Rh2DG296600

Human Cytomegalovirus UL139 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010283
Physical Location & Seq
Reverse (-)
35228810 .. 35241153
12344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG296600.1

Sequence Viewer

Length: 369 bp
ATGTTCCTTGGCAGCTTCTCGGCCATCACTGCTGGCTACTCCATCGTAGGAGACGACGGGCTGCTCAGATTCAAGTTCTCCCCCAAACTCTCTCACTTCAGACACCTCTCGATCAAATCGACGTCGACTCGAACATATGGATCACATCGTAACCAACGTCTCTCTCTCCTCCAGGCGGAGAAAGAATCGCAGGCGAATAAGTCTCAAGAGCTGGCGTTGAAGCTCGGGAGCATGGGGGCGATGGAGCAGCGGTGCTTGGTGGTGGAGCAGAAGATCGCGACCCAAAGATTCAAGATCTGGGAGCTCTGGCGCCCCAATCTCCTTCGATCCTTCAATCCTTCTTCTTCTTCTTCCGAGACTGGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HCMV_UL139

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

10.16

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HCMV_UL139 PF12507 54 - 99 5.6e-06 Human Cytomegalovirus UL139 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010283)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34580 AT2G34580
fragaria_vesca FvH4_3g05500
malus_domestica MD05G1283500.v1.1
prunus_persica Prupe.4G081100_v2.0.a1
pyrus_communis pycom05g26260
rosa_chinensis RchiOBHm_Chr5g0014241
rosa_laevigata RLG00000032093
rosa_multiflora Rmu_sc0001670.1_g000033
rosa_roxburghii Rroxscaffold_1G00009790 Rroxscaffold_1G00062340
rosa_rugosa Rorug05G0016400 Rorug05G0016400 Rorug05G0016500
rosa_samantha Rh2DG296600 Rh4DG424600 Rh5AG110800 Rh5BG108100 Rh5CG119500 Rh5DG106200
rosa_wichuraiana Rw5G009660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 125
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 176, 250
AclWI GGATC 2 cut(s) 148, 321
AcoI YGGCCR 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 2 cut(s) 122, 310
AfiI CCNNNNNNNGG 2 cut(s) 175, 360
AgsI TTSAA 4 cut(s) 73, 220, 292, 334
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 4 cut(s) 15, 211, 223, 304
AluI AGCT 4 cut(s) 15, 211, 223, 304
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 4 cut(s) 45, 164, 207, 350
AlwI GGATC 2 cut(s) 148, 321
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 3 cut(s) 12, 61, 247
AspLEI GCGC 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 224
BanI GGYRCC 1 cut(s) 309
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 24, 48, 259
BccI CCATC 3 cut(s) 32, 50, 235
BciT130I CCWGG 1 cut(s) 173
BcoDI GTCTC 4 cut(s) 45, 164, 207, 350
BfoI RGCGCY 1 cut(s) 313
BglII AGATCT 1 cut(s) 294
BisI GCNGC 3 cut(s) 13, 62, 248
BlsI GCNGC 3 cut(s) 14, 63, 249
Bme1390I CCNGG 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 369
BmuI ACTGGG 1 cut(s) 369
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 189
BsaHI GRCGYC 2 cut(s) 122, 310
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 360
Bse1I ACTGG 1 cut(s) 364
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 2 cut(s) 175, 360
BseMII CTCAG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 3 cut(s) 24, 48, 259
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 175, 360
BsmAI GTCTC 4 cut(s) 45, 164, 207, 350
BsmBI CGTCTC 2 cut(s) 45, 164
BsnI GGCC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 111, 140, 273, 294, 326
Bsp68I TCGCGA 1 cut(s) 278
BspACI CCGC 2 cut(s) 176, 250
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 1 cut(s) 311
BspPI GGATC 2 cut(s) 148, 321
BspT107I GGYRCC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 5 cut(s) 111, 140, 273, 294, 326
BssNI GRCGYC 2 cut(s) 122, 310
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 173
BstACI GRCGYC 2 cut(s) 122, 310
BstC8I GCNNGC 3 cut(s) 34, 192, 213
BstDEI CTNAG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 5 cut(s) 114, 143, 276, 297, 329
