Rmu_sc0001670.1_g000033

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001670.1
OG0010283
Physical Location & Seq
Forward (+)
159973 .. 163344
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001670.1_g000033.1.cds

Sequence Viewer

Length: 630 bp
atgattattgaagttaattggcaccctcccatcttgggttggattaagattaatactgatggtgcatggcaaagtgttttagggcgagcgggttttggtggagtttttagagattttcatggttcattccttggtgcttttgcttctaaccttgatattccttgctcggttgatgcggagtcatggcagttattcaagctattgagctggctagggttagggaatggatgcatatttggcttgagatggattcaacacttgtgcttaattttctttgagatcttcatcttgttccatggcgtttacgagtggcatgggaaatttgatcaattccagattcgttttcaggaggagaaagaatcgcaggcgaacaagtctcaggagctggcgttgaagctcgcgagcatgggggcgatggagcagcggtgcttagtgctggagcagaagatcgaggcccaaagcttcaagatctgggcgcttcggtttgctaccaaagtgatcgtagcaccttcaactgctcgaaccaccggcctgaacacccgcgtagacgagactgcaattgtagtcgctgacttcaacgccggagtcgcagacttaaacgttggagcccaacttcgaaacagtcgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

209

Amino Acids

23.52

Weight (kDa)

6.51

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 546
AccII CGCG 2 cut(s) 401, 543
AciI CCGC 4 cut(s) 89, 176, 424, 541
AclI AACGTT 1 cut(s) 600
AcsI RAATTY 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 7 cut(s) 11, 196, 254, 394, 466, 513, 577
AluBI AGCT 5 cut(s) 199, 207, 385, 397, 462
AluI AGCT 5 cut(s) 199, 207, 385, 397, 462
Alw26I GTCTC 2 cut(s) 381, 545
AlwNI CAGNNNCTG 2 cut(s) 385, 627
AoxI GGCC 2 cut(s) 453, 529
ApeKI GCWGC 1 cut(s) 421
ApoI RAATTY 1 cut(s) 320
AseI ATTAAT 1 cut(s) 51
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 454
AsuII TTCGAA 1 cut(s) 616
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 433
BccI CCATC 4 cut(s) 38, 53, 240, 409
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 381, 545
BfaI CTAG 1 cut(s) 212
BfoI RGCGCY 1 cut(s) 479
BglII AGATCT 2 cut(s) 279, 468
BisI GCNGC 1 cut(s) 422
BlsI GCNGC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 2 cut(s) 23, 607
BmsI GCATC 2 cut(s) 163, 218
BpmI CTGGAG 1 cut(s) 458
Bpu14I TTCGAA 1 cut(s) 616
BpuEI CTTGAG 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 130, 295
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 527
Bse8I GATNNNNATC 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 130, 295
BseGI GGATG 1 cut(s) 233
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 392
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 433
Bsh1236I CGCG 2 cut(s) 401, 543
BshFI GGCC 2 cut(s) 455, 531
BshNI GGYRCC 1 cut(s) 21
BsiSI CCGG 2 cut(s) 528, 582
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 381, 545
BsnI GGCC 2 cut(s) 455, 531
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 5 cut(s) 279, 325, 447, 468, 498
Bsp19I CCATGG 1 cut(s) 295
Bsp68I TCGCGA 1 cut(s) 401
BspACI CCGC 4 cut(s) 89, 176, 424, 541
BspANI GGCC 2 cut(s) 455, 531
BspCNI CTCAG 1 cut(s) 391
BspFNI CGCG 2 cut(s) 401, 543
BspLI GGNNCC 2 cut(s) 23, 607
BspT104I TTCGAA 1 cut(s) 616
BspT107I GGYRCC 1 cut(s) 21
BsrBI CCGCTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 527
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 2 cut(s) 130, 295
BssMI GATC 5 cut(s) 279, 325, 447, 468, 498
BssT1I CCWWGG 2 cut(s) 130, 295
Bst4CI ACNGT 1 cut(s) 623
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 6 cut(s) 87, 209, 366, 387, 399, 403
BstDEI CTNAG 2 cut(s) 378, 430
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 2 cut(s) 401, 543
BstH2I RGCGCY 1 cut(s) 479
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 5 cut(s) 282, 328, 450, 471, 501
BstMAI GTCTC 2 cut(s) 381, 545
BstMBI GATC 5 cut(s) 279, 325, 447, 468, 498
BstMWI GCNNNNNNNGC 2 cut(s) 237, 587
BstUI CGCG 2 cut(s) 401, 543
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 2 cut(s) 279, 468
BstYI RGATCY 2 cut(s) 279, 468
BsuRI GGCC 2 cut(s) 455, 531
BtgI CCRYGG 1 cut(s) 295
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 233
BtuMI TCGCGA 1 cut(s) 401
Cac8I GCNNGC 6 cut(s) 87, 209, 366, 387, 399, 403
