Prupe.4G081100_v2.0.a1

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010283
Physical Location & Seq
Reverse (-)
3953494 .. 3954907
1414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G081100.1

Sequence Viewer

Length: 642 bp
ATGGCGCTCTCTGCTGCGTTTCGGGAACGACTTGAGCACATGGAGCATACTCGTAACCAACGCCTCTCTCTCCTCCAGGCAGAGAAAGAAGTGCAGGAGAACAAGTCTCAGGCGTTGGTTTTGAGGATCGCAAGCATGAGGGCCACGGAGCAGAGGTGCTTGGCGCTCGACCAAAAGATCGCATCGCAAAGCTTCAAGATTTGGGCGCTGAGGTCCGAGATCGATCGCCTCGACGAGAAAAATCAAACCGATTCACATCAATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGACTTGGAGAAGGAGAAGAACAGGTTTTATGAACTGAAGGGCTCTGAAATGAAGGAGTTCAAGCAAAATGTGGAGAGGTTTGCTTTTGAATGCCAAATGCAAGTTCAAAATTTGAAGAAGGGCATCAATGAGATTCAATCGAGCTTTGTCAAATTCCAAGGCAGTGACAGATGCACAAGTGATTCTGAGATAGCTGCGGCTGAAATGAGAAAGTCCGAGCTTTTAGCTATGAAAGAGGAGCTTGATGGAAAGTTGGCTTCTAATTACCAAATTAGAGCCCAATTGCAAAAGCAGCTTCAAACCATTCTAACCAAACACAAACAAGACACAAGTTACAAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

214

Amino Acids

24.91

Weight (kDa)