BstMAI GTCTC 4 cut(s) 45, 164, 207, 350
BstMBI GATC 5 cut(s) 111, 140, 273, 294, 326
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 3 cut(s) 24, 48, 259
BstX2I RGATCY 1 cut(s) 294
BstYI RGATCY 1 cut(s) 294
BsuRI GGCC 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 254
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
BtuMI TCGCGA 1 cut(s) 278
Cac8I GCNNGC 3 cut(s) 34, 192, 213
CfoI GCGC 1 cut(s) 312
CviAII CATG 1 cut(s) 232
CviJI RGCY 7 cut(s) 15, 23, 36, 61, 211, 223, 304
CviKI_1 RGCY 7 cut(s) 15, 23, 36, 61, 211, 223, 304
DdeI CTNAG 1 cut(s) 65
DinI GGCGCC 1 cut(s) 311
DpnI GATC 5 cut(s) 113, 142, 275, 296, 328
DpnII GATC 5 cut(s) 111, 140, 273, 294, 326
EaeI YGGCCR 1 cut(s) 21
EciI GGCGGA 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 306
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 311
EheI GGCGCC 1 cut(s) 311
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 2 cut(s) 45, 164
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 136, 138, 233
FatI CATG 1 cut(s) 231
FauNDI CATATG 1 cut(s) 136
FblI GTMKAC 1 cut(s) 125
Fnu4HI GCNGC 3 cut(s) 13, 62, 248
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 13, 62, 248
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 13, 62, 248
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 1 cut(s) 23
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 2 cut(s) 122, 310
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 4 cut(s) 69, 127, 185, 288
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 68, 101, 355
Hpy188III TCNNGA 5 cut(s) 109, 206, 226, 277, 292
Hpy8I GTNNAC 1 cut(s) 126
Hpy99I CGWCG 3 cut(s) 59, 124, 127
HpyAV CCTTC 3 cut(s) 332, 340, 348
HpyCH4IV ACGT 2 cut(s) 122, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 122, 157
Hsp92I GRCGYC 2 cut(s) 122, 310
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 310
KasI GGCGCC 1 cut(s) 309
Kzo9I GATC 5 cut(s) 111, 140, 273, 294, 326
LmnI GCTCC 4 cut(s) 228, 244, 265, 301
LpnPI CCDG 8 cut(s) 18, 158, 176, 185, 197, 283, 292, 345
Lsp1109I GCAGC 3 cut(s) 24, 48, 259
MaeII ACGT 2 cut(s) 122, 157
MaeIII GTNAC 1 cut(s) 149
MalI GATC 5 cut(s) 113, 142, 275, 296, 328
MboI GATC 5 cut(s) 111, 140, 273, 294, 326
MboII GAAGA 5 cut(s) 283, 333, 336, 339, 342
MflI RGATCY 1 cut(s) 294
MhlI GDGCHC 1 cut(s) 306
Mly113I GGCGCC 1 cut(s) 310
MlyI GAGTC 1 cut(s) 121
MnlI CCTC 2 cut(s) 116, 179
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 1 cut(s) 29
NarI GGCGCC 1 cut(s) 310
NdeI CATATG 1 cut(s) 136
NdeII GATC 5 cut(s) 111, 140, 273, 294, 326
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 311
NruI TCGCGA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 116, 154
PfeI GAWTC 3 cut(s) 69, 185, 288
PkrI GCNGC 3 cut(s) 14, 63, 249
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 311
PsuI RGATCY 1 cut(s) 294
RruI TCGCGA 1 cut(s) 278
SacI GAGCTC 1 cut(s) 306
SalI GTCGAC 1 cut(s) 124
SatI GCNGC 3 cut(s) 13, 62, 248
Sau3AI GATC 5 cut(s) 111, 140, 273, 294, 326
SchI GAGTC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 306
SetI ASST 7 cut(s) 17, 108, 125, 160, 213, 225, 306
SfoI GGCGCC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SsiI CCGC 2 cut(s) 176, 250
SspDI GGCGCC 1 cut(s) 309
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 7
TaiI ACGT 2 cut(s) 125, 160
TaqI TCGA 5 cut(s) 110, 119, 125, 130, 325
TfiI GAWTC 3 cut(s) 69, 185, 288
TscAI CASTG 1 cut(s) 34
TseI GCWGC 3 cut(s) 12, 61, 247
TspRI CASTG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 125
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.