Rh5AG110800

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0010283
Physical Location & Seq
Reverse (-)
10181752 .. 10182891
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG110800.1

Sequence Viewer

Length: 678 bp
ATGTCATTAGGCGCTTCCGTCTTTCCGAGTCCCTCTTTCCGATCAGCAATGGCGCTCTCGGCGTTTCGTGACCGACTCGAACACATGGATCACACTCGTCACCAACGTCTCTCTCTCCTCCAGGCGGAGAAAGAATGGCAGGCGAACAAGTCTCAGGAGCTGGCGTTGAAGCTCGCGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGCGGCTCGACGCGAAATACCAGAGTGATTTAGAGAAATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGGATTGGAAAAGGTGAGGAACAGGTTTTATGAGGTGAAGGGAGCTGAAATGAAGGAGTTTAAGCAAAATGTGGAGAGTTTTGCTTGGGAATGTCAATTGCAGATTGAGAATTTGAAGAATGGTATCAATGAGGTTAAGTCAAGCTTTGTGGAATTTCAAGGCAGTGACAATTGCACAAGTAACTGTGAGATAGCTGCAGCTGAGAAGAGAAAGTCTGAGCTTTTGGCTATGAAGGAAGAGGTGAACAGAAAGCTGGCTTCTAATTACCAAACAAGAGCCCGATTGCAAAAGCAGCTTCAGACCATTCTAATTGCCAATCCTCTGCAGAAGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

225

Amino Acids

25.92

Weight (kDa)

