Rorug05G0016500

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010283
Physical Location & Seq
Forward (+)
1112337 .. 1115355
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0016500.1

Sequence Viewer

Length: 651 bp
ATGGCCAAAACCAGACCCGGAAAAAAAGACGTCGACTCCTACACTATCAGAGGCACCAACAAGGTCGTCCGAGCTGGGGATTGTGTGCTGATGCGGCCGTCGGATGTGGGGAAGCCGCAATACGTGGCACGAATCGAGAAGATTGAGACTGACAGCAAGAGCAATGCTAAGGTGAGAGTGAGGTGGTACTATAGGCCTGAGGAGTCTATTGGAGGGCGCAGGCAGTTCCATGGATCCAAAGAGCTCTTCTTGTCTGACCACTATGATGTTCAGAGTGCGAACACCATTGAGGGCAAGTGTGTGGTCCACTCGTTTAAGAATTACACGAAGCTCGAAAATGTGGGAGCTGAGGACTACTACTGTAGGTTTGAGTACAAGGCTGCTACTGGGGCTTTTACTCCTGATAGAGTTGCTGTGTATTGCAAGTGTGAGATGCCGTATAACCCGGATGACCTCATGGTGCAGTGTGAGGAGTGCAAAGACTGGTTTCATCCAGCATGTGTGAACATCTCAAATGAGGTAGCCAAAAAATTGGAGCACTATATATGTTCAGAATGTTCAGCTGACGAGGATGTGAAAAAACCTCAGAACTCAGTTTCAGCATCACTTGCAGATGATGTCAAGGTGGACCCTAAGCGCCGAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

216

Amino Acids

24.69

Weight (kDa)

