FvH4_3g05500

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010283
Physical Location & Seq
Forward (+)
3219829 .. 3221191
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05500.t1

Sequence Viewer

Length: 624 bp
ATGGCGCTCTCGGCGTTTCGTGACCGGCTCGAACACATGGAGCACACTCGTAACCAACGCCTCTCACTCCTCCAGGCGGAGAAAGAAGCTCAGGCGAACAAGTCTCAGGAGCTGGCGTTGAAGCTCGCGACCATGGGAGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAAATCTGGGCGCTCCGGTCCGAGATCGAGCGGCTCGACTCGAAATCTCAGAACGATTCTGAGAAACTGAGGGTTTTGAAGAGCGAGGTGGAGGAGCTTGAGGAATTGGAGAAGGAGAAGAAGAGGTTTTATGAGGTGAAGGGATCTGAAATGAAGGAGTTTAAGCAAAATGTGGAGAGGTTTGCTTGGGAATGTCAATTTCAGATTGAGAATTTGAAGAATGGCTTCAATGAGGTCAAGTCAAGGTTTGTCAAATTTCAAGGCAGTGACAATTGCACAAGTAACAATGAGGTAGCTGCAGCTGAGAAGAGAAAGTGTGAGCTTTTAGCCATGAAGGAAGAGGTGAACAGAAAGCTGGTATCTAATTACCAAACAAGAGCCCGATTGCAAAAGCAGCTTCAGGACATTCTAATTGCCAATCCTCAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

208

Amino Acids

24.27

Weight (kDa)

