Rh4DG424600

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010283
Physical Location & Seq
Reverse (-)
63101404 .. 63101719
316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG424600.1

Sequence Viewer

Length: 192 bp
ATGGATCACATCGTAACCAACGCGGAGAAAGAATCTCAGGCGAACAAGTCTCAGGAGCTGGCATTGAAGCTCGCGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGAGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGTTTCTTCGTCCCCAGTCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

63

Amino Acids

7.2

Weight (kDa)

5.72

Isoelectric Point (pI)

72.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 6 - 42 4.2e-06 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 23, 74
AciI CCGC 2 cut(s) 23, 97
AclWI GGATC 1 cut(s) 12
AgsI TTSAA 2 cut(s) 67, 139
AluBI AGCT 3 cut(s) 58, 70, 135
AluI AGCT 3 cut(s) 58, 70, 135
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 94
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 127, 156
AvaII GGWCC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 152
BglII AGATCT 1 cut(s) 141
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 2 cut(s) 127, 156
BmrI ACTGGG 1 cut(s) 175
BmuI ACTGGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 131
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bse1I ACTGG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 50, 65
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 2 cut(s) 23, 74
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 1 cut(s) 162
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 162
BsnI GGCC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 4, 120, 141, 186
Bsp68I TCGCGA 1 cut(s) 74
BspACI CCGC 2 cut(s) 23, 97
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 2 cut(s) 49, 64
BspFNI CGCG 2 cut(s) 23, 74
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 181
BssMI GATC 4 cut(s) 4, 120, 141, 186
BstC8I GCNNGC 3 cut(s) 60, 72, 76
BstDEI CTNAG 2 cut(s) 36, 51
BstFNI CGCG 2 cut(s) 23, 74
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 7, 123, 144, 189
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 4 cut(s) 4, 120, 141, 186
BstUI CGCG 2 cut(s) 23, 74
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 101
BtuMI TCGCGA 1 cut(s) 74
Cac8I GCNNGC 3 cut(s) 60, 72, 76
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 127, 156
CpoI CGGWCCG 1 cut(s) 156
CspI CGGWCCG 1 cut(s) 156
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 58, 70, 128, 135
CviKI_1 RGCY 4 cut(s) 58, 70, 128, 135
DdeI CTNAG 2 cut(s) 36, 51
DpnI GATC 4 cut(s) 6, 122, 143, 188
DpnII GATC 4 cut(s) 4, 120, 141, 186
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 156
EcoRV GATATC 1 cut(s) 163
FaeI CATG 1 cut(s) 82
FaiI YATR 1 cut(s) 80
FaqI GGGAC 1 cut(s) 162
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 128
HapII CCGG 1 cut(s) 154
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 160, 191
Hpy188III TCNNGA 3 cut(s) 53, 73, 139
HpyF3I CTNAG 2 cut(s) 36, 51
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 4, 120, 141, 186
LmnI GCTCC 4 cut(s) 55, 91, 112, 156
LpnPI CCDG 6 cut(s) 23, 38, 44, 95, 130, 167
Lsp1109I GCAGC 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 6, 122, 143, 188
MboI GATC 4 cut(s) 4, 120, 141, 186
MboII GAAGA 2 cut(s) 130, 164
MflI RGATCY 1 cut(s) 141
MnlI CCTC 1 cut(s) 118
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 1 cut(s) 154
MvnI CGCG 2 cut(s) 23, 74
NdeII GATC 4 cut(s) 4, 120, 141, 186
NlaIII CATG 1 cut(s) 82
NruI TCGCGA 1 cut(s) 74
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 127, 156
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 141
RruI TCGCGA 1 cut(s) 74
Rsr2I CGGWCCG 1 cut(s) 156
RsrII CGGWCCG 1 cut(s) 156
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 4 cut(s) 4, 120, 141, 186
Sau96I GGNCC 2 cut(s) 127, 156
SetI ASST 3 cut(s) 60, 72, 137
SinI GGWCC 1 cut(s) 156
SsiI CCGC 2 cut(s) 23, 97
TaqI TCGA 3 cut(s) 123, 165, 185
TfiI GAWTC 1 cut(s) 32
TseI GCWGC 1 cut(s) 94
VpaK11BI GGWCC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.