AT2G34580

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010283
Physical Location & Seq
Reverse (-)
14565660 .. 14567673
2014 bp
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UTR
Exon/CDS
Intron
AT2G34580.2

Sequence Viewer

Length: 489 bp
ATGGCGCTTTCTTCAGCTTTCAAGGAGAGGCTCGATCAAATGGAGTTCACCAGAAACCAACGACTCAATCTTCTCCAGGCGGAGAAAGAACTACAAGTGAACAAAGCACAGATTTTAGCATCGAAGCACGCAACTATACAATCCATTGAACGCAGATGTTTGATGCTAGAACAGAAAATAGCAGCACAAAACCTGAAGATCACAATTCTCAGATCTAACATCGATGATCTCGACTCCAAATACCACAGCTATATACAACAATTGAGGACACTGAAGATTGAGGTTGAGGAGCTGAAAGAGTTAGATGAAGAGAGGGAGAAGTATTACAAGGTGAAATGTTCAGAGATGAATGAGTTTATGCAAAATGTTGAGAGGTTTAGATCAGAGAACCGGTTACAAATCGAGAACCTGCGAAACCGAATCAAGGAGCTTAACTCAACGTTCGAGGAAAGTCATCAGAAGAACATTTATCTACAGAACATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

162

Amino Acids

19.51

Weight (kDa)

7.75

Isoelectric Point (pI)

66.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 22 - 142 2.3e-33 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 417
AciI CCGC 1 cut(s) 80
AclI AACGTT 1 cut(s) 440
AcuI CTGAAG 2 cut(s) 215, 293
AfiI CCNNNNNNNGG 1 cut(s) 424
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 22, 149
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 4 cut(s) 17, 249, 292, 430
AluI AGCT 4 cut(s) 17, 249, 292, 430
ApeKI GCWGC 1 cut(s) 182
AsiGI ACCGGT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 40, 343
BbvI GCAGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 77
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 473
BfoI RGCGCY 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 417
BglII AGATCT 1 cut(s) 212
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 2 cut(s) 128, 153
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 390
BseBI CCWGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 424
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 302
BseXI GCAGC 1 cut(s) 194
BshTI ACCGGT 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 222
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 424
Bsp143I GATC 5 cut(s) 34, 198, 212, 226, 380
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 222
BspMI ACCTGC 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 390
BssAI RCCGGY 1 cut(s) 390
BssMI GATC 5 cut(s) 34, 198, 212, 226, 380
Bst2UI CCWGG 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 37, 201, 215, 229, 383
BstMBI GATC 5 cut(s) 34, 198, 212, 226, 380
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
Bsu15I ATCGAT 1 cut(s) 222
BsuTUI ATCGAT 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 222
CspAI ACCGGT 1 cut(s) 390
CviJI RGCY 5 cut(s) 17, 31, 249, 292, 430
CviKI_1 RGCY 5 cut(s) 17, 31, 249, 292, 430
DdeI CTNAG 1 cut(s) 209
DpnI GATC 5 cut(s) 36, 200, 214, 228, 382
DpnII GATC 5 cut(s) 34, 198, 212, 226, 380
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EciI GGCGGA 1 cut(s) 95
Eco57I CTGAAG 2 cut(s) 215, 293
EcoRII CCWGG 1 cut(s) 75
FaiI YATR 5 cut(s) 137, 252, 254, 359, 482
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 391
HhaI GCGC 1 cut(s) 7
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 3 cut(s) 63, 233, 420
HpaII CCGG 1 cut(s) 391
HphI GGTGA 2 cut(s) 40, 343
Hpy166II GTNNAC 2 cut(s) 48, 100
Hpy188I TCNGA 4 cut(s) 212, 343, 385, 459
Hpy188III TCNNGA 2 cut(s) 230, 403
Hpy8I GTNNAC 2 cut(s) 48, 100
HpyCH4IV ACGT 1 cut(s) 440
HpyCH4V TGCA 1 cut(s) 361
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 440
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 5 cut(s) 34, 198, 212, 226, 380
LmnI GCTCC 2 cut(s) 289, 427
LpnPI CCDG 6 cut(s) 62, 64, 89, 206, 404, 422
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 128, 153
MaeI CTAG 1 cut(s) 167
MaeII ACGT 1 cut(s) 440
MaeIII GTNAC 1 cut(s) 393
MalI GATC 5 cut(s) 36, 200, 214, 228, 382
MboI GATC 5 cut(s) 34, 198, 212, 226, 380
MboII GAAGA 6 cut(s) 3, 62, 208, 286, 320, 472
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 1 cut(s) 212
MluCI AATT 3 cut(s) 204, 260, 484
MlyI GAGTC 2 cut(s) 57, 227
MnlI CCTC 7 cut(s) 21, 258, 274, 280, 306, 366, 439
MseI TTAA 2 cut(s) 432, 487
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 77
NdeII GATC 5 cut(s) 34, 198, 212, 226, 380
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 1 cut(s) 420
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 2 cut(s) 57, 227
PpsI GAGTC 2 cut(s) 57, 227
Psp1406I AACGTT 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 212
SaqAI TTAA 2 cut(s) 432, 487
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 5 cut(s) 34, 198, 212, 226, 380
SchI GAGTC 2 cut(s) 57, 227
ScrFI CCNGG 1 cut(s) 77
SfaNI GCATC 2 cut(s) 128, 153
SfcI CTRYAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 204, 260, 484
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 75
TaiI ACGT 1 cut(s) 443
TaqI TCGA 6 cut(s) 33, 122, 222, 231, 402, 444
TasI AATT 3 cut(s) 204, 260, 484
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 2 cut(s) 432, 487
Tru9I TTAA 2 cut(s) 432, 487
TscAI CASTG 1 cut(s) 276
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 321, 362
TspRI CASTG 1 cut(s) 276
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.