8.43

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BAH PF01426 23 - 134 8.8e-25 BAH domain
PHD PF00628 141 - 186 5.4e-09 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 53
AccI GTMKAC 1 cut(s) 33
AciI CCGC 2 cut(s) 94, 116
AclWI GGATC 2 cut(s) 228, 241
AcoI YGGCCR 2 cut(s) 3, 95
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 2 cut(s) 188, 374
AfiI CCNNNNNNNGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 5 cut(s) 74, 244, 331, 347, 563
AluI AGCT 5 cut(s) 74, 244, 331, 347, 563
Alw21I GWGCWC 2 cut(s) 246, 540
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 2 cut(s) 228, 241
AoxI GGCC 3 cut(s) 3, 95, 194
ApeKI GCWGC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 219, 639
AspS9I GGNCC 2 cut(s) 304, 628
AsuC2I CCSGG 2 cut(s) 18, 446
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 2 cut(s) 304, 628
AxyI CCTNAGG 1 cut(s) 198
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 246
BarI GAAGNNNNNNTAC 2 cut(s) 104, 136
Bbv12I GWGCWC 2 cut(s) 246, 540
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 367
BceAI ACGGC 2 cut(s) 82, 421
BcnI CCSGG 2 cut(s) 18, 446
BcoDI GTCTC 1 cut(s) 140
BfmI CTRYAG 2 cut(s) 190, 361
BfoI RGCGCY 1 cut(s) 640
BisI GCNGC 3 cut(s) 95, 116, 381
BlsI GCNGC 3 cut(s) 96, 117, 382
Bme1390I CCNGG 2 cut(s) 18, 446
Bme18I GGWCC 2 cut(s) 304, 628
BmgT120I GGNCC 2 cut(s) 304, 628
BmiI GGNNCC 3 cut(s) 55, 235, 630
BmrFI CCNGG 2 cut(s) 18, 446
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 3 cut(s) 81, 423, 611
BmuI ACTGGG 1 cut(s) 396
Bpu10I CCTNAGC 3 cut(s) 168, 348, 633
BpuMI CCSGG 2 cut(s) 18, 446
BsaAI YACGTR 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 391, 488
Bse21I CCTNAGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 4 cut(s) 109, 454, 490, 577
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 4 cut(s) 189, 339, 599, 606
BseNI ACTGG 2 cut(s) 391, 488
BseRI GAGGAG 2 cut(s) 215, 485
BseX3I CGGCCG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 367
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 482
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 5, 97, 196
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 246, 540
BsiSI CCGG 2 cut(s) 18, 446
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 140
BsnI GGCC 3 cut(s) 5, 97, 196
Bsp1286I GDGCHC 2 cut(s) 246, 540
Bsp143I GATC 1 cut(s) 233
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 94, 116
BspANI GGCC 3 cut(s) 5, 97, 196
BspCNI CTCAG 4 cut(s) 190, 340, 598, 605
BspLI GGNNCC 3 cut(s) 55, 235, 630
BspPI GGATC 2 cut(s) 228, 241
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 391, 488
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 233
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 608
BstBAI YACGTR 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 4 cut(s) 109, 454, 490, 577
BstH2I RGCGCY 1 cut(s) 640
BstHHI GCGC 2 cut(s) 219, 639
BstKTI GATC 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 233
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 3 cut(s) 94, 389, 608
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 16, 444
BstSFI CTRYAG 2 cut(s) 190, 361
BstV1I GCAGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 233
BstZI CGGCCG 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 198
BsuRI GGCC 3 cut(s) 5, 97, 196
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 4 cut(s) 109, 454, 490, 577
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 221
CfoI GCGC 2 cut(s) 219, 639
Cfr13I GGNCC 2 cut(s) 304, 628
Csp6I GTAC 2 cut(s) 187, 373
CviAII CATG 3 cut(s) 230, 457, 498
CviQI GTAC 2 cut(s) 187, 373
DdeI CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 3, 95
EagI CGGCCG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 244
EclXI CGGCCG 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 304, 628
Eco52I CGGCCG 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 244
Eco81I CCTNAGG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 233, 460, 501
FaiI YATR 9 cut(s) 192, 231, 264, 441, 458, 499, 543, 545, 547
FatI CATG 3 cut(s) 229, 456, 497
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 95, 116, 381
FokI GGATG 4 cut(s) 116, 461, 477, 584
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 95, 116, 381
GlaI GCGC 2 cut(s) 218, 638
GluI GCNGC 3 cut(s) 95, 116, 381
GsaI CCCAGC 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 640
HaeIII GGCC 3 cut(s) 5, 97, 196
HapII CCGG 2 cut(s) 18, 446
HhaI GCGC 2 cut(s) 219, 639
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 3 cut(s) 233, 460, 501
Hin6I GCGC 2 cut(s) 217, 637
HinP1I GCGC 2 cut(s) 217, 637
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 35, 132, 203
HpaII CCGG 2 cut(s) 18, 446
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 4 cut(s) 34, 307, 505, 628
Hpy188I TCNGA 7 cut(s) 50, 71, 103, 256, 273, 553, 588
Hpy188III TCNNGA 2 cut(s) 136, 401
Hpy8I GTNNAC 4 cut(s) 34, 307, 505, 628
Hpy99I CGWCG 2 cut(s) 35, 103
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 30, 123
HpyCH4V TGCA 4 cut(s) 423, 463, 477, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 389, 608
HpyF3I CTNAG 6 cut(s) 168, 198, 348, 585, 592, 633
HpySE526I ACGT 2 cut(s) 30, 123
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 3 cut(s) 233, 460, 501
HspAI GCGC 2 cut(s) 217, 637
Kzo9I GATC 1 cut(s) 233
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 344, 535
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 3 cut(s) 81, 423, 611
MaeII ACGT 2 cut(s) 30, 123
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 2 cut(s) 151, 238
MflI RGATCY 1 cut(s) 233
MhlI GDGCHC 2 cut(s) 246, 540
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 319, 530
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 29, 212
MmeI TCCRAC 1 cut(s) 81
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 315
MslI CAYNNNNRTG 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 2 cut(s) 18, 446
MspR9I CCNGG 2 cut(s) 18, 446
MwoI GCNNNNNNNGC 3 cut(s) 94, 389, 608
NciI CCSGG 2 cut(s) 18, 446
NcoI CCATGG 1 cut(s) 229
NdeII GATC 1 cut(s) 233
NlaIII CATG 3 cut(s) 233, 460, 501
NlaIV GGNNCC 3 cut(s) 55, 235, 630
NspI RCATGY 1 cut(s) 501
PceI AGGCCT 1 cut(s) 196
PciSI GCTCTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 132
PkrI GCNGC 3 cut(s) 96, 117, 382
PleI GAGTC 2 cut(s) 29, 211
PpsI GAGTC 2 cut(s) 29, 211
Ppu21I YACGTR 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 55, 235, 630
PspPI GGNCC 2 cut(s) 304, 628
PsuI RGATCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 2 cut(s) 188, 374
RsaNI GTAC 2 cut(s) 187, 373
RseI CAYNNNNRTG 1 cut(s) 264
SacI GAGCTC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 3 cut(s) 95, 116, 381
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 2 cut(s) 304, 628
SchI GAGTC 2 cut(s) 29, 212
ScrFI CCNGG 2 cut(s) 18, 446
SduI GDGCHC 2 cut(s) 246, 540
SfaNI GCATC 3 cut(s) 81, 423, 611
SfcI CTRYAG 2 cut(s) 190, 361
SinI GGWCC 2 cut(s) 304, 628
SmiMI CAYNNNNRTG 1 cut(s) 264
Sse9I AATT 2 cut(s) 319, 530
SseBI AGGCCT 1 cut(s) 196
SsiI CCGC 2 cut(s) 94, 116
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 16, 444
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 33, 126
TaqI TCGA 3 cut(s) 33, 135, 333
TasI AATT 2 cut(s) 319, 530
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 97, 118
TfiI GAWTC 1 cut(s) 132
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 470
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 479
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 304, 628
XceI RCATGY 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 33
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.