7.69

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 406, 449
AcuI CTGAAG 1 cut(s) 353
AgsI TTSAA 8 cut(s) 196, 274, 358, 386, 404, 412, 434, 596
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 8 cut(s) 192, 292, 441, 491, 517, 524, 538, 592
AluI AGCT 8 cut(s) 192, 292, 441, 491, 517, 524, 538, 592
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 1 cut(s) 134
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 3 cut(s) 14, 491, 589
ApoI RAATTY 2 cut(s) 406, 449
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 3 cut(s) 7, 166, 208
AspS9I GGNCC 2 cut(s) 141, 213
AvaII GGWCC 1 cut(s) 213
BanII GRGCYC 2 cut(s) 341, 577
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 478, 601
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 111
BfoI RGCGCY 3 cut(s) 8, 167, 209
BisI GCNGC 4 cut(s) 15, 492, 495, 590
BlsI GCNGC 4 cut(s) 16, 493, 496, 591
Bme1390I CCNGG 1 cut(s) 77
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 141, 213
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 3 cut(s) 191, 429, 458
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 53, 314
Bsa29I ATCGAT 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 144, 454
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 140, 170
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 1 cut(s) 77
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 144, 454
BseJI GATNNNNATC 1 cut(s) 255
BseMII CTCAG 3 cut(s) 122, 200, 474
BseRI GAGGAG 3 cut(s) 62, 302, 548
BseXI GCAGC 2 cut(s) 478, 601
BsgI GTGCAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 222
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 1 cut(s) 143
Bsp1286I GDGCHC 3 cut(s) 39, 341, 577
Bsp143I GATC 4 cut(s) 126, 177, 219, 223
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 3 cut(s) 121, 201, 475
BspDI ATCGAT 1 cut(s) 222
BspPI GGATC 1 cut(s) 134
BssECI CCNNGG 2 cut(s) 144, 454
BssMI GATC 4 cut(s) 126, 177, 219, 223
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 77
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 108, 209, 483
BstDSI CCRYGG 1 cut(s) 144
BstH2I RGCGCY 3 cut(s) 8, 167, 209
BstHHI GCGC 3 cut(s) 7, 166, 208
BstKTI GATC 4 cut(s) 129, 180, 222, 226
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 4 cut(s) 126, 177, 219, 223
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 11, 43, 589
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 478, 601
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 143
BsuTUI ATCGAT 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 3 cut(s) 7, 166, 208
Cfr13I GGNCC 2 cut(s) 141, 213
ClaI ATCGAT 1 cut(s) 222
CviAII CATG 2 cut(s) 40, 136
DdeI CTNAG 3 cut(s) 108, 209, 483
DpnI GATC 4 cut(s) 128, 179, 221, 225
DpnII GATC 4 cut(s) 126, 177, 219, 223
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 2 cut(s) 341, 577
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 2 cut(s) 341, 577
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 2 cut(s) 43, 139
FaiI YATR 5 cut(s) 41, 48, 137, 327, 527
FalI AAGNNNNNCTT 2 cut(s) 522, 554
FatI CATG 2 cut(s) 39, 135
Fnu4HI GCNGC 4 cut(s) 15, 492, 495, 590
FriOI GRGCYC 2 cut(s) 341, 577
Fsp4HI GCNGC 4 cut(s) 15, 492, 495, 590
GlaI GCGC 3 cut(s) 6, 165, 207
GluI GCNGC 4 cut(s) 15, 492, 495, 590
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 3 cut(s) 8, 167, 209
HaeIII GGCC 1 cut(s) 143
HhaI GCGC 3 cut(s) 7, 166, 208
Hin1II CATG 2 cut(s) 43, 139
Hin6I GCGC 3 cut(s) 5, 164, 206
HinP1I GCGC 3 cut(s) 5, 164, 206
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 3 cut(s) 251, 430, 479
Hpy188I TCNGA 4 cut(s) 217, 343, 484, 514
Hpy188III TCNNGA 3 cut(s) 23, 196, 639
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 4 cut(s) 301, 328, 343, 409
HpyCH4V TGCA 4 cut(s) 94, 397, 471, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 43, 589
HpyF3I CTNAG 3 cut(s) 108, 209, 483
Hsp92II CATG 2 cut(s) 43, 139
HspAI GCGC 3 cut(s) 5, 164, 206
Kzo9I GATC 4 cut(s) 126, 177, 219, 223
LmnI GCTCC 4 cut(s) 43, 148, 289, 535
LpnPI CCDG 5 cut(s) 62, 80, 89, 95, 304
Lsp1109I GCAGC 2 cut(s) 478, 601
LweI GCATC 3 cut(s) 191, 429, 458
MaeIII GTNAC 3 cut(s) 53, 461, 629
MalI GATC 4 cut(s) 128, 179, 221, 225
MboI GATC 4 cut(s) 126, 177, 219, 223
MboII GAAGA 3 cut(s) 286, 325, 424
MfeI CAATTG 2 cut(s) 260, 578
MhlI GDGCHC 3 cut(s) 39, 341, 577
MluCI AATT 6 cut(s) 260, 406, 449, 559, 567, 578
MroXI GAANNNNTTC 1 cut(s) 353
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 2 cut(s) 260, 578
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 3 cut(s) 11, 43, 589
NdeII GATC 4 cut(s) 126, 177, 219, 223
NlaIII CATG 2 cut(s) 43, 139
NmuCI GTSAC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PctI GAATGC 1 cut(s) 392
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 3 cut(s) 251, 430, 479
PkrI GCNGC 4 cut(s) 16, 493, 496, 591
Ple19I CGATCG 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspPI GGNCC 2 cut(s) 141, 213
PvuI CGATCG 1 cut(s) 226
SatI GCNGC 4 cut(s) 15, 492, 495, 590
Sau3AI GATC 4 cut(s) 126, 177, 219, 223
Sau96I GGNCC 2 cut(s) 141, 213
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 3 cut(s) 39, 341, 577
SfaNI GCATC 3 cut(s) 191, 429, 458
SinI GGWCC 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 32, 293
SmoI CTYRAG 2 cut(s) 32, 293
Sse9I AATT 6 cut(s) 260, 406, 449, 559, 567, 578
SsiI CCGC 1 cut(s) 494
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 454
TaqI TCGA 4 cut(s) 168, 222, 231, 437
TasI AATT 6 cut(s) 260, 406, 449, 559, 567, 578
TauI GCSGC 1 cut(s) 497
TfiI GAWTC 3 cut(s) 251, 430, 479
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 3 cut(s) 14, 491, 589
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 3 cut(s) 342, 362, 542
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 2 cut(s) 406, 449
XmnI GAANNNNTTC 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.