RLG00000032093

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010283
Physical Location & Seq
Reverse (-)
10840369 .. 10841477
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032093

Sequence Viewer

Length: 630 bp
ATGGCGCTCTCGGCGTTTCGTGACCGGCTCGAACATATGGATCACACTCGTAAACAACGTCTCTCTCTCCTCCAGGCGGAGAAAGAATCGCAGGGGAACAAGTCTCAGGAGCTGTCGTTGAAGCTAGCGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGCGGCTCGACGCGAAATACCAGAGTGATTTAGAGAAATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTCGAGGGATTGGAGAAGGAGAAGAACAGGTTTTATGAGGTCAAGGGAGCTGAAATGAAGGAGTTTAAGCAAAATGTGGAGAGGTTTGCTTGGGAATGTCAATTGCAGATTGAGAATGTGAAGAATGGTATCAATGAGGTTAAGTCAAGCTTTGTGGAATTTCAAGGCAATGACAATTGCACAAGTAACTGTGAGATAGCTGCAGCTGAGAAGAGAAAGTCTGAGCTTTTGGCTATGAAGGAAGAGGTGAACAGAAAGCTGGCTTCTAATTACCAAACAAGAGCCCGATTGCAAAAGCAGCTTCAGACCATTCTAATTGCCAATCCTCTGCAGAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

210

Amino Acids

24.24

Weight (kDa)

