Rroxscaffold_1G00009790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0010283
Physical Location & Seq
Forward (+)
12307080 .. 12307621
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009790.1

Sequence Viewer

Length: 399 bp
ATGCGGCAACGATTCCTTGGCGGTTTCTCGGCCATCACCGCCAGCCTACTCCATCGTAGGAGACGACCGGGCTGCTCGGATTCAAGTTCTCCCTCAAACCCTCTCACTTCGGACACCGTCGATCAAATCGACGCCGACTCGAACATATGGATCACATCAATCGCAGCGAACAAGTCTCGGGAGATGGCGTTGAAGCTCGCGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGCTGGAGCGAGAAGATCGCGGCCCAAAGTTTCAAGATCCGGGCTCTCGGTCGAGGTTTGCTCGCTTCTCCTTGTTCATCGCTATGTGCTTCACCGCGATCCAAATTATCCGACACTGCGGCAAGCACGACTTCGTCGTCGTCGCGTTCACGGCTCGATCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

10.06

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 368
AccII CGCG 4 cut(s) 200, 252, 329, 377
AciI CCGC 7 cut(s) 4, 21, 39, 223, 252, 327, 351
AclWI GGATC 3 cut(s) 158, 263, 325
AcoI YGGCCR 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 132
AgsI TTSAA 3 cut(s) 84, 193, 266
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 55, 180
AlwI GGATC 3 cut(s) 158, 263, 325
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 2 cut(s) 30, 253
ApeKI GCWGC 3 cut(s) 72, 164, 220
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 69, 273
AsuHPI GGTGA 2 cut(s) 28, 316
AvaI CYCGRG 1 cut(s) 177
BanII GRGCYC 1 cut(s) 278
BbvI GCAGC 3 cut(s) 59, 176, 232
BccI CCATC 4 cut(s) 41, 60, 178, 208
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BcnI CCSGG 2 cut(s) 69, 273
BcoDI GTCTC 2 cut(s) 55, 180
BisI GCNGC 6 cut(s) 5, 73, 165, 221, 253, 352
BlsI GCNGC 6 cut(s) 6, 74, 166, 222, 254, 353
Bme1390I CCNGG 2 cut(s) 69, 273
BmeT110I CYCGRG 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 69, 273
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BpmI CTGGAG 1 cut(s) 257
BpuMI CCSGG 2 cut(s) 69, 273
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 4 cut(s) 173, 203, 209, 239
BseDI CCNNGG 1 cut(s) 16
BseXI GCAGC 3 cut(s) 59, 176, 232
Bsh1236I CGCG 4 cut(s) 200, 252, 329, 377
Bsh1285I CGRYCG 2 cut(s) 68, 284
BshFI GGCC 2 cut(s) 32, 255
BsiEI CGRYCG 2 cut(s) 68, 284
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 2 cut(s) 68, 272
BsmAI GTCTC 2 cut(s) 55, 180
BsmBI CGTCTC 1 cut(s) 55
BsnI GGCC 2 cut(s) 32, 255
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 278
Bsp143I GATC 6 cut(s) 121, 150, 247, 268, 330, 389
Bsp68I TCGCGA 1 cut(s) 200
BspACI CCGC 7 cut(s) 4, 21, 39, 223, 252, 327, 351
BspANI GGCC 2 cut(s) 32, 255
BspFNI CGCG 4 cut(s) 200, 252, 329, 377
BspPI GGATC 3 cut(s) 158, 263, 325
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 6 cut(s) 121, 150, 247, 268, 330, 389
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 5 cut(s) 43, 198, 202, 295, 356
BstFNI CGCG 4 cut(s) 200, 252, 329, 377
BstKTI GATC 6 cut(s) 124, 153, 250, 271, 333, 392
BstMAI GTCTC 2 cut(s) 55, 180
BstMBI GATC 6 cut(s) 121, 150, 247, 268, 330, 389
BstMCI CGRYCG 2 cut(s) 68, 284
BstMWI GCNNNNNNNGC 2 cut(s) 38, 383
BstSCI CCNGG 2 cut(s) 67, 271
BstUI CGCG 4 cut(s) 200, 252, 329, 377
BstV1I GCAGC 3 cut(s) 59, 176, 232
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuRI GGCC 2 cut(s) 32, 255
BtgZI GCGATG 2 cut(s) 227, 295
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
BtuMI TCGCGA 1 cut(s) 200
