Rh5DG106200

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010283
Physical Location & Seq
Reverse (-)
9673266 .. 9674735
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG106200.1

Sequence Viewer

Length: 498 bp
ATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGCGGCTCGACGGGAAATACCAGAGTGATGTAGAGAAATTGAGGGTTTTGAAGAGTGAGGTGGAGGAGCTTGAGGGATTGGAAAAGGAGAGGAACAGGTTTTATGAGGTGAAGGGAGCTGAAATGAAGGGGTTTAAGCAAAATGTGGAGAGTTTTGCTTGGGAATGTCAATTGCAGATTGAGAATTTGAAGAATGGTATCAATGAGGTTAAGTCAAGCTTTGTGGAATTTCAAGGCGGTGACAATTGCACAAGTAACTGTGAGATAGCTGCAGCTGAGAAGAGAAAGTCTGAGCTTTTGGCTATGAAGGAAGAGGTGAACAGAAAGCTGGCTTCTAATTACCAAACAAGAGCCCGATTGCAAAAGCAGCTTCAGACCATTCTAATTGCCAATCCTCTGCAGAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

165

Amino Acids

18.99

Weight (kDa)

7.58

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 3 - 96 1.1e-15 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 1 cut(s) 47
AciI CCGC 4 cut(s) 19, 47, 91, 324
AcsI RAATTY 2 cut(s) 271, 314
AcuI CTGAAG 1 cut(s) 443
AgsI TTSAA 4 cut(s) 61, 139, 277, 320
AluBI AGCT 9 cut(s) 57, 157, 206, 306, 356, 362, 382, 415, 457
AluI AGCT 9 cut(s) 57, 157, 206, 306, 356, 362, 382, 415, 457
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 4 cut(s) 16, 356, 359, 454
ApoI RAATTY 2 cut(s) 271, 314
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 49, 78
AsuHPI GGTGA 3 cut(s) 208, 338, 415
AvaII GGWCC 1 cut(s) 78
BanII GRGCYC 1 cut(s) 442
BbvI GCAGC 4 cut(s) 28, 343, 371, 466
BccI CCATC 1 cut(s) 4
BfmI CTRYAG 2 cut(s) 357, 485
BfoI RGCGCY 1 cut(s) 74
BglII AGATCT 1 cut(s) 63
BisI GCNGC 6 cut(s) 17, 48, 92, 357, 360, 455
BlsI GCNGC 6 cut(s) 18, 49, 93, 358, 361, 456
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 49, 78
BpmI CTGGAG 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
BseMII CTCAG 2 cut(s) 354, 369
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 28, 343, 371, 466
Bsh1236I CGCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 442
Bsp143I GATC 2 cut(s) 42, 63
BspACI CCGC 4 cut(s) 19, 47, 91, 324
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 355, 370
BspFNI CGCG 1 cut(s) 47
BspMAI CTGCAG 2 cut(s) 361, 489
BsrBI CCGCTC 1 cut(s) 91
BssMI GATC 2 cut(s) 42, 63
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 3 cut(s) 134, 362, 393
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 2 cut(s) 363, 378
BstFNI CGCG 1 cut(s) 47
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 45, 66
BstMBI GATC 2 cut(s) 42, 63
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstSFI CTRYAG 2 cut(s) 357, 485
BstUI CGCG 1 cut(s) 47
BstV1I GCAGC 4 cut(s) 28, 343, 371, 466
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 49, 78
CpoI CGGWCCG 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 291, 326
CspI CGGWCCG 1 cut(s) 78
DdeI CTNAG 2 cut(s) 363, 378
DpnI GATC 2 cut(s) 44, 65
DpnII GATC 2 cut(s) 42, 63
Eam1104I CTCTTC 3 cut(s) 134, 362, 393
EarI CTCTTC 3 cut(s) 134, 362, 393
Eco24I GRGCYC 1 cut(s) 442
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 443
EcoRV GATATC 1 cut(s) 85
EcoT38I GRGCYC 1 cut(s) 442
FaiI YATR 3 cut(s) 192, 392, 496
FalI AAGNNNNNCTT 2 cut(s) 290, 322
Fnu4HI GCNGC 6 cut(s) 17, 48, 92, 357, 360, 455
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 6 cut(s) 17, 48, 92, 357, 360, 455
GlaI GCGC 1 cut(s) 72
GluI GCNGC 6 cut(s) 17, 48, 92, 357, 360, 455
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 1 cut(s) 50
HapII CCGG 1 cut(s) 76
HhaI GCGC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 2 cut(s) 55, 304
HpaII CCGG 1 cut(s) 76
HphI GGTGA 3 cut(s) 208, 338, 415
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 82, 379, 462
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 406
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 4 cut(s) 193, 208, 388, 484
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 5 cut(s) 262, 336, 359, 448, 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 2 cut(s) 363, 378
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 2 cut(s) 42, 63
LmnI GCTCC 5 cut(s) 13, 34, 78, 154, 203
LpnPI CCDG 6 cut(s) 17, 52, 89, 122, 169, 401
Lsp1109I GCAGC 4 cut(s) 28, 343, 371, 466
MaeIII GTNAC 2 cut(s) 326, 341
MalI GATC 2 cut(s) 44, 65
MbiI CCGCTC 1 cut(s) 91
MboI GATC 2 cut(s) 42, 63
MboII GAAGA 5 cut(s) 52, 151, 289, 379, 410
MfeI CAATTG 2 cut(s) 257, 331
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 442
MluCI AATT 7 cut(s) 125, 257, 271, 314, 331, 424, 471
MnlI CCTC 9 cut(s) 123, 139, 145, 154, 171, 187, 286, 394, 492
MseI TTAA 2 cut(s) 222, 297
MspA1I CMGCKG 2 cut(s) 19, 362
MspI CCGG 1 cut(s) 76
MunI CAATTG 2 cut(s) 257, 331
MvnI CGCG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 2 cut(s) 42, 63
NmuCI GTSAC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PkrI GCNGC 6 cut(s) 18, 49, 93, 358, 361, 456
PspPI GGNCC 2 cut(s) 49, 78
PstI CTGCAG 2 cut(s) 361, 489
PsuI RGATCY 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 362
Rsr2I CGGWCCG 1 cut(s) 78
RsrII CGGWCCG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 222, 297
SatI GCNGC 6 cut(s) 17, 48, 92, 357, 360, 455
Sau3AI GATC 2 cut(s) 42, 63
Sau96I GGNCC 2 cut(s) 49, 78
SduI GDGCHC 1 cut(s) 442
SfcI CTRYAG 2 cut(s) 357, 485
SinI GGWCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 7 cut(s) 125, 257, 271, 314, 331, 424, 471
SsiI CCGC 4 cut(s) 19, 47, 91, 324
TaaI ACNGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 87, 96
TasI AATT 7 cut(s) 125, 257, 271, 314, 331, 424, 471
TauI GCSGC 2 cut(s) 50, 94
Tru1I TTAA 2 cut(s) 222, 297
Tru9I TTAA 2 cut(s) 222, 297
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 4 cut(s) 16, 356, 359, 454
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 2 cut(s) 227, 407
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 2 cut(s) 271, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.