Rroxscaffold_1G00062340

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010283
Physical Location & Seq
Forward (+)
84404096 .. 84405476
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062340.1

Sequence Viewer

Length: 621 bp
ATGGCGCTCTCGGCGTTTCGTGACCGACTCGAACACATGGATCACACTCGTAACCAACGTCTCTCTCTCCTCCAGGCGGAGAAAGAATCGCAGGCGAACAAGTCTCAGGAGCTGGCGTTGAAGCTCGAGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCAGAAGATCGCGGCCCAAAGCTTCAAGATCTGGGCGCTCCGGTCCGATATCGAGCGGCTCGACGCGAAATACCAGAGTGATTTAGAGAAATTGAGGGTTTTGAAGAGTGACGTGGAGGAGCTTGAGGGATTGGAAAAGGAGAGGAACAGGTTTTATGAGGTGAAGGGAGCTGAAACGAAGGAGTTTAAGCAAAATGTGGAGAGGTTTGCTTGGGAATGTCAATTGCAGATTGAGAATTTGAAGAATGGTATCAATGAGGTTAAGTCAAGCTTTGTGGAATTTCAAGGCAATGACAATTGCACAAGTAACTGGGAGATAGCTGCAGCTGAGAAGAGAAAGTCTGAGCTTTTGGCTATGAAGGAAGAGGTGAACAAAAAGCTGGCTTCTAATTACCAAACAAGAGCTCGATTGCAAAAGCAGCTTCAGACCATTCTAATTGCCAATCCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

206

Amino Acids

24.01

Weight (kDa)