8.59

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 21 - 138 1.7e-22 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 2 cut(s) 128, 179
AciI CCGC 4 cut(s) 77, 151, 179, 223
AclWI GGATC 1 cut(s) 343
AcsI RAATTY 2 cut(s) 403, 446
AcuI CTGAAG 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 6 cut(s) 121, 193, 271, 409, 421, 452
AjnI CCWGG 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 343
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 148, 488, 491, 586
ApoI RAATTY 2 cut(s) 403, 446
Asp700I GAANNNNTTC 1 cut(s) 416
AspLEI GCGC 2 cut(s) 7, 205
AspS9I GGNCC 2 cut(s) 181, 210
AsuHPI GGTGA 2 cut(s) 340, 547
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 45
BbvI GCAGC 4 cut(s) 160, 475, 503, 598
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 2 cut(s) 8, 206
BisI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
BlsI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 181, 210
BmrFI CCNGG 1 cut(s) 74
BpmI CTGGAG 2 cut(s) 56, 185
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 24
BseBI CCWGG 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 6 cut(s) 104, 119, 243, 251, 254, 486
BseRI GAGGAG 2 cut(s) 59, 299
BseXI GCAGC 4 cut(s) 160, 475, 503, 598
Bsh1236I CGCG 2 cut(s) 128, 179
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 25, 208
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 45, 574
Bsp143I GATC 3 cut(s) 174, 216, 335
Bsp19I CCATGG 1 cut(s) 132
Bsp68I TCGCGA 1 cut(s) 128
BspACI CCGC 4 cut(s) 77, 151, 179, 223
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 6 cut(s) 103, 118, 244, 252, 253, 487
BspFNI CGCG 2 cut(s) 128, 179
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 343
BspQI GCTCTTC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 3 cut(s) 174, 216, 335
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 4 cut(s) 266, 308, 494, 525
BstC8I GCNNGC 2 cut(s) 114, 126
BstDEI CTNAG 6 cut(s) 90, 105, 240, 252, 260, 495
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 2 cut(s) 128, 179
BstH2I RGCGCY 2 cut(s) 8, 206
BstHHI GCGC 2 cut(s) 7, 205
BstKTI GATC 3 cut(s) 177, 219, 338
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 3 cut(s) 174, 216, 335
BstMWI GCNNNNNNNGC 2 cut(s) 11, 586
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 2 cut(s) 128, 179
BstV1I GCAGC 4 cut(s) 160, 475, 503, 598
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 1 cut(s) 463
BtuMI TCGCGA 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 114, 126
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 7, 205
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 181, 210
CpoI CGGWCCG 1 cut(s) 210
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 3 cut(s) 37, 133, 523
DdeI CTNAG 6 cut(s) 90, 105, 240, 252, 260, 495
DpnI GATC 3 cut(s) 176, 218, 337
DpnII GATC 3 cut(s) 174, 216, 335
Eam1104I CTCTTC 4 cut(s) 266, 308, 494, 525
EarI CTCTTC 4 cut(s) 266, 308, 494, 525
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 40, 136, 526
FaiI YATR 4 cut(s) 38, 134, 324, 524
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FatI CATG 3 cut(s) 36, 132, 522
Fnu4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GlaI GCGC 2 cut(s) 6, 204
GluI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GsuI CTGGAG 2 cut(s) 56, 185
HaeII RGCGCY 2 cut(s) 8, 206
HaeIII GGCC 1 cut(s) 182
HapII CCGG 2 cut(s) 25, 208
HhaI GCGC 2 cut(s) 7, 205
Hin1II CATG 3 cut(s) 40, 136, 526
Hin6I GCGC 2 cut(s) 5, 203
HinP1I GCGC 2 cut(s) 5, 203
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 2 cut(s) 230, 248
HpaII CCGG 2 cut(s) 25, 208
HphI GGTGA 2 cut(s) 340, 547
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 5 cut(s) 214, 243, 253, 340, 396
Hpy188III TCNNGA 4 cut(s) 20, 107, 127, 593
Hpy8I GTNNAC 1 cut(s) 538
HpyAV CCTTC 4 cut(s) 298, 325, 340, 520
HpyCH4V TGCA 3 cut(s) 468, 491, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 586
HpyF3I CTNAG 6 cut(s) 90, 105, 240, 252, 260, 495
Hsp92II CATG 3 cut(s) 40, 136, 526
HspAI GCGC 2 cut(s) 5, 203
Kzo9I GATC 3 cut(s) 174, 216, 335
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 7 cut(s) 40, 109, 137, 145, 166, 210, 286
Lsp1109I GCAGC 4 cut(s) 160, 475, 503, 598
MaeIII GTNAC 4 cut(s) 20, 50, 458, 473
MalI GATC 3 cut(s) 176, 218, 337
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 174, 216, 335
MboII GAAGA 7 cut(s) 184, 283, 322, 325, 421, 511, 542
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 45, 574
MluCI AATT 8 cut(s) 296, 389, 403, 446, 463, 556, 603, 619
MlyI GAGTC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 416
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 151, 494
MspI CCGG 2 cut(s) 25, 208
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 463
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 128, 179
MwoI GCNNNNNNNGC 2 cut(s) 11, 586
NcoI CCATGG 1 cut(s) 132
NdeII GATC 3 cut(s) 174, 216, 335
NlaIII CATG 3 cut(s) 40, 136, 526
NmuCI GTSAC 2 cut(s) 20, 458
NruI TCGCGA 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 416
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 2 cut(s) 181, 210
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 335
PvuII CAGCTG 1 cut(s) 494
RruI TCGCGA 1 cut(s) 128
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
Sau3AI GATC 3 cut(s) 174, 216, 335
Sau96I GGNCC 2 cut(s) 181, 210
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 45, 574
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 8 cut(s) 296, 389, 403, 446, 463, 556, 603, 619
SsiI CCGC 4 cut(s) 77, 151, 179, 223
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 132
TaqI TCGA 4 cut(s) 30, 219, 228, 233
TasI AATT 8 cut(s) 296, 389, 403, 446, 463, 556, 603, 619
TauI GCSGC 2 cut(s) 182, 226
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 2 cut(s) 20, 458
TseI GCWGC 4 cut(s) 148, 488, 491, 586
Tsp45I GTSAC 2 cut(s) 20, 458
TspDTI ATGAA 2 cut(s) 359, 539
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 403, 446
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.