGT	2 cut(s)	343, 517
Bst6I	CTCTTC	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	205
BstBI	TTCGAA	1 cut(s)	120
BstDEI	CTNAG	5 cut(s)	379, 389, 861, 998, 1089
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	3 cut(s)	238, 851, 1106
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	1 cut(s)	799
BstMAI	GTCTC	2 cut(s)	627, 914
BstMBI	GATC	1 cut(s)	796
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 122, 211, 737, 746, 889, 965
BstNI	CCWGG	2 cut(s)	372, 603
BstSCI	CCNGG	3 cut(s)	200, 370, 601
BstSFI	CTRYAG	5 cut(s)	342, 474, 620, 689, 947
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	8 cut(s)	115, 377, 397, 481, 933, 943, 955, 1090
BstV2I	GAAGAC	2 cut(s)	99, 183
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	3 cut(s)	238, 851, 1106
BtsIMutI	CAGTG	1 cut(s)	960
CaiI	CAGNNNCTG	3 cut(s)	371, 886, 1103
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	6 cut(s)	354, 499, 650, 978, 989, 1071
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	5 cut(s)	379, 389, 861, 998, 1089
DinI	GGCGCC	1 cut(s)	206
DpnI	GATC	1 cut(s)	798
DpnII	GATC	1 cut(s)	796
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	914
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	908
EcoRI	GAATTC	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	370, 601
EcoRV	GATATC	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	2 cut(s)	660, 970
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	206
EheI	GGCGCC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	498
FaeI	CATG	6 cut(s)	357, 502, 653, 981, 992, 1074
FaqI	GGGAC	2 cut(s)	175, 1071
FatI	CATG	6 cut(s)	353, 498, 649, 977, 988, 1070
FokI	GGATG	3 cut(s)	225, 838, 1093
FriOI	GRGCYC	1 cut(s)	81
GlaI	GCGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	208
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	1 cut(s)	165
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	205
Hin1II	CATG	6 cut(s)	357, 502, 653, 981, 992, 1074
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	3 cut(s)	62, 375, 830
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	878
Hpy188I	TCNGA	6 cut(s)	61, 67, 292, 402, 888, 1086
Hpy188III	TCNNGA	5 cut(s)	167, 586, 672, 701, 989
Hpy8I	GTNNAC	1 cut(s)	878
Hpy99I	CGWCG	2 cut(s)	159, 176
HpyAV	CCTTC	5 cut(s)	91, 259, 514, 601, 715
HpyCH4III	ACNGT	2 cut(s)	343, 517
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 122, 211, 737, 746, 889, 965
HpyF3I	CTNAG	5 cut(s)	379, 389, 861, 998, 1089
Hsp92I	GRCGYC	1 cut(s)	205
Hsp92II	CATG	6 cut(s)	357, 502, 653, 981, 992, 1074
HspAI	GCGC	1 cut(s)	205
KasI	GGCGCC	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	796
LmnI	GCTCC	5 cut(s)	4, 76, 164, 728, 1002
Lsp1109I	GCAGC	8 cut(s)	115, 377, 397, 481, 933, 943, 955, 1090
LweI	GCATC	7 cut(s)	247, 645, 736, 860, 955, 983, 1003
MaeIII	GTNAC	4 cut(s)	457, 693, 911, 1033
MalI	GATC	1 cut(s)	798
MboI	GATC	1 cut(s)	796
MboII	GAAGA	7 cut(s)	104, 129, 188, 320, 334, 702, 977
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	9, 81, 202
MluCI	AATT	5 cut(s)	675, 706, 838, 900, 1075
Mly113I	GGCGCC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	535, 706
Mph1103I	ATGCAT	2 cut(s)	660, 970
MseI	TTAA	3 cut(s)	509, 753, 783
MspA1I	CMGCKG	3 cut(s)	128, 410, 946
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	3 cut(s)	202, 372, 603
Mva1269I	GAATGC	1 cut(s)	116
MvaI	CCWGG	2 cut(s)	372, 603
MwoI	GCNNNNNNNGC	7 cut(s)	110, 122, 211, 737, 746, 889, 965
NarI	GGCGCC	1 cut(s)	205
NciI	CCSGG	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	498
NdeII	GATC	1 cut(s)	796
NlaIII	CATG	6 cut(s)	357, 502, 653, 981, 992, 1074
NlaIV	GGNNCC	3 cut(s)	78, 206, 1095
NmeAIII	GCCGAG	1 cut(s)	240
NsiI	ATGCAT	2 cut(s)	660, 970
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	988
PctI	GAATGC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	62, 375, 830
PluTI	GGCGCC	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	771
Psp6I	CCWGG	2 cut(s)	370, 601
PspGI	CCWGG	2 cut(s)	370, 601
PspN4I	GGNNCC	3 cut(s)	78, 206, 1095
PspPI	GGNCC	1 cut(s)	184
PstI	CTGCAG	4 cut(s)	478, 624, 693, 951
PstNI	CAGNNNCTG	3 cut(s)	371, 886, 1103
PsuI	RGATCY	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	410, 946
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	509, 753, 783
Sau3AI	GATC	1 cut(s)	796
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	3 cut(s)	202, 372, 603
SduI	GDGCHC	3 cut(s)	9, 81, 202
SfaNI	GCATC	7 cut(s)	247, 645, 736, 860, 955, 983, 1003
SfcI	CTRYAG	5 cut(s)	342, 474, 620, 689, 947
SfoI	GGCGCC	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	120
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	5 cut(s)	675, 706, 838, 900, 1075
SsiI	CCGC	2 cut(s)	114, 126
SspDI	GGCGCC	1 cut(s)	204
SspI	AATATT	1 cut(s)	929
StyD4I	CCNGG	3 cut(s)	200, 370, 601
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	343, 517
TaqI	TCGA	5 cut(s)	99, 120, 682, 713, 904
TasI	AATT	5 cut(s)	675, 706, 838, 900, 1075
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	2 cut(s)	116, 128
TfiI	GAWTC	3 cut(s)	62, 375, 830
Tru1I	TTAA	3 cut(s)	509, 753, 783
Tru9I	TTAA	3 cut(s)	509, 753, 783
TscAI	CASTG	1 cut(s)	967
TseI	GCWGC	8 cut(s)	128, 365, 410, 494, 943, 946, 956, 1103
TspDTI	ATGAA	5 cut(s)	321, 342, 656, 792, 977
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	3 cut(s)	675, 706, 900
Zsp2I	ATGCAT	2 cut(s)	660, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.