6.78

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 21 - 140 2.5e-20 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AccII CGCG 2 cut(s) 179, 233
AciI CCGC 4 cut(s) 77, 151, 179, 223
AclWI GGATC 1 cut(s) 48
AcsI RAATTY 2 cut(s) 403, 446
AcuI CTGAAG 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 5 cut(s) 121, 193, 271, 409, 452
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 72
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 65, 108
AlwI GGATC 1 cut(s) 48
AlwNI CAGNNNCTG 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 148, 488, 491, 586
ApoI RAATTY 2 cut(s) 403, 446
AspLEI GCGC 2 cut(s) 7, 205
AspS9I GGNCC 2 cut(s) 181, 210
AsuHPI GGTGA 2 cut(s) 340, 547
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 4 cut(s) 160, 475, 503, 598
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 65, 108
BfmI CTRYAG 2 cut(s) 489, 617
BfoI RGCGCY 2 cut(s) 8, 206
BglII AGATCT 1 cut(s) 195
BisI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
BlsI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 125
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 181, 210
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 487
BpmI CTGGAG 2 cut(s) 56, 185
BpuEI CTTGAG 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 207
BsaXI ACNNNNNCTCC 4 cut(s) 101, 131, 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 463
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 463
BseMII CTCAG 3 cut(s) 119, 486, 501
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 2 cut(s) 59, 299
BseXI GCAGC 4 cut(s) 160, 475, 503, 598
Bsh1236I CGCG 2 cut(s) 179, 233
BshFI GGCC 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 65, 108
BsmBI CGTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 574
Bsp143I GATC 3 cut(s) 40, 174, 195
BspACI CCGC 4 cut(s) 77, 151, 179, 223
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 3 cut(s) 118, 487, 502
BspFNI CGCG 2 cut(s) 179, 233
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 1 cut(s) 48
BsrBI CCGCTC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 482
BssMI GATC 3 cut(s) 40, 174, 195
Bst2UI CCWGG 1 cut(s) 74
Bst6I CTCTTC 3 cut(s) 266, 494, 525
BstC8I GCNNGC 3 cut(s) 93, 114, 549
BstDEI CTNAG 3 cut(s) 105, 495, 510
BstFNI CGCG 2 cut(s) 179, 233
BstH2I RGCGCY 2 cut(s) 8, 206
BstHHI GCGC 2 cut(s) 7, 205
BstKTI GATC 3 cut(s) 43, 177, 198
BstMAI GTCTC 2 cut(s) 65, 108
BstMBI GATC 3 cut(s) 40, 174, 195
BstMWI GCNNNNNNNGC 2 cut(s) 11, 586
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 2 cut(s) 489, 617
BstUI CGCG 2 cut(s) 179, 233
BstV1I GCAGC 4 cut(s) 160, 475, 503, 598
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 1 cut(s) 155
BtrI CACGTC 1 cut(s) 280
Cac8I GCNNGC 3 cut(s) 93, 114, 549
CaiI CAGNNNCTG 1 cut(s) 112
CfoI GCGC 2 cut(s) 7, 205
Cfr13I GGNCC 2 cut(s) 181, 210
CpoI CGGWCCG 1 cut(s) 210
CseI GACGC 1 cut(s) 239
CspCI CAANNNNNGTGG 2 cut(s) 423, 458
CspI CGGWCCG 1 cut(s) 210
CviAII CATG 2 cut(s) 37, 133
DdeI CTNAG 3 cut(s) 105, 495, 510
DpnI GATC 3 cut(s) 42, 176, 197
DpnII GATC 3 cut(s) 40, 174, 195
Eam1104I CTCTTC 3 cut(s) 266, 494, 525
EarI CTCTTC 3 cut(s) 266, 494, 525
EciI GGCGGA 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 574
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 210
Eco53kI GAGCTC 1 cut(s) 572
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 572
EcoRII CCWGG 1 cut(s) 72
EcoRV GATATC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 2 cut(s) 40, 136
FaiI YATR 4 cut(s) 38, 134, 324, 524
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FatI CATG 2 cut(s) 36, 132
Fnu4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GlaI GCGC 2 cut(s) 6, 204
GluI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
GsuI CTGGAG 2 cut(s) 56, 185
HaeII RGCGCY 2 cut(s) 8, 206
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 7, 205
Hin1II CATG 2 cut(s) 40, 136
Hin6I GCGC 2 cut(s) 5, 203
HinP1I GCGC 2 cut(s) 5, 203
HindIII AAGCTT 2 cut(s) 187, 436
HinfI GANTC 2 cut(s) 27, 86
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 340, 547
Hpy166II GTNNAC 1 cut(s) 538
Hpy188I TCNGA 3 cut(s) 214, 511, 594
Hpy188III TCNNGA 4 cut(s) 20, 107, 127, 193
Hpy8I GTNNAC 1 cut(s) 538
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 325, 340, 520
HpyCH4IV ACGT 2 cut(s) 58, 279
HpyCH4V TGCA 4 cut(s) 394, 468, 491, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 586
HpyF3I CTNAG 3 cut(s) 105, 495, 510
HpySE526I ACGT 2 cut(s) 58, 279
Hsp92II CATG 2 cut(s) 40, 136
HspAI GCGC 2 cut(s) 5, 203
Kzo9I GATC 3 cut(s) 40, 174, 195
LmnI GCTCC 6 cut(s) 109, 145, 166, 210, 286, 335
Lsp1109I GCAGC 4 cut(s) 160, 475, 503, 598
MaeII ACGT 2 cut(s) 58, 279
MaeIII GTNAC 4 cut(s) 20, 50, 275, 473
MalI GATC 3 cut(s) 42, 176, 197
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 40, 174, 195
MboII GAAGA 5 cut(s) 184, 283, 421, 511, 542
MfeI CAATTG 2 cut(s) 389, 463
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 9 cut(s) 80, 255, 277, 286, 303, 319, 363, 418, 526
MseI TTAA 2 cut(s) 354, 429
MspA1I CMGCKG 2 cut(s) 151, 494
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 2 cut(s) 389, 463
MvaI CCWGG 1 cut(s) 74
MvnI CGCG 2 cut(s) 179, 233
MwoI GCNNNNNNNGC 2 cut(s) 11, 586
NdeII GATC 3 cut(s) 40, 174, 195
NlaIII CATG 2 cut(s) 40, 136
NmuCI GTSAC 2 cut(s) 20, 275
PaeR7I CTCGAG 1 cut(s) 125
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 225
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 6 cut(s) 150, 181, 225, 490, 493, 588
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspPI GGNCC 2 cut(s) 181, 210
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 195
PvuII CAGCTG 1 cut(s) 494
Rsr2I CGGWCCG 1 cut(s) 210
RsrII CGGWCCG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 574
SaqAI TTAA 2 cut(s) 354, 429
SatI GCNGC 6 cut(s) 149, 180, 224, 489, 492, 587
Sau3AI GATC 3 cut(s) 40, 174, 195
Sau96I GGNCC 2 cut(s) 181, 210
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 489, 617
Sfr274I CTCGAG 1 cut(s) 125
SinI GGWCC 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 125, 290
SmoI CTYRAG 2 cut(s) 125, 290
Sse9I AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
SsiI CCGC 4 cut(s) 77, 151, 179, 223
SstI GAGCTC 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 72
TaiI ACGT 2 cut(s) 61, 282
TaqI TCGA 5 cut(s) 30, 126, 219, 228, 574
TaqII GACCGA 1 cut(s) 39
TasI AATT 7 cut(s) 257, 389, 403, 446, 463, 556, 603
TauI GCSGC 2 cut(s) 182, 226
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 354, 429
Tru9I TTAA 2 cut(s) 354, 429
TseFI GTSAC 2 cut(s) 20, 275
TseI GCWGC 4 cut(s) 148, 488, 491, 586
Tsp45I GTSAC 2 cut(s) 20, 275
TspDTI ATGAA 1 cut(s) 539
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 403, 446
XhoI CTCGAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.