CaiI CAGNNNCTG 2 cut(s) 385, 627
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 1 cut(s) 454
CviAII CATG 6 cut(s) 66, 119, 183, 296, 314, 406
DdeI CTNAG 2 cut(s) 378, 430
DpnI GATC 5 cut(s) 281, 327, 449, 470, 500
DpnII GATC 5 cut(s) 279, 325, 447, 468, 498
Eco130I CCWWGG 2 cut(s) 130, 295
Eco24I GRGCYC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 130, 295
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 130, 295
FaeI CATG 6 cut(s) 69, 122, 186, 299, 317, 409
FaiI YATR 7 cut(s) 67, 120, 184, 233, 297, 315, 407
FatI CATG 6 cut(s) 65, 118, 182, 295, 313, 405
FauI CCCGC 2 cut(s) 82, 548
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 1 cut(s) 422
FokI GGATG 1 cut(s) 240
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 1 cut(s) 422
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 458
HaeII RGCGCY 1 cut(s) 479
HaeIII GGCC 2 cut(s) 455, 531
HapII CCGG 2 cut(s) 528, 582
HhaI GCGC 1 cut(s) 478
Hin1II CATG 6 cut(s) 69, 122, 186, 299, 317, 409
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 5 cut(s) 179, 250, 337, 359, 585
HpaII CCGG 2 cut(s) 528, 582
Hpy166II GTNNAC 2 cut(s) 304, 547
Hpy188III TCNNGA 5 cut(s) 334, 347, 380, 400, 466
Hpy8I GTNNAC 2 cut(s) 304, 547
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 3 cut(s) 65, 231, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 587
HpyF3I CTNAG 2 cut(s) 378, 430
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 6 cut(s) 69, 122, 186, 299, 317, 409
HspAI GCGC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 279, 325, 447, 468, 498
LmnI GCTCC 4 cut(s) 382, 418, 439, 605
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 163, 218
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 600
MalI GATC 5 cut(s) 281, 327, 449, 470, 500
MbiI CCGCTC 1 cut(s) 89
MboI GATC 5 cut(s) 279, 325, 447, 468, 498
MboII GAAGA 2 cut(s) 274, 457
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 2 cut(s) 279, 468
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 5 cut(s) 16, 267, 320, 329, 558
MlyI GAGTC 2 cut(s) 188, 594
MmeI TCCRAC 2 cut(s) 20, 583
MnlI CCTC 3 cut(s) 36, 343, 445
Mph1103I ATGCAT 1 cut(s) 233
MseI TTAA 5 cut(s) 15, 45, 51, 266, 596
MspA1I CMGCKG 1 cut(s) 424
MspI CCGG 2 cut(s) 528, 582
MunI CAATTG 1 cut(s) 558
MvnI CGCG 2 cut(s) 401, 543
MwoI GCNNNNNNNGC 2 cut(s) 237, 587
NcoI CCATGG 1 cut(s) 295
NdeII GATC 5 cut(s) 279, 325, 447, 468, 498
NlaIII CATG 6 cut(s) 69, 122, 186, 299, 317, 409
NlaIV GGNNCC 2 cut(s) 23, 607
NruI TCGCGA 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 233
NspV TTCGAA 1 cut(s) 616
PfeI GAWTC 3 cut(s) 250, 337, 359
PkrI GCNGC 1 cut(s) 423
PleI GAGTC 2 cut(s) 187, 593
PpsI GAGTC 2 cut(s) 187, 593
PshBI ATTAAT 1 cut(s) 51
Psp1406I AACGTT 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 23, 607
PspPI GGNCC 1 cut(s) 454
PstNI CAGNNNCTG 2 cut(s) 385, 627
PsuI RGATCY 2 cut(s) 279, 468
RruI TCGCGA 1 cut(s) 401
SaqAI TTAA 5 cut(s) 15, 45, 51, 266, 596
SatI GCNGC 1 cut(s) 422
Sau3AI GATC 5 cut(s) 279, 325, 447, 468, 498
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 2 cut(s) 188, 594
SduI GDGCHC 1 cut(s) 610
SetI ASST 8 cut(s) 153, 201, 209, 387, 399, 464, 511, 603
SfaNI GCATC 2 cut(s) 163, 218
SfuI TTCGAA 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 241
SmoI CTYRAG 1 cut(s) 241
Sse9I AATT 5 cut(s) 16, 267, 320, 329, 558
SsiI CCGC 4 cut(s) 89, 176, 424, 541
SspMI CTAG 1 cut(s) 212
StyI CCWWGG 2 cut(s) 130, 295
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 603
TaqI TCGA 3 cut(s) 450, 520, 616
TasI AATT 5 cut(s) 16, 267, 320, 329, 558
TfiI GAWTC 3 cut(s) 250, 337, 359
Tru1I TTAA 5 cut(s) 15, 45, 51, 266, 596
Tru9I TTAA 5 cut(s) 15, 45, 51, 266, 596
TseI GCWGC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 107, 114, 274
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 1 cut(s) 212
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.