8.58

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 21 - 140 1.2e-20 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 2 cut(s) 179, 233
AciI CCGC 4 cut(s) 77, 151, 179, 223
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 4 cut(s) 121, 193, 271, 452
AjnI CCWGG 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 65, 108
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 148, 488, 491, 586
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 2 cut(s) 7, 205
AspS9I GGNCC 2 cut(s) 181, 210
AsuHPI GGTGA 1 cut(s) 547
AsuNHI GCTAGC 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 2 cut(s) 291, 574
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 4 cut(s) 160, 475, 503, 598
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 65, 108
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 2 cut(s) 489, 617
BfoI RGCGCY 2 cut(s) 8, 206
BglII AGATCT 1 cut(s) 195
BisI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
BlsI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 181, 210
BmrFI CCNGG 1 cut(s) 74
BmtI GCTAGC 1 cut(s) 128
BpmI CTGGAG 2 cut(s) 56, 185
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 3 cut(s) 119, 486, 501
BseRI GAGGAG 2 cut(s) 59, 299
BseXI GCAGC 4 cut(s) 160, 475, 503, 598
Bsh1236I CGCG 2 cut(s) 179, 233
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 25, 208
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 65, 108
BsmBI CGTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 291, 574
Bsp143I GATC 3 cut(s) 40, 174, 195
BspACI CCGC 4 cut(s) 77, 151, 179, 223
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 3 cut(s) 118, 487, 502
BspFNI CGCG 2 cut(s) 179, 233
BspMAI CTGCAG 2 cut(s) 493, 621
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssMI GATC 3 cut(s) 40, 174, 195
Bst2UI CCWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 479
Bst6I CTCTTC 3 cut(s) 266, 494, 525
BstC8I GCNNGC 3 cut(s) 126, 130, 549
BstDEI CTNAG 3 cut(s) 105, 495, 510
BstFNI CGCG 2 cut(s) 179, 233
BstH2I RGCGCY 2 cut(s) 8, 206
BstHHI GCGC 2 cut(s) 7, 205
BstKTI GATC 3 cut(s) 43, 177, 198
BstMAI GTCTC 2 cut(s) 65, 108
BstMBI GATC 3 cut(s) 40, 174, 195
BstMWI GCNNNNNNNGC 2 cut(s) 11, 586
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 489, 617
BstUI CGCG 2 cut(s) 179, 233
BstV1I GCAGC 4 cut(s) 160, 475, 503, 598
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 126, 130, 549
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 7, 205
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 181, 210
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 1 cut(s) 133
DdeI CTNAG 3 cut(s) 105, 495, 510
DpnI GATC 3 cut(s) 42, 176, 197
DpnII GATC 3 cut(s) 40, 174, 195
Eam1104I CTCTTC 3 cut(s) 266, 494, 525
EarI CTCTTC 3 cut(s) 266, 494, 525
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 289
Eco24I GRGCYC 2 cut(s) 291, 574
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 217
EcoT38I GRGCYC 2 cut(s) 291, 574
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 1 cut(s) 136
FaiI YATR 6 cut(s) 36, 38, 134, 324, 524, 628
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 1 cut(s) 132
FauNDI CATATG 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
FriOI GRGCYC 2 cut(s) 291, 574
Fsp4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
FspBI CTAG 1 cut(s) 125
GlaI GCGC 2 cut(s) 6, 204
GluI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GsuI CTGGAG 2 cut(s) 56, 185
HaeII RGCGCY 2 cut(s) 8, 206
HaeIII GGCC 1 cut(s) 182
HapII CCGG 2 cut(s) 25, 208
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 7, 205
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 2 cut(s) 5, 203
HinP1I GCGC 2 cut(s) 5, 203
HindIII AAGCTT 2 cut(s) 187, 436
HinfI GANTC 1 cut(s) 86
HpaII CCGG 2 cut(s) 25, 208
HphI GGTGA 1 cut(s) 547
Hpy166II GTNNAC 2 cut(s) 53, 538
Hpy188I TCNGA 3 cut(s) 214, 511, 594
Hpy188III TCNNGA 3 cut(s) 20, 107, 193
Hpy8I GTNNAC 2 cut(s) 53, 538
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 298, 340, 520, 616
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 5 cut(s) 394, 468, 491, 580, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 586
HpyF3I CTNAG 3 cut(s) 105, 495, 510
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 2 cut(s) 5, 203
Kzo9I GATC 3 cut(s) 40, 174, 195
LmnI GCTCC 6 cut(s) 109, 145, 166, 210, 286, 335
Lsp1109I GCAGC 4 cut(s) 160, 475, 503, 598
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 20, 473
MalI GATC 3 cut(s) 42, 176, 197
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 40, 174, 195
MboII GAAGA 6 cut(s) 184, 283, 322, 421, 511, 542
MfeI CAATTG 2 cut(s) 389, 463
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 2 cut(s) 291, 574
MluCI AATT 6 cut(s) 257, 389, 446, 463, 556, 603
MseI TTAA 2 cut(s) 354, 429
MspA1I CMGCKG 2 cut(s) 151, 494
MspI CCGG 2 cut(s) 25, 208
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 2 cut(s) 389, 463
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 179, 233
MwoI GCNNNNNNNGC 2 cut(s) 11, 586
NdeI CATATG 1 cut(s) 36
NdeII GATC 3 cut(s) 40, 174, 195
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 1 cut(s) 20
PaeR7I CTCGAG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 225
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 2 cut(s) 181, 210
PspXI VCTCGAGB 1 cut(s) 290
PstI CTGCAG 2 cut(s) 493, 621
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 494
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 354, 429
SatI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
Sau3AI GATC 3 cut(s) 40, 174, 195
Sau96I GGNCC 2 cut(s) 181, 210
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 291, 574
SfcI CTRYAG 2 cut(s) 489, 617
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 6 cut(s) 257, 389, 446, 463, 556, 603
SsiI CCGC 4 cut(s) 77, 151, 179, 223
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 61
TaqI TCGA 4 cut(s) 30, 219, 228, 291
TasI AATT 6 cut(s) 257, 389, 446, 463, 556, 603
TauI GCSGC 2 cut(s) 182, 226
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 354, 429
Tru9I TTAA 2 cut(s) 354, 429
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 4 cut(s) 148, 488, 491, 586
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 2 cut(s) 359, 539
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 290
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.