8.6

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 37 - 156 5.2e-23 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 271
AccII CGCG 3 cut(s) 176, 227, 281
AciI CCGC 4 cut(s) 125, 199, 227, 271
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 451, 494
AcuI CTGAAG 1 cut(s) 623
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 5 cut(s) 169, 241, 319, 457, 500
AjnI CCWGG 1 cut(s) 120
Alw26I GTCTC 2 cut(s) 113, 156
AlwI GGATC 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 160
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 4 cut(s) 196, 536, 539, 634
ApoI RAATTY 2 cut(s) 451, 494
AspLEI GCGC 3 cut(s) 14, 55, 253
AspS9I GGNCC 2 cut(s) 229, 258
AsuHPI GGTGA 4 cut(s) 92, 367, 388, 595
AvaII GGWCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 622
BbvI GCAGC 4 cut(s) 208, 523, 551, 646
BccI CCATC 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 113, 156
BfmI CTRYAG 2 cut(s) 537, 665
BfoI RGCGCY 3 cut(s) 15, 56, 254
BglII AGATCT 1 cut(s) 243
BisI GCNGC 6 cut(s) 197, 228, 272, 537, 540, 635
BlsI GCNGC 6 cut(s) 198, 229, 273, 538, 541, 636
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 229, 258
BmrFI CCNGG 1 cut(s) 122
BpmI CTGGAG 2 cut(s) 104, 233
BpuEI CTTGAG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 255
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 3 cut(s) 167, 534, 549
BseRI GAGGAG 2 cut(s) 107, 347
BseXI GCAGC 4 cut(s) 208, 523, 551, 646
Bsh1236I CGCG 3 cut(s) 176, 227, 281
BshFI GGCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 113, 156
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 4 cut(s) 41, 88, 222, 243
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 4 cut(s) 125, 199, 227, 271
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 3 cut(s) 166, 535, 550
BspFNI CGCG 3 cut(s) 176, 227, 281
BspMAI CTGCAG 2 cut(s) 541, 669
BspPI GGATC 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 54
BssMI GATC 4 cut(s) 41, 88, 222, 243
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 527
Bst6I CTCTTC 3 cut(s) 314, 542, 573
BstC8I GCNNGC 5 cut(s) 141, 162, 174, 178, 597
BstDEI CTNAG 3 cut(s) 153, 543, 558
BstFNI CGCG 3 cut(s) 176, 227, 281
BstH2I RGCGCY 3 cut(s) 15, 56, 254
BstHHI GCGC 3 cut(s) 14, 55, 253
BstKTI GATC 4 cut(s) 44, 91, 225, 246
BstMAI GTCTC 2 cut(s) 113, 156
BstMBI GATC 4 cut(s) 41, 88, 222, 243
BstMWI GCNNNNNNNGC 2 cut(s) 59, 634
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 2 cut(s) 537, 665
BstUI CGCG 3 cut(s) 176, 227, 281
BstV1I GCAGC 4 cut(s) 208, 523, 551, 646
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
BtuMI TCGCGA 1 cut(s) 176
Cac8I GCNNGC 5 cut(s) 141, 162, 174, 178, 597
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 3 cut(s) 14, 55, 253
Cfr13I GGNCC 2 cut(s) 229, 258
CpoI CGGWCCG 1 cut(s) 258
CseI GACGC 1 cut(s) 287
CspCI CAANNNNNGTGG 2 cut(s) 471, 506
CspI CGGWCCG 1 cut(s) 258
CviAII CATG 2 cut(s) 85, 181
DdeI CTNAG 3 cut(s) 153, 543, 558
DpnI GATC 4 cut(s) 43, 90, 224, 245
DpnII GATC 4 cut(s) 41, 88, 222, 243
Eam1104I CTCTTC 3 cut(s) 314, 542, 573
EarI CTCTTC 3 cut(s) 314, 542, 573
EciI GGCGGA 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 622
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 622
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 2 cut(s) 88, 184
FaiI YATR 5 cut(s) 86, 182, 372, 572, 676
FalI AAGNNNNNCTT 2 cut(s) 470, 502
FaqI GGGAC 1 cut(s) 15
FatI CATG 2 cut(s) 84, 180
Fnu4HI GCNGC 6 cut(s) 197, 228, 272, 537, 540, 635
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 6 cut(s) 197, 228, 272, 537, 540, 635
GlaI GCGC 3 cut(s) 13, 54, 252
GluI GCNGC 6 cut(s) 197, 228, 272, 537, 540, 635
GsuI CTGGAG 2 cut(s) 104, 233
HaeII RGCGCY 3 cut(s) 15, 56, 254
HaeIII GGCC 1 cut(s) 230
HapII CCGG 1 cut(s) 256
HgaI GACGC 1 cut(s) 287
HhaI GCGC 3 cut(s) 14, 55, 253
Hin1II CATG 2 cut(s) 88, 184
Hin6I GCGC 3 cut(s) 12, 53, 251
HinP1I GCGC 3 cut(s) 12, 53, 251
HindIII AAGCTT 2 cut(s) 235, 484
HinfI GANTC 2 cut(s) 28, 75
HpaII CCGG 1 cut(s) 256
HphI GGTGA 4 cut(s) 92, 367, 388, 595
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 27, 41, 262, 559, 642
Hpy188III TCNNGA 4 cut(s) 68, 155, 175, 241
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 373, 388, 568
HpyCH4III ACNGT 1 cut(s) 527
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 5 cut(s) 442, 516, 539, 628, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 634
HpyF3I CTNAG 3 cut(s) 153, 543, 558
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 2 cut(s) 88, 184
HspAI GCGC 3 cut(s) 12, 53, 251
Kzo9I GATC 4 cut(s) 41, 88, 222, 243
LmnI GCTCC 6 cut(s) 157, 193, 214, 258, 334, 383
Lsp1109I GCAGC 4 cut(s) 208, 523, 551, 646
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 4 cut(s) 68, 98, 506, 521
MalI GATC 4 cut(s) 43, 90, 224, 245
MbiI CCGCTC 1 cut(s) 271
MboI GATC 4 cut(s) 41, 88, 222, 243
MboII GAAGA 5 cut(s) 232, 331, 469, 559, 590
MfeI CAATTG 2 cut(s) 437, 511
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 7 cut(s) 305, 437, 451, 494, 511, 604, 651
MlyI GAGTC 2 cut(s) 37, 69
MseI TTAA 2 cut(s) 402, 477
MspA1I CMGCKG 2 cut(s) 199, 542
MspI CCGG 1 cut(s) 256
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 2 cut(s) 437, 511
MvaI CCWGG 1 cut(s) 122
MvnI CGCG 3 cut(s) 176, 227, 281
MwoI GCNNNNNNNGC 2 cut(s) 59, 634
NdeII GATC 4 cut(s) 41, 88, 222, 243
NlaIII CATG 2 cut(s) 88, 184
NmeAIII GCCGAG 1 cut(s) 38
NmuCI GTSAC 3 cut(s) 68, 98, 506
NruI TCGCGA 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 103, 273
PkrI GCNGC 6 cut(s) 198, 229, 273, 538, 541, 636
PleI GAGTC 2 cut(s) 36, 69
PpsI GAGTC 2 cut(s) 36, 69
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 2 cut(s) 229, 258
PstI CTGCAG 2 cut(s) 541, 669
PstNI CAGNNNCTG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 542
RruI TCGCGA 1 cut(s) 176
Rsr2I CGGWCCG 1 cut(s) 258
RsrII CGGWCCG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 402, 477
SatI GCNGC 6 cut(s) 197, 228, 272, 537, 540, 635
Sau3AI GATC 4 cut(s) 41, 88, 222, 243
Sau96I GGNCC 2 cut(s) 229, 258
SchI GAGTC 2 cut(s) 37, 69
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 1 cut(s) 622
SfcI CTRYAG 2 cut(s) 537, 665
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 7 cut(s) 305, 437, 451, 494, 511, 604, 651
SsiI CCGC 4 cut(s) 125, 199, 227, 271
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 527
TaiI ACGT 1 cut(s) 109
TaqI TCGA 3 cut(s) 78, 267, 276
TaqII GACCGA 1 cut(s) 87
TasI AATT 7 cut(s) 305, 437, 451, 494, 511, 604, 651
TauI GCSGC 2 cut(s) 230, 274
Tru1I TTAA 2 cut(s) 402, 477
Tru9I TTAA 2 cut(s) 402, 477
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 3 cut(s) 68, 98, 506
TseI GCWGC 4 cut(s) 196, 536, 539, 634
Tsp45I GTSAC 3 cut(s) 68, 98, 506
TspDTI ATGAA 2 cut(s) 407, 587
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 451, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.