Cac8I GCNNGC 5 cut(s) 43, 198, 202, 295, 356
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 140
CviAII CATG 1 cut(s) 205
CviJI RGCY 7 cut(s) 32, 45, 72, 196, 255, 276, 386
CviKI_1 RGCY 7 cut(s) 32, 45, 72, 196, 255, 276, 386
DpnI GATC 6 cut(s) 123, 152, 249, 270, 332, 391
DpnII GATC 6 cut(s) 121, 150, 247, 268, 330, 389
DrdI GACNNNNNNGTC 1 cut(s) 368
DseDI GACNNNNNNGTC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 278
Eco88I CYCGRG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 16
Esp3I CGTCTC 1 cut(s) 55
FaeI CATG 1 cut(s) 208
FaiI YATR 4 cut(s) 146, 148, 206, 317
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 146
Fnu4HI GCNGC 6 cut(s) 5, 73, 165, 221, 253, 352
FriOI GRGCYC 1 cut(s) 278
Fsp4HI GCNGC 6 cut(s) 5, 73, 165, 221, 253, 352
GluI GCNGC 6 cut(s) 5, 73, 165, 221, 253, 352
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 2 cut(s) 32, 255
HapII CCGG 2 cut(s) 68, 272
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 1 cut(s) 208
HinfI GANTC 3 cut(s) 12, 80, 137
HpaII CCGG 2 cut(s) 68, 272
HphI GGTGA 2 cut(s) 28, 316
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 79, 112, 344
Hpy188III TCNNGA 3 cut(s) 179, 199, 266
Hpy8I GTNNAC 1 cut(s) 381
Hpy99I CGWCG 5 cut(s) 122, 134, 371, 374, 377
HpyCH4III ACNGT 1 cut(s) 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 383
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 6 cut(s) 121, 150, 247, 268, 330, 389
LmnI GCTCC 2 cut(s) 217, 238
LpnPI CCDG 4 cut(s) 55, 81, 221, 285
Lsp1109I GCAGC 3 cut(s) 59, 176, 232
MalI GATC 6 cut(s) 123, 152, 249, 270, 332, 391
MboI GATC 6 cut(s) 121, 150, 247, 268, 330, 389
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 1 cut(s) 336
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 3 cut(s) 103, 111, 279
MseI TTAA 1 cut(s) 397
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 2 cut(s) 68, 272
MspR9I CCNGG 2 cut(s) 69, 273
MvnI CGCG 4 cut(s) 200, 252, 329, 377
MwoI GCNNNNNNNGC 2 cut(s) 38, 383
NciI CCSGG 2 cut(s) 69, 273
NdeI CATATG 1 cut(s) 146
NdeII GATC 6 cut(s) 121, 150, 247, 268, 330, 389
NlaIII CATG 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 8
NruI TCGCGA 1 cut(s) 200
PcsI WCGNNNNNNNCGW 3 cut(s) 61, 126, 366
PfeI GAWTC 2 cut(s) 12, 80
PflFI GACNNNGTC 2 cut(s) 116, 365
PkrI GCNGC 6 cut(s) 6, 74, 166, 222, 254, 353
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 2 cut(s) 116, 365
RruI TCGCGA 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 397
SatI GCNGC 6 cut(s) 5, 73, 165, 221, 253, 352
Sau3AI GATC 6 cut(s) 121, 150, 247, 268, 330, 389
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 69, 273
SduI GDGCHC 1 cut(s) 278
SetI ASST 2 cut(s) 198, 290
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 1 cut(s) 336
SsiI CCGC 7 cut(s) 4, 21, 39, 223, 252, 327, 351
StyD4I CCNGG 2 cut(s) 67, 271
StyI CCWWGG 1 cut(s) 16
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 5 cut(s) 120, 129, 140, 284, 388
TaqII GACCGA 1 cut(s) 270
TasI AATT 1 cut(s) 336
TauI GCSGC 3 cut(s) 7, 255, 354
TfiI GAWTC 2 cut(s) 12, 80
Tru1I TTAA 1 cut(s) 397
Tru9I TTAA 1 cut(s) 397
TscAI CASTG 1 cut(s) 353
TseI GCWGC 3 cut(s) 72, 164, 220
TspDTI ATGAA 1 cut(s) 298
TspRI CASTG 1 cut(s) 353
Tth111I GACNNNGTC 2 cut(s) 116, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.